BAC Information

Click to search

BAC

Clone NameB6Ng01-194J15
Chromosome2 (Build37)
Map Location 179,972,905 - 180,118,713
singlet/doubletdoublet
Overlap geneRps21, Cables2, BC066135, Gata5
Upstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5
Downstream geneEG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194J15.bB6Ng01-194J15.g
ACCGA017250GA017251
length4241,149
definitionB6Ng01-194J15.b B6Ng01-194J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,972,905 - 179,973,333)(180,117,564 - 180,118,713)
sequence
aacatcacaatttagacctgattggctggtttgaaatctaggaacaaaat
aaatcaaaggggtacagagagaagggatgggcttttttttttttcttttt
ttgtttttttgtttttgtttttgtttttttggttttttttttttgttttt
tgtttttttttttttggtgtttttgagacagggtttctctgtatagccct
gactgtcctggaactcactttgtagaccatgctggcctcagaaatctgcc
tgcctctgcctctgcctccatagtgctgggattaaaggcgtgtgccacca
cgcccggctgggatgggcttttaattgtttttaaaatcattattttatgt
gttttgcctgtacatatatctgtgaaccatatgcattccttggtgccctt
ggaggcctgaagagggttccaagt
gaattccttaaagccagcttgtccttgtacccacaaacacaaagctctca
agagtggtgtgtgcctcttatttcttcccccaggaaacaggacagaggag
acacttctcccatccaactgtttatcttcactcccaccctgagcagtcca
tgccaatgatgccactgcaaaatgcaagcagctccttcaacagtgagatc
ttactaagcctgggcaactgctcccctaggcacatgtctgagaggcccct
gcagtggcatctgtggtataaacagcacaacccagatgctacccactagt
gaccagggaaccatgcacggcacattgacaggatggaatattatctggtg
ataaaatctaaagcactgctacatgccatgactcttgaaactatgatgtg
gagtcaacaccaggggccacacgctgagtgtgctcgatgtgaaactccca
gagtagaaagattcaggagtgggagaggaggggatgactcatgagaagtg
ggtctcctggaggtgatgagatgatccagagggagataggaatgactgat
gcacaatattgggtaccgtagatactatgcaaggatgttctcttcaaaaa
cggttccttttatctttgttttgagacagggtctcatgtaacccgagtta
ccagcaaacttgccacgtagctggggatgacctcaaacttctaaccctcc
tgtctggacctctggagtgctaggattacaggtatgcatgccactcccag
cctggtgcctttatcttacaggaatttctcctccactgaaaaatagacaa
acctagctgaaggcctagtccaccctctctccccactgacccccatttcc
tgggctcagacctggacatgggtacctggaatctcaagggcctagctata
gctcccttggggaccattctttcaagatgctgtaagtaaaccccacttcc
cctactcagtcctgtctagagctggaacttgctgtgaaatggacagaaga
attgttgttcccttgcttctcagaatactgcagaacctttcaacatgtct
cttgtgtgaaagtctaatcttcctatcagctgctaggaattagaatcatg
ggtggaaacactatcgaacccgctctgccagggtgttctgaggaactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_179972905_179973333
seq2: B6Ng01-194J15.b_53_482

seq1  GAATTCAACATCACAATTTAGACCTGATTGGCTGGTTTGAAATCTAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATCACAATTTAGACCTGATTGGCTGGTTTGAAATCTAGGAA  50

seq1  CAAAATAAATCAAAGGGGTACAGAGAGAAGGGATGGGCTTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATCAAAGGGGTACAGAGAGAAGGGATGGGCTTTTTTTTTTTT  100

seq1  CTTTTTTTGTTTTTTTGTTTTTGTTTTTGTTTTTTTGGTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTGTTTTTTTGTTTTTGTTTTTGTTTTTTTGGTTTTTTTTTTTT  150

seq1  GTTTTTTGTTTTTTTTTTTTTGGTGTTTTTGAGACAGGGTTTCTCTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTTTTTTTTTGGTGTTTTTGAGACAGGGTTTCTCTGTAT  200

seq1  AGCCCTGACTGTCCTGGAACTCACTTTGTAGACCATGCTGGCCTCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGACTGTCCTGGAACTCACTTTGTAGACCATGCTGGCCTCAGAAA  250

seq1  TCTGCCTGCCTCTGCCTCTGCCTCCATAGTGCTGGGATTAAAGGCGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCCTCTGCCTCTGCCTCCATAGTGCTGGGATTAAAGGCGTGTG  300

seq1  CCACCACGCCCGGCTGGGATGGGCTTTTAATTGTTTTTAAAATCATTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACGCCCGGCTGGGATGGGCTTTTAATTGTTTTTAAAATCATTATT  350

seq1  TTATGTGTTTTGCCTGTACATATATCTGTGAACCATATGCATTCC-TGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTATGTGTTTTGCCTGTACATATATCTGTGAACCATATGCATTCCTTGGT  400

seq1  GCCCTTGGAGGCCAGAAGAGGGCACCAAGT  429
      ||||||||||||| ||||||||  ||||||
seq2  GCCCTTGGAGGCCTGAAGAGGGTTCCAAGT  430

seq1: chr2_180117564_180118713
seq2: B6Ng01-194J15.g_66_1214 (reverse)

seq1  TAAGTCTCCTCAGAAACACCCTGGCAGA-CGTGTTCAGATGTGTGTTTCC  49
      ||||| ||||||| |||||||||||||| || |||| |||  ||||||||
seq2  TAAGT-TCCTCAG-AACACCCTGGCAGAGCGGGTTC-GAT-AGTGTTTCC  46

seq1  A-CCATGATTCTAAATCCTAGCAGGCTGATAAGGAAGATT-GACTCTCAC  97
      | |||||||||||| |||||||| |||||| ||||||||| |||| ||||
seq2  ACCCATGATTCTAATTCCTAGCA-GCTGAT-AGGAAGATTAGACTTTCAC  94

seq1  ACAAAGAGACATGGTGGAAGGTTCTGGAGTATTCTTGAGAAGGCAGGGAC  147
      || |||||||||| || ||||||||| ||||||| |||||||  ||||| 
seq2  AC-AAGAGACATGTTGAAAGGTTCTGCAGTATTC-TGAGAAGCAAGGGAA  142

seq1  CAACAA-TCTTCTGTCCATTTCACAGCAAGTTCCAGCTCTAGACAGGACT  196
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTCTTCTGTCCATTTCACAGCAAGTTCCAGCTCTAGACAGGACT  192

seq1  GAGTAGGGGAAGTGGGGTTTACTTACAGCATCTTG-GAGAATGGT-CCCA  244
      |||||||||||||||||||||||||||||||||||  |||||||| ||||
seq2  GAGTAGGGGAAGTGGGGTTTACTTACAGCATCTTGAAAGAATGGTCCCCA  242

seq1  AGGGAGCTATAGCTAGGCCCTTGAAGATCCAGGTACCCATGTCCAGGTCT  294
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  AGGGAGCTATAGCTAGGCCCTTGAGATTCCAGGTACCCATGTCCAGGTCT  292

seq1  GAGCCCAGG-AATGGGGGTCAGTGGGGAGAGAGGGTGGACTAGGCCTTCA  343
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGGAAATGGGGGTCAGTGGGGAGAGAGGGTGGACTAGGCCTTCA  342

seq1  GCTAGGTTTGTCTATTTTTCAGTGGAGGAGAAATTCCTGTAAGATAAAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTTTGTCTATTTTTCAGTGGAGGAGAAATTCCTGTAAGATAAAGG  392

seq1  CACCAGGCTGGGAGTGGCATGCATACCTGTAATCCTAGCACTCCAGAGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCTGGGAGTGGCATGCATACCTGTAATCCTAGCACTCCAGAGGT  442

seq1  CCAGACAGGAGGGTTAGAAGTTTGAGGTCATCCCCAGCTACGTGGCAAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGGAGGGTTAGAAGTTTGAGGTCATCCCCAGCTACGTGGCAAGT  492

seq1  TTGCTGGTAACTCGGGTTACATGAGACCCTGTCTCAAAACAAAGATAAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTAACTCGGGTTACATGAGACCCTGTCTCAAAACAAAGATAAAA  542

seq1  GGAACCGTTTTTGAAGAGAACATCCTTGCATAGTATCTACGGTACCCAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCGTTTTTGAAGAGAACATCCTTGCATAGTATCTACGGTACCCAAT  592

seq1  ATTGTGCATCAGTCATTCCTATCTCCCTCTGGATCATCTCATCACCTCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCATCAGTCATTCCTATCTCCCTCTGGATCATCTCATCACCTCCA  642

seq1  GGAGACCCACTTCTCATGAGTCATCCCCTCCTCTCCCACTCCTGAATCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCACTTCTCATGAGTCATCCCCTCCTCTCCCACTCCTGAATCTT  692

seq1  TCTACTCTGGGAGTTTCACATCGAGCACACTCAGCGTGTGGCCCCTGGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTGGGAGTTTCACATCGAGCACACTCAGCGTGTGGCCCCTGGTG  742

seq1  TTGACTCCACATCATAGTTTCAAGAGTCATGGCATGTAGCAGTGCTTTAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCACATCATAGTTTCAAGAGTCATGGCATGTAGCAGTGCTTTAG  792

seq1  ATTTTATCACCAGATAATATTCCATCCTGTCAATGTGCCGTGCATGGTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCACCAGATAATATTCCATCCTGTCAATGTGCCGTGCATGGTTC  842

seq1  CCTGGTCACTAGTGGGTAGCATCTGGGTTGTGCTGTTTATACCACAGATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCACTAGTGGGTAGCATCTGGGTTGTGCTGTTTATACCACAGATG  892

seq1  CCACTGCAGGGGCCTCTCAGACATGTGCCTAGGGGAGCAGTTGCCCAGGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAGGGGCCTCTCAGACATGTGCCTAGGGGAGCAGTTGCCCAGGC  942

seq1  TTAGTAAGATCTCACTGTTGAAGGAGCTGCTTGCATTTTGCAGTGGCATC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGATCTCACTGTTGAAGGAGCTGCTTGCATTTTGCAGTGGCATC  992

seq1  ATTGGCATGGACTGCTCAGGGTGGGAGTGAAGATAAACAGTTGGATGGGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATGGACTGCTCAGGGTGGGAGTGAAGATAAACAGTTGGATGGGA  1042

seq1  GAAGTGTCTCCTCTGTCCTGTTTCCTGGGGGAAGAAATAAGAGGCACACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCTCCTCTGTCCTGTTTCCTGGGGGAAGAAATAAGAGGCACACA  1092

seq1  CCACTCTTGAGAGCTTTGTGTTTGTGGGTACAAGGACAAGCTGGCTTTAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTGAGAGCTTTGTGTTTGTGGGTACAAGGACAAGCTGGCTTTAA  1142

seq1  GGAATTC  1150
      |||||||
seq2  GGAATTC  1149