BAC Information

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BAC

Clone NameB6Ng01-194E15
Chromosome2 (Build37)
Map Location 53,937,708 - 54,063,429
singlet/doubletdoublet
Overlap geneRprm
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneLOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194E15.bB6Ng01-194E15.g
ACCGA017027GA017028
length1,130965
definitionB6Ng01-194E15.b B6Ng01-194E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,062,296 - 54,063,429)(53,937,708 - 53,938,667)
sequence
gaattcctttagctgtagactttttttatttactagtccaggaaatgctt
agccaaatatatttctcatattttttctaaatcattagcatattatggtt
cttagaagtcaagagtgtgtttagtatgctgaaacactttgatcatggag
tatctccaagaaatatttagggctcattaaccaaggagacaggttctttt
tttcacataaaaccttcatgcagttgagatatctgtgtgccaaggtatga
gatatctgggtataaaatccaccggaaagacaaacataaattatattcag
agagtaatatacacatttatgaaactttctaaattatgtaacaaaggtgt
aatcgcattgcatttaattaagaaacagcagagactctacaaaaactgga
tgtcctgttggtattatttgtccagtctgctagctgcatgtacaaaatta
ccctcattctttagcacccaaaattttatagcaaagcttgaaattattca
ctgattctttctttcttagatccttttctcctatcaacttccaaatccat
tttgcgacagcagctccaattcttccaagtcatgtgggtaagaagaaatt
tatcttcctacacaggaaggatataggtcaaggtagctatttgaaagctt
aataataggaggccttccgttctgaggtttttcaattttatttgttttct
gttcccagcaataggtggttgcaggctcctgaatgctgcatttattccag
agtacccagtgtctgttagagctctgatttgtgccatggtttaatgctga
agtaccttttcccagacatatttatgcatattctttattttatgatataa
aatcttgctacaggtttatgcattagttattcacaggcaagataaatgca
ctaattattatttgctggactaatcaagacacttcccagagacgtggaag
agcatgaatagtaagtgggaattttctggcaagttttgaaagaggaacat
gcattttagtagaaaacaagaagtgtatgtgacctaccgttctccttttc
tctcactctttgtaaactcccattcagtacacaaaatacctcttcaagac
aaaaaaactctctacaattacgaaagataa

gaattcatcacgagagcaagcgggagccgggaaggcgaggatcggagggg
tggggaccagagtggctgtagcgcgggacgaacaggtgcccggcggagcg
ctggcttgatcacttgtgcgcgcagggctcctcagtctccctttcaaagt
cccaggtccgtaagtgtctcaagaacctcttcagggcgcgccgcaagctg
gctcctgtgcgctgtgttctgcccaggcagtgctcgttcccggcgctcgc
acgactgggagctcttggaacttggcgggttgggccggaggggccgtggg
aggcgcgggccttggcggtggcccggctcctgctccaagcgaacagcggc
ccctgctggtgatagagccttgctgcgcccgctcggcttagaggggcggc
taagataggagctaacctagcagcaggctttgtgccttctgcatttccaa
gggctaggcagggttcactatgcactcctgatctgaagagcaagtaaaga
acttggagagaaaggctgaaagttgcagaggacccggatcacaccctctc
ttaagtgtgtccttcgaagccaccctatcacctctgagcagatgtaaggt
ggacaggtaccagatggcgctggtcaaggtactggcctgctgcctgtgtt
tggctgctgcctgttcttgtaagctttctggtggagtattggaagacaag
gcaggtgggaagactgggaatttcttctctccccacccccacccccgttt
tttttttttttttaagtagggggtgttgctgatgttattgttgttttaag
gaaagggagaatggaggaaacctttagaatcataaaagagctacgtccgc
acccttactttggaaagctcttacgttgtgtagtaaagcggggtttgtag
tgagctgtgaggcccaaggcaaggcgcaagttctaaggagtgcttgctct
ctttgtggtttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54062296_54063429
seq2: B6Ng01-194E15.b_44_1173 (reverse)

seq1  TTATCTTTCGTAATTTGTTAGAAGATTTTTTTTTGTC-TGAAGA-GTATT  48
      |||||||||||||||   ||| |||  |||||||||| |||||| |||||
seq2  TTATCTTTCGTAATT--GTAG-AGA-GTTTTTTTGTCTTGAAGAGGTATT  46

seq1  TTGTGTTACTGAATGGGAGTTTTACAAGAGTGAGAGAAAA-GAGAACGGT  97
      ||||| ||||||||||||||||   ||||||||||||||| |||||||||
seq2  TTGTG-TACTGAATGGGAGTTTACAAAGAGTGAGAGAAAAGGAGAACGGT  95

seq1  AGGTCACATACACTTCTTGTTTTCTACTAAAATGCATGTTTCCTCTTTCA  147
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGTCACATACACTTCTTGTTTTCTACTAAAATGCATG-TTCCTCTTTCA  144

seq1  AAACTTGCCAGAAAATTCCCACTTACTATTCATGCTCTTCCACGTCTCTT  197
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAACTTGCCAGAAAATTCCCACTTACTATTCATGCTCTTCCACGTCTC-T  193

seq1  GGGAAGTGTCTTGATTAGTCCAGCAAATAATAATTAGTGCATTTATCTTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGTCTTGATTAGTCCAGCAAATAATAATTAGTGCATTTATCTTG  243

seq1  CCTGTGAATAACTAATGCATAAACCTGTAGCAAGATTTTATATCATAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAATAACTAATGCATAAACCTGTAGCAAGATTTTATATCATAAAA  293

seq1  TAAAGAATATGCATAAATATGTCTGGGAAAAGGTACTTCAGCATTAAACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATATGCATAAATATGTCTGGGAAAAGGTACTTCAGCATTAAACC  343

seq1  ATGGCACAAATCAGAGCTCTAACAGACACTGGGTACTCTGGAATAAATGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACAAATCAGAGCTCTAACAGACACTGGGTACTCTGGAATAAATGC  393

seq1  AGCATTCAGGAGCCTGCAACCACCTATTGCTGGGAACAGAAAACAAATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCAGGAGCCTGCAACCACCTATTGCTGGGAACAGAAAACAAATAA  443

seq1  AATTGAAAAACCTCAGAACGGAAGGCCTCCTATTATTAAGCTTTCAAATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAAACCTCAGAACGGAAGGCCTCCTATTATTAAGCTTTCAAATA  493

seq1  GCTACCTTGACCTATATCCTTCCTGTGTAGGAAGATAAATTTCTTCTTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTGACCTATATCCTTCCTGTGTAGGAAGATAAATTTCTTCTTAC  543

seq1  CCACATGACTTGGAAGAATTGGAGCTGCTGTCGCAAAATGGATTTGGAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGACTTGGAAGAATTGGAGCTGCTGTCGCAAAATGGATTTGGAAG  593

seq1  TTGATAGGAGAAAAGGATCTAAGAAAGAAAGAATCAGTGAATAATTTCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGAGAAAAGGATCTAAGAAAGAAAGAATCAGTGAATAATTTCAA  643

seq1  GCTTTGCTATAAAATTTTGGGTGCTAAAGAATGAGGGTAATTTTGTACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTATAAAATTTTGGGTGCTAAAGAATGAGGGTAATTTTGTACAT  693

seq1  GCAGCTAGCAGACTGGACAAATAATACCAACAGGACATCCAGTTTTTGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAGCAGACTGGACAAATAATACCAACAGGACATCCAGTTTTTGTA  743

seq1  GAGTCTCTGCTGTTTCTTAATTAAATGCAATGCGATTACACCTTTGTTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTGCTGTTTCTTAATTAAATGCAATGCGATTACACCTTTGTTAC  793

seq1  ATAATTTAGAAAGTTTCATAAATGTGTATATTACTCTCTGAATATAATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAGAAAGTTTCATAAATGTGTATATTACTCTCTGAATATAATTT  843

seq1  ATGTTTGTCTTTCCGGTGGATTTTATACCCAGATATCTCATACCTTGGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTCTTTCCGGTGGATTTTATACCCAGATATCTCATACCTTGGCA  893

seq1  CACAGATATCTCAACTGCATGAAGGTTTTATGTGAAAAAAAGAACCTGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATCTCAACTGCATGAAGGTTTTATGTGAAAAAAAGAACCTGTC  943

seq1  TCCTTGGTTAATGAGCCCTAAATATTTCTTGGAGATACTCCATGATCAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTTAATGAGCCCTAAATATTTCTTGGAGATACTCCATGATCAAA  993

seq1  GTGTTTCAGCATACTAAACACACTCTTGACTTCTAAGAACCATAATATGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCAGCATACTAAACACACTCTTGACTTCTAAGAACCATAATATGC  1043

seq1  TAATGATTTAGAAAAAATATGAGAAATATATTTGGCTAAGCATTTCCTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTAGAAAAAATATGAGAAATATATTTGGCTAAGCATTTCCTGG  1093

seq1  ACTAGTAAATAAAAAAAGTCTACAGCTAAAGGAATTC  1134
      |||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAAATAAAAAAAGTCTACAGCTAAAGGAATTC  1130


seq1: chr2_53937708_53938667
seq2: B6Ng01-194E15.g_65_1029

seq1  GAATTCATCACGAGAGCAAGCGGGAGCCGGGAAGGCGAGGATCGGAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACGAGAGCAAGCGGGAGCCGGGAAGGCGAGGATCGGAGGGG  50

seq1  TGGGGACCAGAGTGGCTGTAGCGCGGGACGAACAGGTGCCCGGCGGAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCAGAGTGGCTGTAGCGCGGGACGAACAGGTGCCCGGCGGAGCG  100

seq1  CTGGCTTGATCACTTGTGCGCGCAGGGCTCCTCAGTCTCCCTTTCAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGATCACTTGTGCGCGCAGGGCTCCTCAGTCTCCCTTTCAAAGT  150

seq1  CCCAGGTCCGTAAGTGTCTCAAGAACCTCTTCAGGGCGCGCCGCAAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCCGTAAGTGTCTCAAGAACCTCTTCAGGGCGCGCCGCAAGCTG  200

seq1  GCTCCTGTGCGCTGTGTTCTGCCCAGGCAGTGCTCGTTCCCGGCGCTCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTGCGCTGTGTTCTGCCCAGGCAGTGCTCGTTCCCGGCGCTCGC  250

seq1  ACGACTGGGAGCTCTTGGAACTTGGCGGGTTGGGCCGGAGGGGCCGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTGGGAGCTCTTGGAACTTGGCGGGTTGGGCCGGAGGGGCCGTGGG  300

seq1  AGGCGCGGGCCTTGGCGGTGGCCCGGCTCCTGCTCCAAGCGAACAGCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCGGGCCTTGGCGGTGGCCCGGCTCCTGCTCCAAGCGAACAGCGGC  350

seq1  CCCTGCTGGTGATAGAGCCTTGCTGCGCCCGCTCGGCTTAGAGGGGCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGGTGATAGAGCCTTGCTGCGCCCGCTCGGCTTAGAGGGGCGGC  400

seq1  TAAGATAGGAGCTAACCTAGCAGCAGGCTTTGTGCCTTCTGCATTTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGGAGCTAACCTAGCAGCAGGCTTTGTGCCTTCTGCATTTCCAA  450

seq1  GGGCTAGGCAGGGTTCACTATGCACTCCTGATCTGAAGAGCAAGTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGCAGGGTTCACTATGCACTCCTGATCTGAAGAGCAAGTAAAGA  500

seq1  ACTTGGAGAGAAAGGCTGAAAGTTGCAGAGGACCCGGATCACACCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGAGAAAGGCTGAAAGTTGCAGAGGACCCGGATCACACCCTCTC  550

seq1  TTAAGTGTGTCCTTCGAAGCCACCCTATCACCTCTGAGCAGATGTAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTGTCCTTCGAAGCCACCCTATCACCTCTGAGCAGATGTAAGGT  600

seq1  GGACAGGTACCAGATGGCGCTGGTCAAGGTACTGGCCTGCTGCCTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTACCAGATGGCGCTGGTCAAGGTACTGGCCTGCTGCCTGTGTT  650

seq1  TGGCTGCTGCCTGTTCTTGTAAGCTTTCTGGTGGAGTATTGGAAGACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGCCTGTTCTTGTAAGCTTTCTGGTGGAGTATTGGAAGACAAG  700

seq1  GCAGGTGGGAAGACTGGGAATTTCTTCTCTCCCCACCCCCACCCCCG-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCAGGTGGGAAGACTGGGAATTTCTTCTCTCCCCACCCCCACCCCCGTTT  750

seq1  TTTTTTTTTTTTTAAGTAGGGGGTGTTGCTGATGTTATTGTTGTTTTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAAGTAGGGGGTGTTGCTGATGTTATTGTTGTTTTAAG  800

seq1  G-AAGGGAGAATGGAGGAAAACCTTAGAAATCATAAAAGAGCTACGTCCG  848
      | |||||||||||||||||| | |||| ||||||||||||||||||||||
seq2  GAAAGGGAGAATGGAGGAAACCTTTAG-AATCATAAAAGAGCTACGTCCG  849

seq1  CACCC-TAC-TTGGAAAGCTCTTACG-TGTGTAGTAAAGCGGGGTTTGTA  895
      ||||| ||| |||||||||||||||| |||||||||||||||||||||||
seq2  CACCCTTACTTTGGAAAGCTCTTACGTTGTGTAGTAAAGCGGGGTTTGTA  899

seq1  GTGAGCTGTGAGGCCC-AGGCAAGGCGC-AGGTCTAAGGAGGTGCTTGCT  943
      |||||||||||||||| ||||||||||| || |||||||| |||||||||
seq2  GTGAGCTGTGAGGCCCAAGGCAAGGCGCAAGTTCTAAGGA-GTGCTTGCT  948

seq1  CTCTTTGTGGTTTGTGT  960
      |||||||||||||||||
seq2  CTCTTTGTGGTTTGTGT  965


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