BAC Information

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BAC

Clone NameB6Ng01-197H24
Chromosome2 (Build37)
Map Location 29,840,101 - 29,990,030
singlet/doubletdoublet
Overlap geneSpna2, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13
Upstream gene1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, LOC665532
Downstream geneSlc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197H24.bB6Ng01-197H24.g
ACCGA019345GA019346
length1,034371
definitionB6Ng01-197H24.b B6Ng01-197H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,840,101 - 29,841,131)(29,989,654 - 29,990,030)
sequence
gaattcatttgatttcttttcttcatccacttttgggctgggcagaatga
acttttattgagcttctagaacttgtctgttttcctcagaccttgaacca
aggtgtgatagtaaattcctacctaattctggcaggcatccaccagtagt
gatagctcttcctttctttcctactgaagcttttctgggctctgagggcc
tctagaaggacttggtaataaatgagctctacattggtagctttggaggt
ccttaagagggacagagacagctaggtgtgatgacatctgtttccctgca
ctgggatgctgaggcaggagggctcaagactagccagggctactggtaga
ctctttcttaaaacccaaaaaggagaaaagagggggatgggatggaaacg
ccacctttccccattgcctacatgagagctgttttaaaatggtcatcatc
tactacactgtcattcaatgtgctctgaagaaaatctagccattggaacc
aggaggtggaggagaaaggagtctattgaagtagttcaaagttaaaattt
ccaggtctttggtgttaatacattttccattttttagtgagtgagtgaga
ggatagccagaagtgcacagtagcatcttgtccttgaagagagccagtgt
caccttcaagttccaagccattgcaaaggcttgctaggcaggagtggtca
agccaagcctcagtactcagatgctcaatctgacctgcatgtattctttc
tggctaaaagtaaacaaactctgtaatgtacgtggggggtggggagctct
tattaacaagttgtctcctgtccactctaggaataaactctggaccctaa
gagccgtacttagctgcctcgtagacacttgaaatgctagtgtttttttg
agaattgaaaattagatgggagtgcattgatgaagttagacccagtgtgt
ctgttttgttggaaatttaattttactttaattttgtgtataaatatttt
gccctgcatgtatgtgtgtggtgccctgtgtatt
acacaaccaagcttcctgcaaccaggagtaattggatccacagacaacag
acttgtacaatctccccatggctcccgaagctcttggctgggtaaagggg
agggggcacagacttctcgggcctgccctcaggcaaagacaaaagactaa
aaattagtcctggagtgaccagaatttagcgggcgttgcaagatgtgcct
ggggtgggggtaggaggtggatttaagaggccagattggagaacctggat
cccctggtgtttctcatgagcatggagcacagggacaggggcatttgggg
gcgggggaaggtgcgaatcctagagcgaggaagcggggagggtaataggg
ggctggacaagggagacacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29840101_29841131
seq2: B6Ng01-197H24.b_45_1078

seq1  GAATTCATTTGATTTCTTTTCTTCATCCACTTTTGGGCTGGGCAGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGATTTCTTTTCTTCATCCACTTTTGGGCTGGGCAGAATGA  50

seq1  ACTTTTATTGAGCTTCTAGAACTTGTCTGTTTTCCTCAGACCTTGAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTGAGCTTCTAGAACTTGTCTGTTTTCCTCAGACCTTGAACCA  100

seq1  AGGTGTGATAGTAAATTCCTACCTAATTCTGGCAGGCATCCACCAGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGATAGTAAATTCCTACCTAATTCTGGCAGGCATCCACCAGTAGT  150

seq1  GATAGCTCTTCCTTTCTTTCCTACTGAAGCTTTTCTGGGCTCTGAGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTCTTCCTTTCTTTCCTACTGAAGCTTTTCTGGGCTCTGAGGGCC  200

seq1  TCTAGAAGGACTTGGTAATAAATGAGCTCTACATTGGTAGCTTTGGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGGACTTGGTAATAAATGAGCTCTACATTGGTAGCTTTGGAGGT  250

seq1  CCTTAAGAGGGACAGAGACAGCTAGGTGTGATGACATCTGTTTCCCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGAGGGACAGAGACAGCTAGGTGTGATGACATCTGTTTCCCTGCA  300

seq1  CTGGGATGCTGAGGCAGGAGGGCTCAAGACTAGCCAGGGCTACTGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGCTGAGGCAGGAGGGCTCAAGACTAGCCAGGGCTACTGGTAGA  350

seq1  CTCTTTCTTAAAACCCAAAAAGGAGAAAAGAGGGGGATGGGATGGAAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTAAAACCCAAAAAGGAGAAAAGAGGGGGATGGGATGGAAACG  400

seq1  CCACCTTTCCCCATTGCCTACATGAGAGCTGTTTTAAAATGGTCATCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCCCCATTGCCTACATGAGAGCTGTTTTAAAATGGTCATCATC  450

seq1  TACTACACTGTCATTCAATGTGCTCTGAAGAAAATCTAGCCATTGGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACACTGTCATTCAATGTGCTCTGAAGAAAATCTAGCCATTGGAACC  500

seq1  AGGAGGTGGAGGAGAAAGGAGTCTATTGAAGTAGTTCAAAGTTAAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGGAGGAGAAAGGAGTCTATTGAAGTAGTTCAAAGTTAAAATTT  550

seq1  CCAGGTCTTTGGTGTTAATACATTTTCCATTTTTTAGTGAGTGAGTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTTTGGTGTTAATACATTTTCCATTTTTTAGTGAGTGAGTGAGA  600

seq1  GGATAGCCAGAAGTGCACAGTAGCATCTTGTCCTTGAAGAGAGCCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCAGAAGTGCACAGTAGCATCTTGTCCTTGAAGAGAGCCAGTGT  650

seq1  CACCTTCAAGTTCCAAGCCATTGCAAAGGCTTGCTAGGCAGGAGTGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCAAGTTCCAAGCCATTGCAAAGGCTTGCTAGGCAGGAGTGGTCA  700

seq1  AGCCAAGCCTCAGTACTCAGATGCTCAATCTGACCTGCATGTATTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCCTCAGTACTCAGATGCTCAATCTGACCTGCATGTATTCTTTC  750

seq1  TGGCTAAAAGTAAACAAACTCTGTAATGTACGT-GGGGGTGGGGAGCTCT  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGCTAAAAGTAAACAAACTCTGTAATGTACGTGGGGGGTGGGGAGCTCT  800

seq1  TATTAACAAGTTGTCTCCTGTCCACTCTAGGAATAAACTCTGGACCCTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAAGTTGTCTCCTGTCCACTCTAGGAATAAACTCTGGACCCTAA  850

seq1  GAGCCGTACTTAGCTGCCTCGTAGACACTTGAAATGCTAGTGTTTTTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGTACTTAGCTGCCTCGTAGACACTTGAAATGCTAGTGTTTTTTTG  900

seq1  AGAATTTGAAA-TAGATGGGAGTGCATTGATGAAGTTAGACCCAGTGTGT  948
      ||||||  ||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGAAAATTAGATGGGAGTGCATTGATGAAGTTAGACCCAGTGTGT  950

seq1  CTGTTTTTGTTGAAATTTTTATTTTTACTTT-ATTTTGTGTATAAATATT  997
      |||||||  | ||||  |||| ||||||||| ||||||||||||||||||
seq2  CTGTTTTGTTGGAAA--TTTAATTTTACTTTAATTTTGTGTATAAATATT  998

seq1  TTG-CCTGCATGTATGTGTGT-GTGCCCTGTGTATT  1031
      ||| ||||||||||||||||| ||||||||||||||
seq2  TTGCCCTGCATGTATGTGTGTGGTGCCCTGTGTATT  1034

seq1: chr2_29989654_29990030
seq2: B6Ng01-197H24.g_66_442 (reverse)

seq1  TAGTGTCTCCCTTGTCCAGCCCCCTATTACCCTCCCCGCTTCCTCGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTCCCTTGTCCAGCCCCCTATTACCCTCCCCGCTTCCTCGCTCT  50

seq1  AGGATTCGCACCTTCCCCCGCCCCCAAATGCCCCTGTCCCTGTGCTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCGCACCTTCCCCCGCCCCCAAATGCCCCTGTCCCTGTGCTCCAT  100

seq1  GCTCATGAGAAACACCAGGGGATCCAGGTTCTCCAATCTGGCCTCTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGAGAAACACCAGGGGATCCAGGTTCTCCAATCTGGCCTCTTAAA  150

seq1  TCCACCTCCTACCCCCACCCCAGGCACATCTTGCAACGCCCGCTAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCCTACCCCCACCCCAGGCACATCTTGCAACGCCCGCTAAATTC  200

seq1  TGGTCACTCCAGGACTAATTTTTAGTCTTTTGTCTTTGCCTGAGGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTCCAGGACTAATTTTTAGTCTTTTGTCTTTGCCTGAGGGCAGG  250

seq1  CCCGAGAAGTCTGTGCCCCCTCCCCTTTACCCAGCCAAGAGCTTCGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGAAGTCTGTGCCCCCTCCCCTTTACCCAGCCAAGAGCTTCGGGAG  300

seq1  CCATGGGGAGATTGTACAAGTCTGTTGTCTGTGGATCCAATTACTCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGGAGATTGTACAAGTCTGTTGTCTGTGGATCCAATTACTCCTGG  350

seq1  TTGCAGGAAGCTTGGTTGTGTGAATTC  377
      |||||||||||||||||||||||||||
seq2  TTGCAGGAAGCTTGGTTGTGTGAATTC  377