BAC Information

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BAC

Clone NameB6Ng01-197H17
Chromosome2 (Build37)
Map Location 101,343,731 - 101,486,677
singlet/doubletdoublet
Overlap geneB230118H07Rik, Rag2, Rag1
Upstream geneLOC668705
Downstream geneLOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197H17.bB6Ng01-197H17.g
ACCGA019333GA019334
length1,1551,133
definitionB6Ng01-197H17.b B6Ng01-197H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,485,502 - 101,486,677)(101,343,731 - 101,344,570)
sequence
gaattcaaaagaaatgttgctagcagaatccaggactattctttagctcc
ttcacgatttccctgatgcccaaagtcccactcctggtcaaaatgtgttc
atctggggcatcgtgttcctgactacatggctagaaagctcattgagttg
gttaatctgttgaggggaaaatgagcttctagacataagttgtaggtcaa
aagagttaacgtaatcacagctgggaagcatgggtgagctagagaactgt
aggacatgtgatctaattccagaggactcagaggacactgcttactctcc
tctacacagtgtttgatatttatattgtaattggcatattttatttagtg
ttttttactactactattttttgttgttgttttagatttatttattttct
gtagatgagtacactgtagctatcttcagacacaccagaagagggcagca
gatccccttacggatggtcataagccaccatgtggttgctgggaactgaa
ctcaggacctctggaagagcagtcagtgctcttaccatggagccatctct
ccagtcccctgttttcactcttgaggcagggtttcattatttagtccagg
gtggcctagaactctctagagtcagccaggctggtctcagacttgtcttg
cttcttctgctcctcttctttagtactggattcacagacaagcaccatca
ttttcttctgtgattaaaaaaaaaatctttactttttgacattataatga
aactatatcacttccctcacctgtaatatttttaaccagaagataattat
tcctcgtatctcttatcattactaactggagtgctaatgacctttggttt
gcactgactttcaggatgacctgtgtgagttttgtctgaaactacttgaa
gtttcatcttagagtctgtcagcctcttagtattctcgtgctatggtttg
ttgcagttaagagctctgtggttcttgttttccatgtagaccagccttct
atttacagcagcatcgctaatttaaattgtagcatatactattccatgat
acttatatagcttacgtcataagctcaaaaattcacttcattcgtcaggt
agtgagtatagtttctttggtgtagcttatcatctctttatgaccgttcg
aagaa

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaatgatcctttcccaatctgttggtggtct
ttttgtcttactgacggtgtcttttgccttgcagaaactttggagtttca
ctaggtcccatttgtcaattctcgatcttacagtacaagccattactgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctgctcgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcatttttttttatcacaat
tgctctgtagtaaagctttaggtcaggcatggtgattccaccagaggttc
ttttatccttgagaagactttttgctatcctaggttttttgttattccag
atgaatttgcaaattgctccttctaattcattgaagaattgagttggaat
tttgatggggattgcattgaatctgtagatctgagcagggttttctaatc
cctgtaatttttgttagttgtctcctggctagtcaattgttttttcactt
ttttctctctctcccattcatgttaggggattttctgatttcctgaaatt
tacatgaataatgctttccctaactctccttcatgtatctatcaatttca
tgaaatttttttcttttctaatactctcatgtcttaaggcttttcttctt
ccgtttttttataatgaatttcttttttattggttatttcattttattta
acatttcaagtttatccccttcccagttctccctccacaaacttctatcc
caattcccctttcccttgcttctaatgagggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101485502_101486677
seq2: B6Ng01-197H17.b_43_1197 (reverse)

seq1  TTCTTCTGAACGGGTCATAAAGAGATGATAAAGCTACAAACCCAAAGAAA  50
      |||||| |||| ||||||||||||||||| ||||||||   |||||||||
seq2  TTCTTC-GAAC-GGTCATAAAGAGATGAT-AAGCTACA---CCAAAGAAA  44

seq1  CTAATTACTCACTACTTGAAAGGATGAAGTGAA-TTTTGAGCTTTATGAA  99
      |||  |||||||||| || | | |||||||||| |||||||| ||||| |
seq2  CTA--TACTCACTACCTG-ACGAATGAAGTGAATTTTTGAGC-TTATG-A  89

seq1  TGTAAGCTAATAATAAGTATCATGG-ATAGTAATTATGCTTACAATTTTA  148
       ||||||||   ||||||||||||| ||||||  ||||| |||||||| |
seq2  CGTAAGCTA--TATAAGTATCATGGAATAGTA--TATGC-TACAATTTAA  134

seq1  ATTAGCGAATGCTGCTGTAAATTAGAAGGCTGGGTCTACATTGGAAAC-A  197
      ||||||| ||||||||||||| ||||||||| ||||||||| | |||| |
seq2  ATTAGCG-ATGCTGCTGTAAA-TAGAAGGCT-GGTCTACATGGAAAACAA  181

seq1  GAACCACAGAGCTCTTTAAACCTGCAACAAACCATAGCACGAGAATACTA  247
      ||||||||||||||||   | |||||||||||||||||||||||||||||
seq2  GAACCACAGAGCTCTT---AACTGCAACAAACCATAGCACGAGAATACTA  228

seq1  AGAGGCTGACAGACTCCTAAGATGAAAACTTCAAGTAGTTTCAGACAAAA  297
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  AGAGGCTGACAGACT-CTAAGATG-AAACTTCAAGTAGTTTCAGACAAAA  276

seq1  CTCACACAGGTCATCCTGAAAGTCAGTGCAAACCAAAGGTCATTAGCACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAGGTCATCCTGAAAGTCAGTGCAAACCAAAGGTCATTAGCACT  326

seq1  CCAGTTAGTAATGATAAGAGATACGAGGAATAATTATCTTCTGGTTAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAGTAATGATAAGAGATACGAGGAATAATTATCTTCTGGTTAAAA  376

seq1  ATATTACAGGTGAGGGAAGTGATATAGTTTCATTATAATGTCAAAAAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAGGTGAGGGAAGTGATATAGTTTCATTATAATGTCAAAAAGTA  426

seq1  AAGATTTTTTTTTTAATCACAGAAGAAAATGATGGTGCTTGTCTGTGAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTTTTTTAATCACAGAAGAAAATGATGGTGCTTGTCTGTGAAT  476

seq1  CCAGTACTAAAGAAGAGGAGCAGAAGAAGCAAGACAAGTCTGAGACCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACTAAAGAAGAGGAGCAGAAGAAGCAAGACAAGTCTGAGACCAGC  526

seq1  CTGGCTGACTCTAGAGAGTTCTAGGCCACCCTGGACTAAATAATGAAACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGACTCTAGAGAGTTCTAGGCCACCCTGGACTAAATAATGAAACC  576

seq1  CTGCCTCAAGAGTGAAAACAGGGGACTGGAGAGATGGCTCCATGGTAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAAGAGTGAAAACAGGGGACTGGAGAGATGGCTCCATGGTAAGA  626

seq1  GCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACAT  676

seq1  GGTGGCTTATGACCATCCGTAAGGGGATCTGCTGCCCTCTTCTGGTGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTATGACCATCCGTAAGGGGATCTGCTGCCCTCTTCTGGTGTGT  726

seq1  CTGAAGATAGCTACAGTGTACTCATCTACAGAAAATAAATAAATCTAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATAGCTACAGTGTACTCATCTACAGAAAATAAATAAATCTAAAA  776

seq1  CAACAACAAAAAATAGTAGTAGTAAAAAACACTAAATAAAATATGCCAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAAAAATAGTAGTAGTAAAAAACACTAAATAAAATATGCCAAT  826

seq1  TACAATATAAATATCAAACACTGTGTAGAGGAGAGTAAGCAGTGTCCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATAAATATCAAACACTGTGTAGAGGAGAGTAAGCAGTGTCCTCT  876

seq1  GAGTCCTCTGGAATTAGATCACATGTCCTACAGTTCTCTAGCTCACCCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCTGGAATTAGATCACATGTCCTACAGTTCTCTAGCTCACCCAT  926

seq1  GCTTCCCAGCTGTGATTACGTTAACTCTTTTGACCTACAACTTATGTCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCAGCTGTGATTACGTTAACTCTTTTGACCTACAACTTATGTCTA  976

seq1  GAAGCTCATTTTCCCCTCAACAGATTAACCAACTCAATGAGCTTTCTAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCATTTTCCCCTCAACAGATTAACCAACTCAATGAGCTTTCTAGC  1026

seq1  CATGTAGTCAGGAACACGATGCCCCAGATGAACACATTTTGACCAGGAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTCAGGAACACGATGCCCCAGATGAACACATTTTGACCAGGAGT  1076

seq1  GGGACTTTGGGCATCAGGGAAATCGTGAAGGAGCTAAAGAATAGTCCTGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTGGGCATCAGGGAAATCGTGAAGGAGCTAAAGAATAGTCCTGG  1126

seq1  ATTCTGCTAGCAACATTTCTTTTGAATTC  1176
      |||||||||||||||||||||||||||||
seq2  ATTCTGCTAGCAACATTTCTTTTGAATTC  1155


seq1: chr2_101343731_101344570
seq2: B6Ng01-197H17.g_348_1199

seq1  CTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGT  50

seq1  TTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGA  100

seq1  TAAGTATGGATCGATTCACATTCTTCTGCTCGATAACAACCAGTTGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATGGATCGATTCACATTCTTCTGCTCGATAACAACCAGTTGTGCC  150

seq1  AGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCT  200

seq1  CCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTC  250

seq1  TTCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATG  300

seq1  CATTTTTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATG  350

seq1  GTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGACTTTTTGCTATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGACTTTTTGCTATCCT  400

seq1  AGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGCTCCTTCTAATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGCTCCTTCTAATTCAT  450

seq1  TGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATC  500

seq1  TGAGCAGGGTTTTCTAATCCCTGTAA-TTTTGTTAGTTGTCTCCTGGCTA  549
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAGCAGGGTTTTCTAATCCCTGTAATTTTTGTTAGTTGTCTCCTGGCTA  550

seq1  GTCAATTGTTTTTTCACTTTTTTCTCTCTCTCCCATTCATGTTAGGGGA-  598
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCAATTGTTTTTTCACTTTTTTCTCTCTCTCCCATTCATGTTAGGGGAT  600

seq1  TTTCTGATTTCCTGAAATTTACATGATTAATGCTTT-CCTAACTCTCCTT  647
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TTTCTGATTTCCTGAAATTTACATGAATAATGCTTTCCCTAACTCTCCTT  650

seq1  CATGTATCTATCATTTTCATGAAA-TTTTTTCTTTCCT-ATACTCTCATG  695
      ||||||||||||| |||||||||| |||||||||| || |||||||||||
seq2  CATGTATCTATCAATTTCATGAAATTTTTTTCTTTTCTAATACTCTCATG  700

seq1  TC-TAAGGC-TTTCTTCTTCC-TTTTTTTATAATGAA-TTCTTTTTTATT  741
      || |||||| ||||||||||| ||||||||||||||| ||||||||||||
seq2  TCTTAAGGCTTTTCTTCTTCCGTTTTTTTATAATGAATTTCTTTTTTATT  750

seq1  GGTTATTTCA-TTTATTT-ACATTTCAAATGTTATCCCCTTCCCAGTTTC  789
      |||||||||| ||||||| ||||||||| | |||||||||||||||||  
seq2  GGTTATTTCATTTTATTTAACATTTCAAGT-TTATCCCCTTCCCAGTTCT  799

seq1  TCCTCCACAAACCTTCTATCCCA--TCCCCCTTCCCCTGCTTCT-ATGAG  836
       |||||||||| |||||||||||  ||||| ||||| ||||||| |||||
seq2  CCCTCCACAAA-CTTCTATCCCAATTCCCCTTTCCCTTGCTTCTAATGAG  848

seq1  GGTG  840
      ||||
seq2  GGTG  852


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