BAC Information

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BAC

Clone NameB6Ng01-195A12
Chromosome16 (Build37)2 (Build37)
Map Location 91,911,328 - 91,911,517157,310,674 - 157,311,569
singlet/doubletsingletsinglet
Overlap geneItsn1
Upstream geneLOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653
Downstream geneAtp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195A12.bB6Ng01-195A12.g
ACCGA017564GA017565
length946898
definitionB6Ng01-195A12.b B6Ng01-195A12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,911,328 - 91,911,517)(157,310,674 - 157,311,569)
sequence
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggtttgggatcttcct
gagaaacaagcaataaagctcttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaatagctcacaaccacccataatga
gacctgacaccctcttctggtgtgtctgaagacagctacagtgtacttac
atataataaataaataaatcttttaaaaaaattgtctctaaaacaagaca
atcatgggtttttttgaaagaaagaaagaaagaaagaagaaaggaagaca
ggaagacaggaagacagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagagagagagagaaagaaggaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagagaga
gaaaatggtatctaaaccccaatatttgggcagtaagatgactcagcaga
taaagacactgttggcctgagttcaattccaggaacccatgtaaatgaat
ggagaaattcatgctacaaagttgtcatttttttaaaaaatatttattta
tttattttatgtgtaggagtacaccatagttgtcttcagacacaccagaa
gagagcatcagatcccattacaaatggttgtgagccaccatgtggttgct
gggaattgaactcaggacctctggaagagcagtcagtgctcttaaccgct
gagccatctctccagcccacaagttgtcatttgatcttcacatgtgtgac
aaggtgtgtcctgatctctctctctctctctctctctctctctgtc
gaattcaactttagatactagcagtgagagaaagatgataacgatttcta
aaatgaaagaccttgctggtcagggccaggcctggggacagccctgagtc
tgccctgcaggttccaggagcagttacactgatgggcatagttgactcag
gggctgggagtggagtcaggaggtgtattagttagggttttactgctgtg
aacagacaccatgaccaaggcaagtcttataaaaaaacaacatttaattg
gggctggcttacaggttcagaggttcagtccattatcatcaaggtgggag
catgacagcatccaggcaggcatggtgcaggaggagctgagagttctatg
tcttcatccaaaggctgcttgtggaagactgtcttccaggcaactagggt
cttatacccacactcacagtgacacacccattccaaccaggtcacaccta
ttccaacaaggccacaccttcagatggtgccactccctggtccaaggata
tacaaaccatcacaggaggtgtgagaaagagaccaagagacagacaggag
gtagatgtaaatgaaggagaaacacagggagacagaaagacaaatgggac
ctcaagtatgggctgagtgacagaggaagacaggagcttgaagaaagatc
ctaagatgggagtatgcccaggagtgacagggagtgtgcccaggggtgac
agggtgagttgccacctgaggggtggttttggtcttgagaagagcccagg
ccaatgctaggaaacatcttagagtccctagggtgtagtttgacatctgg
ggcgaaaggctgtgctttaaactcgtgggccactggtagctagcagaagc
tgggcttgagagagttcgattcctgtgacagtgggggcctgtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91911328_91911517
seq2: B6Ng01-195A12.b_721_912 (reverse)

seq1  TGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGA  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGA  50

seq1  -ATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT  99
        |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATTTGT  100

seq1  AATGGGATCCGATGCCTTCTTCTGGTGTGTCTGAAGAGAGCAATGGCGGT  149
      ||||||||| |||||  |||||||||||||||||||| | | ||   |||
seq2  AATGGGATCTGATGCTCTCTTCTGGTGTGTCTGAAGACAACTAT---GGT  147

seq1  GTACTCATATAAATAAAATAAATAAATAAA----TCTTAAAAAAA  190
      |||||| || | ||||||||||||||||||    | |||||||||
seq2  GTACTCCTACACATAAAATAAATAAATAAATATTTTTTAAAAAAA  192

seq1: chr2_157310674_157311569
seq2: B6Ng01-195A12.g_64_961

seq1  GAATTCAACTTTAGATACTAGCAGTGAGAGAAAGATGATAACGATTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTAGATACTAGCAGTGAGAGAAAGATGATAACGATTTCTA  50

seq1  AAATGAAAGACCTTGCTGGTCAGGGCCAGGCCTGGGGACAGCCCTGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGACCTTGCTGGTCAGGGCCAGGCCTGGGGACAGCCCTGAGTC  100

seq1  TGCCCTGCAGGTTCCAGGAGCAGTTACACTGATGGGCATAGTTGACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGCAGGTTCCAGGAGCAGTTACACTGATGGGCATAGTTGACTCAG  150

seq1  GGGCTGGGAGTGGAGTCAGGAGGTGTATTAGTTAGGGTTTTACTGCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGAGTGGAGTCAGGAGGTGTATTAGTTAGGGTTTTACTGCTGTG  200

seq1  AACAGACACCATGACCAAGGCAAGTCTTATAAAAAAACAACATTTAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACACCATGACCAAGGCAAGTCTTATAAAAAAACAACATTTAATTG  250

seq1  GGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAG  300

seq1  CATGACAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTATG  350

seq1  TCTTCATCCAAAGGCTGCTTGTGGAAGACTGTCTTCCAGGCAACTAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCCAAAGGCTGCTTGTGGAAGACTGTCTTCCAGGCAACTAGGGT  400

seq1  CTTATACCCACACTCACAGTGACACACCCATTCCAACCAGGTCACACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACCCACACTCACAGTGACACACCCATTCCAACCAGGTCACACCTA  450

seq1  TTCCAACAAGGCCACACCTTCAGATGGTGCCACTCCCTGGTCCAAGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACAAGGCCACACCTTCAGATGGTGCCACTCCCTGGTCCAAGGATA  500

seq1  TACAAACCATCACAGGAGGTGTGAGAAAGAGACCAAGAGACAGACAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACCATCACAGGAGGTGTGAGAAAGAGACCAAGAGACAGACAGGAG  550

seq1  GTAGATGTAAATGAAGGAGAAACACAGGGAGACAGAAAGACAAATGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTAAATGAAGGAGAAACACAGGGAGACAGAAAGACAAATGGGAC  600

seq1  CTCAAGTATGGGCTGAGTGACAGAGGAAGACAGGAGCTTGAAGAAAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTATGGGCTGAGTGACAGAGGAAGACAGGAGCTTGAAGAAAGATC  650

seq1  CTAAGATGGGAGTATGCCCAGGAGTGACAGGGAGTGTGCCCAGGGGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGGGAGTATGCCCAGGAGTGACAGGGAGTGTGCCCAGGGGTGAC  700

seq1  AGGGTGAGTTGCCACCTGAGGGGTGGTTTTGGTCTTGAGAAGAGCCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGTTGCCACCTGAGGGGTGGTTTTGGTCTTGAGAAGAGCCCAGG  750

seq1  CCAATGCTAGGAAACATCTTAGGAGTCCCTAGGGTGTAGTTTGACATCTG  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCAATGCTAGGAAACATCTTA-GAGTCCCTAGGGTGTAGTTTGACATCTG  799

seq1  GGGCG-AAGGCTGTGCTTTAAACCCGTGGGCCACTGGTAGCTAGCAGAAG  849
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGGCGAAAGGCTGTGCTTTAAACTCGTGGGCCACTGGTAGCTAGCAGAAG  849

seq1  CTGGGCTTGAGAGAGTTCGA-TCCTGTGACAGTGGGGG-CTGTGGGGGG  896
      |||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  CTGGGCTTGAGAGAGTTCGATTCCTGTGACAGTGGGGGCCTGTGGGGGG  898