BAC Information

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BAC

Clone NameB6Ng01-196J20
Chromosome2 (Build37)
Map Location 24,886,221 - 25,005,295
singlet/doubletdoublet
Overlap genePnpla7, Nelf, Entpd8, Noxa1
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41
Downstream geneNrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196J20.bB6Ng01-196J20.g
ACCGA018710GA018711
length949735
definitionB6Ng01-196J20.b B6Ng01-196J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,886,221 - 24,886,936)(25,004,565 - 25,005,295)
sequence
gaattctctatgtagaccaggctggctttgaactcacagaaatcagtctg
cccctgcttccacagtcctggaattaaaggcatgtgtcccccatgcctgg
cttgtttggtattcttgaaacatactacaggtgtagaggaagtcccgttc
atttgaggtgacactggtcggatagtttaagcagagtccagtgcaatgtt
gggttgctcgatagagaaaacttctttattttgagacaattgtaggataa
caagaaatggccaatcaatgaggaaaggcccccatggcctttcccagtgt
cacctctgatgacactgtatatgaggctaagatcagcaacatgatatttt
gtattctgtaaaggttagctccagattcattagctgtttttgtgtatgta
tatacacatgtatgtatgtgaatgcacatgtgcttcctcctttgacacag
acatagctaagaccacaccaaagctgcaactctcattgctatagaaacct
tgcagctgccacttagaagccgccacattctatcaactccctactgactg
atatctaaacagctgtccttgatactgactgctatccttctgatctgaga
aatttatacacatagaattatagcatgtggccatatgagatttctttttt
caaatacggagcccttcacacactggcatgccatctttgttcagaggcca
tgctaatctttgtactttttcagttttagtatatgtgctgccagagcaag
catggcttgctttcttttactgctagagtgtattcacaccactaaaggca
tgattcagttaacttagttacccattattgaagggtgcttggatggtttc
cagtttgggaatattgtgaattaaattgctgttatcatttgtgtagtaga
tgtgttagggtctagggagttgccccacaaaccacaatgaacaccaatg
gaattcagaaacacaggccaaacaaacaatgctccacagaggaccttggg
taggtgcacagagtgggaagtaatggaggggagggagaaattcaacggct
gccttcaggaaagacctaccatgatctagggtaaaagctgctgcctcatg
tctgtgtgtcccaggcttagactctgactcctttccccaagagtcctgag
taaggagcctcaagtacctgccttcctggggagggttgcggccacctgtg
gtgtgggatcctgtgatgctggtctctccctgtgtctcctgcccaggtcc
catgagtggcagaagtggtcaggctttctgcacagggctgggtgcacctt
cactgagcaggaggcatctgcagccaagtgggcagagacagctttagttg
cagcgtatggagaggtgccttagttaaggtcactattgctctgatgaagc
accatgaccaaagcgacttggggaggaaaggcttatctggctcacactac
agcagtgtcatcaccatcagaggaaaccaggataggaactcaaacagggc
aggaacctggaggcaggagtggatgtagaggccatggagaggtgctgctt
attggctcgctcagcttcttttttatagaactcctgacctcagggggtgt
cacccctatcaatcgctaatttaagaaaatgttctacaggcttgcctaca
gcctagtccttatggaaatcatttctcaattggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24886221_24886936
seq2: B6Ng01-196J20.b_47_762

seq1  GAATTCTCTATGTAGACCAGGCTGGCTTTGAACTCACAGAAATCAGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTAGACCAGGCTGGCTTTGAACTCACAGAAATCAGTCTG  50

seq1  CCCCTGCTTCCACAGTCCTGGAATTAAAGGCATGTGTCCCCCATGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTTCCACAGTCCTGGAATTAAAGGCATGTGTCCCCCATGCCTGG  100

seq1  CTTGTTTGGTATTCTTGAAACATACTACAGGTGTAGAGGAAGTCCCGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGGTATTCTTGAAACATACTACAGGTGTAGAGGAAGTCCCGTTC  150

seq1  ATTTGAGGTGACACTGGTCGGATAGTTTAAGCAGAGTCCAGTGCAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGTGACACTGGTCGGATAGTTTAAGCAGAGTCCAGTGCAATGTT  200

seq1  GGGTTGCTCGATAGAGAAAACTTCTTTATTTTGAGACAATTGTAGGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTCGATAGAGAAAACTTCTTTATTTTGAGACAATTGTAGGATAA  250

seq1  CAAGAAATGGCCAATCAATGAGGAAAGGCCCCCATGGCCTTTCCCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATGGCCAATCAATGAGGAAAGGCCCCCATGGCCTTTCCCAGTGT  300

seq1  CACCTCTGATGACACTGTATATGAGGCTAAGATCAGCAACATGATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGATGACACTGTATATGAGGCTAAGATCAGCAACATGATATTTT  350

seq1  GTATTCTGTAAAGGTTAGCTCCAGATTCATTAGCTGTTTTTGTGTATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGTAAAGGTTAGCTCCAGATTCATTAGCTGTTTTTGTGTATGTA  400

seq1  TATACACATGTATGTATGTGAATGCACATGTGCTTCCTCCTTTGACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATGTATGTATGTGAATGCACATGTGCTTCCTCCTTTGACACAG  450

seq1  ACATAGCTAAGACCACACCAAAGCTGCAACTCTCATTGCTATAGAAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTAAGACCACACCAAAGCTGCAACTCTCATTGCTATAGAAACCT  500

seq1  TGCAGCTGCCACTTAGAAGCCGCCACATTCTATCAACTCCCTACTGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGCCACTTAGAAGCCGCCACATTCTATCAACTCCCTACTGACTG  550

seq1  ATATCTAAACAGCTGTCCTTGATACTGACTGCTATCCTTCTGATCTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAAACAGCTGTCCTTGATACTGACTGCTATCCTTCTGATCTGAGA  600

seq1  AATTTATACACATAGAATTATAGCATGTGGCCATATGAGATTTCTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATACACATAGAATTATAGCATGTGGCCATATGAGATTTCTTTTTT  650

seq1  CAAATACGGAGCCCTTCACACACTGGCATGCCATCTTTGTTCAGAGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACGGAGCCCTTCACACACTGGCATGCCATCTTTGTTCAGAGGCCA  700

seq1  TGCTAATCTTTGTACT  716
      ||||||||||||||||
seq2  TGCTAATCTTTGTACT  716

seq1: chr2_25004565_25005295
seq2: B6Ng01-196J20.g_68_802 (reverse)

seq1  TCCCAATTGAGAAATGA-TTCCATAA-GACTAGGCTGTAGGCAAGCCTGT  48
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TCCCAATTGAGAAATGATTTCCATAAGGACTAGGCTGTAGGCAAGCCTGT  50

seq1  AGAACATTTTCTT-AATTAGCGATTGATAGGGGTGACA-CCCCTGAGGTC  96
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  AGAACATTTTCTTAAATTAGCGATTGATAGGGGTGACACCCCCTGAGGTC  100

seq1  AGGAGTTCTATAAAAAAGAAGCTGAGCGAGCCAATAAGCAGCACCTCTCC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCTATAAAAAAGAAGCTGAGCGAGCCAATAAGCAGCACCTCTCC  150

seq1  ATGGCCTCTACATCCACTCCTGCCTCCAGGTTCCTGCCCTGTTTGAGTTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCTACATCCACTCCTGCCTCCAGGTTCCTGCCCTGTTTGAGTTC  200

seq1  CTATCCTGGTTTCCTCTGATGGTGATGACACTGCTGTAGTGTGAGCCAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGGTTTCCTCTGATGGTGATGACACTGCTGTAGTGTGAGCCAGA  250

seq1  TAAGCCTTTCCTCCCCAAGTCGCTTTGGTCATGGTGCTTCATCAGAGCAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTTCCTCCCCAAGTCGCTTTGGTCATGGTGCTTCATCAGAGCAA  300

seq1  TAGTGACCTTAACTAAGGCACCTCTCCATACGCTGCAACTAAAGCTGTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACCTTAACTAAGGCACCTCTCCATACGCTGCAACTAAAGCTGTCT  350

seq1  CTGCCCACTTGGCTGCAGATGCCTCCTGCTCAGTGAAGGTGCACCCAGCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACTTGGCTGCAGATGCCTCCTGCTCAGTGAAGGTGCACCCAGCC  400

seq1  CTGTGCAGAAAGCCTGACCACTTCTGCCACTCATGGGACCTGGGCAGGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAAAGCCTGACCACTTCTGCCACTCATGGGACCTGGGCAGGAG  450

seq1  ACACAGGGAGAGACCAGCATCACAGGATCCCACACCACAGGTGGCCGCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGAGAGACCAGCATCACAGGATCCCACACCACAGGTGGCCGCAA  500

seq1  CCCTCCCCAGGAAGGCAGGTACTTGAGGCTCCTTACTCAGGACTCTTGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCAGGAAGGCAGGTACTTGAGGCTCCTTACTCAGGACTCTTGGG  550

seq1  GAAAGGAGTCAGAGTCTAAGCCTGGGACACACAGACATGAGGCAGCAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGTCAGAGTCTAAGCCTGGGACACACAGACATGAGGCAGCAGCT  600

seq1  TTTACCCTAGATCATGGTAGGTCTTTCCTGAAGGCAGCCGTTGAATTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTAGATCATGGTAGGTCTTTCCTGAAGGCAGCCGTTGAATTTCT  650

seq1  CCCTCCCCTCCATTACTTCCCACTCTGTGCACCTACCCAAGGTCCTCTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTCCATTACTTCCCACTCTGTGCACCTACCCAAGGTCCTCTGT  700

seq1  GGAGCATTGTTTGTTTGGCCTGTGTTTCTGAATTC  731
      |||||||||||||||||||||||||||||||||||
seq2  GGAGCATTGTTTGTTTGGCCTGTGTTTCTGAATTC  735