BAC Information

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BAC

Clone NameB6Ng01-195P13
Chromosome2 (Build37)
Map Location 119,392,653 - 119,535,711
singlet/doubletdoublet
Overlap gene1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1
Upstream geneLOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1
Downstream geneItpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195P13.bB6Ng01-195P13.g
ACCGA018245GA018246
length6871,176
definitionB6Ng01-195P13.b B6Ng01-195P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,392,653 - 119,393,211)(119,534,554 - 119,535,711)
sequence
gaattcaattggcacccctaattttcatatatagattatctcttgttttt
ctcccagcttggtttttcttgtatttatttttgtgtctgtgtgtccacca
cctgtatggtgccatcggagagtattagattttctggaacaggaattgtg
ggtgattatgagctgttatgttgctggaaattacacccagggctccatag
tgataaagcactatgatcagaagcaacttagggaagaaagggtttattac
agctgacagttctaaatcacagcccatcattgaaggaggtcaggtcaggg
actgaagggtggaacctgcaggcaggaatcatggaggagctgcttactag
cttgcttagcttattttcttacactacccaggaccatgggcccaggggta
gcaccacccataaaaatgctgggcattcccacatcattcaatttaaagaa
aataccctgaaggtagctggggcagtggtggtacacaccttcaatcctag
cactcagaaggcagaggtaggtggatatctgagtttggttggaatttgag
gcctgcctggtctatagagctgttctaagacagccagagctatgtacgca
aagaaactctgtctcaaacaaaacaaaacaaaacaaacaaaaagctccca
aaagccaaaggcacgtcttacaggctattctgggttc
gaattcccaactaagacacagtgcattatgcatgctagaaaaaaaggcca
gaacaactttaatggcaaattcacaaacaaactacagcatatatgtataa
tggaatgctactcagctctaacagggaatgaagtgccaataaatgctaca
tggactaattaaaaaaaacccaagctaagtgaagttaagcatttggtgta
tatccctgtgtcccacttgggggtcggcactaaggtgtaaggactaattg
agctcaggaggagactctctagggactggagaaatggctcctccatgctt
aggtgcacaggcctgggttggattaccagaactcaatgcagtagttacag
ccatttgtaagtccagatctgggtgacctgatgtcctcttctaacttctg
caggcaccaggcacttacatggcacacagacacacatgaagggaatacac
ccagacagaaaaacagtttaagccggttatggtggcgctcgcctttaatc
ccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcc
tggtctacagagtgagttccaggacagccagggctatacagagaaaccct
gtctcgaaaaaactaaaacaacaacaacaacatttaaaaatggtaataat
aataataataataaaagaaagaagtggacagtttgtagctcgggccttta
atcccagcaatcaggaggccaaagcaagggatctctgagagttcaaggcc
agactggtctacaaagaatagttttcaggacagccacagctatgcagaga
aaccctatcttgaaaactaaaaacaaaacagcaaaaaccaaaatcaaaca
acaaacaaaaaagaaacccccaaacccaaaactttccaaaacagcaagaa
aggtgaagagagttttttgagtggcctatcattgtactgcctccagagct
acagaaatatcatggagctcaaggagctttgtcaccacccttccacattc
tttttagctgcttaaaaattgtcacttaaattaccacctgctcttaaggg
caaaaaatagagctcaagtgatggcctacttccaagctttggagaaaaat
cctgccttcagtttggaatccccaggttcgctcaatttaccattaaaagg
ataaatcctcactttttagtctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119392653_119393211
seq2: B6Ng01-195P13.b_45_603

seq1  GAATTCAATTGGCACCCCTAATTTTCATATATAGATTATCTCTTGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGGCACCCCTAATTTTCATATATAGATTATCTCTTGTTTTT  50

seq1  CTCCCAGCTTGGTTTTTCTTGTATTTATTTTTGTGTCTGTGTGTCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCTTGGTTTTTCTTGTATTTATTTTTGTGTCTGTGTGTCCACCA  100

seq1  CCTGTATGGTGCCATCGGAGAGTATTAGATTTTCTGGAACAGGAATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGGTGCCATCGGAGAGTATTAGATTTTCTGGAACAGGAATTGTG  150

seq1  GGTGATTATGAGCTGTTATGTTGCTGGAAATTACACCCAGGGCTCCATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTATGAGCTGTTATGTTGCTGGAAATTACACCCAGGGCTCCATAG  200

seq1  TGATAAAGCACTATGATCAGAAGCAACTTAGGGAAGAAAGGGTTTATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGCACTATGATCAGAAGCAACTTAGGGAAGAAAGGGTTTATTAC  250

seq1  AGCTGACAGTTCTAAATCACAGCCCATCATTGAAGGAGGTCAGGTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAGTTCTAAATCACAGCCCATCATTGAAGGAGGTCAGGTCAGGG  300

seq1  ACTGAAGGGTGGAACCTGCAGGCAGGAATCATGGAGGAGCTGCTTACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGGTGGAACCTGCAGGCAGGAATCATGGAGGAGCTGCTTACTAG  350

seq1  CTTGCTTAGCTTATTTTCTTACACTACCCAGGACCATGGGCCCAGGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTAGCTTATTTTCTTACACTACCCAGGACCATGGGCCCAGGGGTA  400

seq1  GCACCACCCATAAAAATGCTGGGCATTCCCACATCATTCAATTTAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCCATAAAAATGCTGGGCATTCCCACATCATTCAATTTAAAGAA  450

seq1  AATACCCTGAAGGTAGCTGGGGCAGTGGTGGTACACACCTTCAATCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTGAAGGTAGCTGGGGCAGTGGTGGTACACACCTTCAATCCTAG  500

seq1  CACTCAGAAGGCAGAGGTAGGTGGATATCTGAGTTTGGTTGGAATTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAAGGCAGAGGTAGGTGGATATCTGAGTTTGGTTGGAATTTGAG  550

seq1  GCCTGCCTG  559
      |||||||||
seq2  GCCTGCCTG  559

seq1: chr2_119534554_119535711
seq2: B6Ng01-195P13.g_67_1242 (reverse)

seq1  TTTTATGACT-AAAAGTGA-GTTTTAT-CTTTTTATGGTAA--TGGACGA  45
      ||||| |||| |||||||| | ||||| ||||| |||||||  ||  |||
seq2  TTTTA-GACTAAAAAGTGAGGATTTATCCTTTTAATGGTAAATTGAGCGA  49

seq1  A-CTGGGGAT--CAAACTGAA-GCAG--ATTTTCTC--AAGCTTGGAAAG  87
      | ||||||||  ||||||||| ||||   |||||||  |||||||| |||
seq2  ACCTGGGGATTCCAAACTGAAGGCAGGATTTTTCTCCAAAGCTTGG-AAG  98

seq1  TATGCCATCAC-TGAGCCTCTATTTTTCCCCTTTAAGAAGCAGGTGGTA-  135
      || |||||||| |||| ||||||||||  || ||||| ||||||||||| 
seq2  TAGGCCATCACTTGAG-CTCTATTTTTTGCCCTTAAG-AGCAGGTGGTAA  146

seq1  -TTTAGTGACA--TTTTTAGCAGCT-AAAAGAATGTGGAA-GGTGGTGAC  180
       || |||||||  |||| ||||||| |||||||||||||| |||||||||
seq2  TTTAAGTGACAATTTTTAAGCAGCTAAAAAGAATGTGGAAGGGTGGTGAC  196

seq1  AAAGCTCC-TGAGCTCCATGATA-TTCTGTAGCTCTGGA-GCAGTAC-AT  226
      |||||||| |||||||||||||| ||||||||||||||| ||||||| ||
seq2  AAAGCTCCTTGAGCTCCATGATATTTCTGTAGCTCTGGAGGCAGTACAAT  246

seq1  GATA-GCCACTCAAAAAACTCTCTTCACCTTTTCTTGCTGTTTTGGAAAG  275
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATAGGCCACTCAAAAAACTCTCTTCACC-TTTCTTGCTGTTTTGGAAAG  295

seq1  TTTTGGGTTTGGGGGTTTCTTTTTTGTTTGTTTGTTTGATTTTGGTTTTT  325
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TTTTGGGTTTGGGGGTTTCTTTTTTGTTTG-TTGTTTGATTTTGG-TTTT  343

seq1  TGCTGTTTTTGTTTTTAGTTTTTCAAGATAGGGTTTCTCTGCATAGCTGT  375
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCTG-TTTTGTTTTTAG-TTTTCAAGATAGGGTTTCTCTGCATAGCTGT  391

seq1  GGCTGTCCTG-AAACTATTCTTTGTAGACCAGTCTGGCCTTGAACTCTCA  424
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGAAAACTATTCTTTGTAGACCAGTCTGGCCTTGAACTCTCA  441

seq1  GAGATCCCTTGCTTTGGCCTCCTGATTGCTGGGATTAAAGGCCCGAGCTA  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCCTTGCTTTGGCCTCCTGATTGCTGGGATTAAAGGCCCGAGCTA  491

seq1  C-AACTGTCCACTTCTTTCTTTTATTATTATTATTATTATTACCATTTTT  523
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGTCCACTTCTTTCTTTTATTATTATTATTATTATTACCATTTTT  541

seq1  AAATGTTGTTGTTGTTGTTTTAGTTTTTTCGAGACAGGGTTTCTCTGTAT  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTTGTTGTTGTTTTAGTTTTTTCGAGACAGGGTTTCTCTGTAT  591

seq1  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  641

seq1  CAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGAGCG  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGAGCG  691

seq1  CCACCATAACCGGCTTAAACTGTTTTTCTGTCTGGGTGTATTCCCTTCAT  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATAACCGGCTTAAACTGTTTTTCTGTCTGGGTGTATTCCCTTCAT  741

seq1  GTGTGTCTGTGTGCCATGTAAGTGCCTGGTGCCTGCAGAAGTTAGAAGAG  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTGTGCCATGTAAGTGCCTGGTGCCTGCAGAAGTTAGAAGAG  791

seq1  GACATCAGGTCACCCAGATCTGGACTTACAAATGGCTGTAACTACTGCAT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGGTCACCCAGATCTGGACTTACAAATGGCTGTAACTACTGCAT  841

seq1  TGAGTTCTGGTAATCCAACCCAGGCCTGTGCACCTAAGCATGGAGGAGCC  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGGTAATCCAACCCAGGCCTGTGCACCTAAGCATGGAGGAGCC  891

seq1  ATTTCTCCAGTCCCTAGAGAGTCTCCTCCTGAGCTCAATTAGTCCTTACA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCAGTCCCTAGAGAGTCTCCTCCTGAGCTCAATTAGTCCTTACA  941

seq1  CCTTAGTGCCGACCCCCAAGTGGGACACAGGGATATACACCAAATGCTTA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGCCGACCCCCAAGTGGGACACAGGGATATACACCAAATGCTTA  991

seq1  ACTTCACTTAGCTTGGGTTTTTTTTAATTAGTCCATGTAGCATTTATTGG  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTTAGCTTGGGTTTTTTTTAATTAGTCCATGTAGCATTTATTGG  1041

seq1  CACTTCATTCCCTGTTAGAGCTGAGTAGCATTCCATTATACATATATGCT  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATTCCCTGTTAGAGCTGAGTAGCATTCCATTATACATATATGCT  1091

seq1  GTAGTTTGTTTGTGAATTTGCCATTAAAGTTGTTCTGGCCTTTTTTTCTA  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTGTTTGTGAATTTGCCATTAAAGTTGTTCTGGCCTTTTTTTCTA  1141

seq1  GCATGCATAATGCACTGTGTCTTAGTTGGGAATTC  1158
      |||||||||||||||||||||||||||||||||||
seq2  GCATGCATAATGCACTGTGTCTTAGTTGGGAATTC  1176