BAC Information

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BAC

Clone NameB6Ng01-194L21
Chromosome2 (Build37)
Map Location 53,968,828 - 54,158,590
singlet/doubletdoublet
Overlap geneLOC666913, LOC626563
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933, Rprm
Downstream geneLOC100041792, LOC100042878, Galnt13, LOC666936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194L21.bB6Ng01-194L21.g
ACCGA017354GA017355
length784103
definitionB6Ng01-194L21.b B6Ng01-194L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,968,828 - 53,969,611)(54,158,488 - 54,158,590)
sequence
gaattctagattctaatatgaataaaataatataagttgggaggcagaaa
gcagaaatgagtccctttgtacttaagcaggtttccaggatgagtggagt
gttggtgcagaagacagagcgcccttacctagaggaatattacctaggga
tattccttggagagcttttatagagtaatgtatctaggctaagtctctaa
acaaccagtttagtagactgtggatgttttaaaaaaactatcagtaactc
tcatatgttctttgtgttaaaaagaacatattcttattttctaatacaaa
agccagattttctaagagaaatgattaaatttagggctgagacaggaaaa
tacaatatgcatttcaaatgctgtgtaatactggaatgcaagtagattct
caacaagacatgattttcagaaatgtatatgcaaccaacgtgaaggaacc
aaccaacaaccagtgctggaacaatttaaggagtaaaatagtcattgtgg
cagtattgaatttctgcccatgaatgaaataaggcttcatcaatcttaac
aatccatttttaaaatggaattaacaagcaaacagaagaacagatagttc
ttcctcatagtagaatcttagttaataagtgaagaaaggacaagatgttt
ggcaaacactttaaatgcagttaggatccaccaatgtttgttaaaattag
tgggcagagtgattgtggaatccatacctcaacagggctgccttgtctgg
tctcagtgggagagggtgggtctaatcctgcaaa
aagaccagcctaggttacaagttcaaaaacacacatttggataaagaata
agacaataaagaaagaaataaagggaaggaggaagggaggagggaggaga
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_53968828_53969611
seq2: B6Ng01-194L21.b_50_833

seq1  GAATTCTAGATTCTAATATGAATAAAATAATATAAGTTGGGAGGCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATTCTAATATGAATAAAATAATATAAGTTGGGAGGCAGAAA  50

seq1  GCAGAAATGAGTCCCTTTGTACTTAAGCAGGTTTCCAGGATGAGTGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATGAGTCCCTTTGTACTTAAGCAGGTTTCCAGGATGAGTGGAGT  100

seq1  GTTGGTGCAGAAGACAGAGCGCCCTTACCTAGAGGAATATTACCTAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGCAGAAGACAGAGCGCCCTTACCTAGAGGAATATTACCTAGGGA  150

seq1  TATTCCTTGGAGAGCTTTTATAGAGTAATGTATCTAGGCTAAGTCTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTGGAGAGCTTTTATAGAGTAATGTATCTAGGCTAAGTCTCTAA  200

seq1  ACAACCAGTTTAGTAGACTGTGGATGTTTTAAAAAAACTATCAGTAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGTTTAGTAGACTGTGGATGTTTTAAAAAAACTATCAGTAACTC  250

seq1  TCATATGTTCTTTGTGTTAAAAAGAACATATTCTTATTTTCTAATACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTTCTTTGTGTTAAAAAGAACATATTCTTATTTTCTAATACAAA  300

seq1  AGCCAGATTTTCTAAGAGAAATGATTAAATTTAGGGCTGAGACAGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATTTTCTAAGAGAAATGATTAAATTTAGGGCTGAGACAGGAAAA  350

seq1  TACAATATGCATTTCAAATGCTGTGTAATACTGGAATGCAAGTAGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATGCATTTCAAATGCTGTGTAATACTGGAATGCAAGTAGATTCT  400

seq1  CAACAAGACATGATTTTCAGAAATGTATATGCAACCAACGTGAAGGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGACATGATTTTCAGAAATGTATATGCAACCAACGTGAAGGAACC  450

seq1  AACCAACAACCAGTGCTGGAACAATTTAAGGAGTAAAATAGTCATTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAACCAGTGCTGGAACAATTTAAGGAGTAAAATAGTCATTGTGG  500

seq1  CAGTATTGAATTTCTGCCCATGAATGAAATAAGGCTTCATCAATCTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGAATTTCTGCCCATGAATGAAATAAGGCTTCATCAATCTTAAC  550

seq1  AATCCATTTTTAAAATGGAATTAACAAGCAAACAGAAGAACAGATAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTTTAAAATGGAATTAACAAGCAAACAGAAGAACAGATAGTTC  600

seq1  TTCCTCATAGTAGAATCTTAGTTAATAAGTGAAGAAAGGACAAGATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATAGTAGAATCTTAGTTAATAAGTGAAGAAAGGACAAGATGTTT  650

seq1  GGCAAACACTTTAAATGCAGTTAGGATCCACCAATGTTTGTTAAAATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACACTTTAAATGCAGTTAGGATCCACCAATGTTTGTTAAAATTAG  700

seq1  TGGGCAGAGTGATTGTGGAATCCATACCTCAACAGGGCTGCCTTGTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAGTGATTGTGGAATCCATACCTCAACAGGGCTGCCTTGTCTGG  750

seq1  TCTCAGTGGGAGAGGGTGGGTCTAATCCTGCAAA  784
      ||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGGGAGAGGGTGGGTCTAATCCTGCAAA  784

seq1: chr2_54158488_54158590
seq2: B6Ng01-194L21.g_69_171 (reverse)

seq1  TTCTCTCCTCCCTCCTCCCTTCCTCCTTCCCTTTATTTCTTTCTTTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTCCCTCCTCCCTTCCTCCTTCCCTTTATTTCTTTCTTTATTG  50

seq1  TCTTATTCTTTATCCAAATGTGTGTTTTTGAACTTGTAACCTAGGCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCTTTATCCAAATGTGTGTTTTTGAACTTGTAACCTAGGCTGGT  100

seq1  CTT  103
      |||
seq2  CTT  103