BAC Information

Click to search

BAC

Clone NameB6Ng01-196P22
Chromosome2 (Build37)
Map Location 104,713,123 - 104,911,126
singlet/doubletdoublet
Overlap geneCcdc73, Ga17, 2210415I11Rik, LOC622356
Upstream geneLmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
Downstream geneWt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196P22.bB6Ng01-196P22.g
ACCGA018986GA018987
length1,034282
definitionB6Ng01-196P22.b B6Ng01-196P22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,713,123 - 104,714,169)(104,910,845 - 104,911,126)
sequence
gaattcaccctagaagtaaatttaaccagagttagattcaatataaactc
catgaagaaaactagagaactttactgaaggaataggaggacaccctaaa
taaagggaaatatcacgtccaaggaaggttgggttcttcctaatacagcc
caattcaatatgatagggcaaaaattccatcaggaccacttgtggaaagt
tgacattaaccattctgaaagtgatctggagaaacagaagattaaaaata
accaaggctctattagaggaaaatatggcggaaggagaatcgcccgatca
gataataacaagacttacagagctatgtcgattaagatggtaagatacca
gactgatataattaatggggtagaatatagtcctggcaacagacaaggag
aattcatgactttaaaccacatttcaatagatttggcattgacttcataa
gaatttaaagggctgtttcagatatcacactggacaattcatttttcaca
tggaaagatttttaatcttcatataatatatgaaaatatactttgggcta
tttaaagacttatatgtgaacagtaaaaatgaaagatcattgaaaatagc
tgggcatggtggcaaactcctttaatctcatgctcaggctgcagaggtag
gaagacctcttgagactgaggccagcctgatctacacagtaagctgcagg
acagtcagggctgcatagtgagatctgcctcaaaacaaacaaacaaacaa
acaaacaacaaacaaacattttcagcaaaatacctgtgaaaaaaattgaa
ataagttccaaagaaaaaaaaaaaaaaacctcaagcaggtaaccgagaaa
caccctttaaatgtataaagggtctggagagatggctcagcggttaagag
cactgattgctcttcccaaggtcttgagttcaaatcccagcaaccacata
tagctcacatcatctatagggaaatctgacgcctcttcagcaggcagatg
tatatgcagcgaccccacatacattaataataaa
gtgagcatgagaagagcaggcgggcaatgggctggagctctgacgtcctg
aaaaccctagggaggactcctctcaaaggagagggatgatgcagagagtt
tattaggatgcagggctggattctctgtccgctgatggaaagagatggaa
gggacagccacagaccaagggaagacaatgaggaaatgtaaattaggtac
aagataaatacaaaggggttgggagtcacaaatgtgggctggaagtgtaa
cgtagtgggagagaggtgggaagggaagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_104713123_104714169
seq2: B6Ng01-196P22.b_45_1078

seq1  GAATTCACCCTAGAAGTAAATTTAACCAGAGTTAGATTCAATATAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTAGAAGTAAATTTAACCAGAGTTAGATTCAATATAAACTC  50

seq1  CATGAAGAAAACTAGAGAACTTTACTGAAGGAATAGGAGGACACCCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAAAACTAGAGAACTTTACTGAAGGAATAGGAGGACACCCTAAA  100

seq1  TAAAGGGAAATATCACGTCCAAGGAAGGTTGGGTTCTTCCTAATACAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGAAATATCACGTCCAAGGAAGGTTGGGTTCTTCCTAATACAGCC  150

seq1  CAATTCAATATGATAGGGCAAAAATTCCATCAGGACCACTTGTGGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATATGATAGGGCAAAAATTCCATCAGGACCACTTGTGGAAAGT  200

seq1  TGACATTAACCATTCTGAAAGTGATCTGGAGAAACAGAAGATTAAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAACCATTCTGAAAGTGATCTGGAGAAACAGAAGATTAAAAATA  250

seq1  ACCAAGGCTCTATTAGAGGAAAATATGGCGGAAGGAGAATCGCCCGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCTCTATTAGAGGAAAATATGGCGGAAGGAGAATCGCCCGATCA  300

seq1  GATAATAACAAGACTTACAGAGCTATGTCGATTAAGATGGTAAGATACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAACAAGACTTACAGAGCTATGTCGATTAAGATGGTAAGATACCA  350

seq1  GACTGATATAATTAATGGGGTAGAATATAGTCCTGGCAACAGACAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATATAATTAATGGGGTAGAATATAGTCCTGGCAACAGACAAGGAG  400

seq1  AATTCATGACTTTAAACCACATTTCAATAGATTTGGCATTGACTTCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGACTTTAAACCACATTTCAATAGATTTGGCATTGACTTCATAA  450

seq1  GAATTTAAAGGGCTGTTTCAGATATCACACTGGACAATTCATTTTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAAGGGCTGTTTCAGATATCACACTGGACAATTCATTTTTCACA  500

seq1  TGGAAAGATTTTTAATCTTCATATAATATATGAAAATATACTTTGGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGATTTTTAATCTTCATATAATATATGAAAATATACTTTGGGCTA  550

seq1  TTTAAAGACTTATATGTGAACAGTAAAAATGAAAGATCATTGAAAATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACTTATATGTGAACAGTAAAAATGAAAGATCATTGAAAATAGC  600

seq1  TGGGCATGGTGGCAAACTCCTTTAATCTCATGCTCAGGCTGCAGAGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGGTGGCAAACTCCTTTAATCTCATGCTCAGGCTGCAGAGGTAG  650

seq1  GAAGACCTCTTGAGACTGAGGCCAGCCTGATCTACACAGTAAGCTGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTCTTGAGACTGAGGCCAGCCTGATCTACACAGTAAGCTGCAGG  700

seq1  ACAGTCAGGGCTGCATAGTGAGATCTGCCTCAAAACAAACAAACAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGGGCTGCATAGTGAGATCTGCCTCAAAACAAACAAACAAACAA  750

seq1  ACAAACAAACAAACAAACAAACATTTTCAGCAAAATACCTGTGAAAAAAA  800
      ||||||     |||||||||||||||||||||||||||||||||||||||
seq2  ACAAAC-----AACAAACAAACATTTTCAGCAAAATACCTGTGAAAAAAA  795

seq1  TTGAAAATAAGTTCCAAAAGAAAAAAAAAAAAAACCTCAAAGCAGGTAAC  850
      ||| ||||||||||||||  |||||||||||||||||| |||||||||||
seq2  TTG-AAATAAGTTCCAAAGAAAAAAAAAAAAAAACCTC-AAGCAGGTAAC  843

seq1  CGAGAAACAACCTTTAAAATGTATAAAAGGGGTCTGGAGAGATGGCTCAG  900
      ||||||||| ||||| |||||||||||  |||||||||||||||||||||
seq2  CGAGAAACACCCTTT-AAATGTATAAA--GGGTCTGGAGAGATGGCTCAG  890

seq1  CGGTTAAGAGCACTGATTGCTCTTCCAAAGGTCTTGAGTTCAAATCCCAG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CGGTTAAGAGCACTGATTGCTCTTCCCAAGGTCTTGAGTTCAAATCCCAG  940

seq1  CAACCACATATTAGCTCACAACCATCTATAGGGAAATCTGACGCCCTCTT  1000
      |||||||||| |||||||| | ||||||||||||||||||||| ||||||
seq2  CAACCACATA-TAGCTCAC-ATCATCTATAGGGAAATCTGACG-CCTCTT  987

seq1  CAGGCAGGCAGATGTATATGCAGCAGAACACACATACATTA--AATAAA  1047
      || ||||||||||||||||||||| || | |||||||||||  ||||||
seq2  CA-GCAGGCAGATGTATATGCAGC-GACCCCACATACATTAATAATAAA  1034

seq1: chr2_104910845_104911126
seq2: B6Ng01-196P22.g_72_353 (reverse)

seq1  TCCTCTTCCCTTCCCACCTCTCTCCCACTACGTTACACTTCCAGCCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCCTTCCCACCTCTCTCCCACTACGTTACACTTCCAGCCCACA  50

seq1  TTTGTGACTCCCAACCCCTTTGTATTTATCTTGTACCTAATTTACATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTCCCAACCCCTTTGTATTTATCTTGTACCTAATTTACATTTC  100

seq1  CTCATTGTCTTCCCTTGGTCTGTGGCTGTCCCTTCCATCTCTTTCCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTCTTCCCTTGGTCTGTGGCTGTCCCTTCCATCTCTTTCCATCA  150

seq1  GCGGACAGAGAATCCAGCCCTGCATCCTAATAAACTCTCTGCATCATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGACAGAGAATCCAGCCCTGCATCCTAATAAACTCTCTGCATCATCCC  200

seq1  TCTCCTTTGAGAGGAGTCCTCCCTAGGGTTTTCAGGACGTCAGAGCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTGAGAGGAGTCCTCCCTAGGGTTTTCAGGACGTCAGAGCTCCA  250

seq1  GCCCATTGCCCGCCTGCTCTTCTCATGCTCAC  282
      ||||||||||||||||||||||||||||||||
seq2  GCCCATTGCCCGCCTGCTCTTCTCATGCTCAC  282