BAC Information

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BAC

Clone NameB6Ng01-197N01
Chromosome2 (Build37)
Map Location 153,212,843 - 153,356,519
singlet/doubletdoublet
Overlap geneAsxl1, 8430427H17Rik
Upstream geneSox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik
Downstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197N01.bB6Ng01-197N01.g
ACCGA019584GA019585
length1,110436
definitionB6Ng01-197N01.b B6Ng01-197N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,212,843 - 153,213,958)(153,356,079 - 153,356,519)
sequence
gaattcacaaaatttctctcttaaatttaaactgttacaagagtttgctc
actttaaaattaacagtatttcctttgttctttgacagatcaatgttgaa
ataagtttcaaatttaaaagaactatttttatatcaaatgtaagagaaat
gatcacatctcagagctcaagatatgagtcagtgggtaagatcactgact
ggacttgcagaggacctatgtttagttcccagcacccacatggcagttca
caactgataattccattcccagggaatcgggtatcttctgaccaccgtcg
gtactaagcactcttgcaaagcacaggcatgcatgcaaagaaaacactca
tgtacattaaaatgaacattctttagaaacaataaaattttggggctggc
aagagggctcagtggtttaaaacacttgtttcatttagaggagctgagtt
tgagttccagtaccagaggatcctatgccctcttctgaactctgggtata
caaacatacatacaggtaaaacacttgtgtacataaagtaaatctaaaat
aatgttaaaaattaagttgtaagccgagtgtggtggcgcacgcctttaat
cccagcacttgggaggcagaggcaggcggatttctgagttcgaggccagc
ctggtctacaaagtgagttccaggacagccagagctatacagagaaaccc
tgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaattaagttg
taagtgcacatagtttgctttaataattttaattcttaataattgattta
ttaaaattagacattttagatgaaagtttaatgggaccaaggttcatcat
acagttttcccctttagtgaccaattcagtggcttcttagtatattcata
aagttgtacaattggttaccatgatacaattctagaacatttccatttac
tccaaaagaaaacaaaccctttttagtaatagcattcattgtcctttcct
ttagaccctagccacctactcattaatcattgtgcaatatttaaagaacc
atctcctgctgagcaactttttaaatgtttcatctataattaatggtcat
tcccatctcc
agatgaggtggaaggagagaaagtttgggggtccaaagggtggtggcttg
gggtcccccccccgggggaacattcctattctggcacccatactgacacc
agagcggtcaggccaattgcaggagtgaggagaggagcctgtcccacacc
gccagggttgggctacctcggctaagacgacccaatcggggaggctgggg
acgccagtgtctgggctatgatctgtgccctactgcctgcgggacagtca
gcccgtcccgacagagtgcggccttccaggctgtgggccgaaccagccgg
atggaacacgatccctagctgggtaccgcgcgcctgccgctgctgccctc
ccggccgctgcgggtgcagcagcccccgcgcccccaggggccgggccggg
cggggctgggcgcgcgggttgcgggagggagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153212843_153213958
seq2: B6Ng01-197N01.b_43_1152

seq1  GAATTCACAAAATTTCTCTCTTAAATTTAAACTGTTACAAGAGTTTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAATTTCTCTCTTAAATTTAAACTGTTACAAGAGTTTGCTC  50

seq1  ACTTTAAAATTAACAGTATTTCCTTTGTTCTTTGACAGATCAATGTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAATTAACAGTATTTCCTTTGTTCTTTGACAGATCAATGTTGAA  100

seq1  ATAAGTTTCAAATTTAAAAGAACTATTTTTATATCAAATGTAAGAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTCAAATTTAAAAGAACTATTTTTATATCAAATGTAAGAGAAAT  150

seq1  GATCACATCTCAGAGCTCAAGATATGAGTCAGTGGGTAAGATCACTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATCTCAGAGCTCAAGATATGAGTCAGTGGGTAAGATCACTGACT  200

seq1  GGACTTGCAGAGGACCTATGTTTAGTTCCCAGCACCCACATGGCAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCAGAGGACCTATGTTTAGTTCCCAGCACCCACATGGCAGTTCA  250

seq1  CAACTGATAATTCCATTCCCAGGGAATCGGGTATCTTCTGACCACCGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGATAATTCCATTCCCAGGGAATCGGGTATCTTCTGACCACCGTCG  300

seq1  GTACTAAGCACTCTTGCAAAGCACAGGCATGCATGCAAAGAAAACACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAGCACTCTTGCAAAGCACAGGCATGCATGCAAAGAAAACACTCA  350

seq1  TGTACATTAAAATGAACATTCTTTAGAAACAATAAAATTTTGGGGCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTAAAATGAACATTCTTTAGAAACAATAAAATTTTGGGGCTGGC  400

seq1  AAGAGGGCTCAGTGGTTTAAAACACTTGTTTCATTTAGAGGAGCTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCTCAGTGGTTTAAAACACTTGTTTCATTTAGAGGAGCTGAGTT  450

seq1  TGAGTTCCAGTACCAGAGGATCCTATGCCCTCTTCTGAACTCTGGGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGTACCAGAGGATCCTATGCCCTCTTCTGAACTCTGGGTATA  500

seq1  CAAACATACATACAGGTAAAACACTTGTGTACATAAAGTAAATCTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACATACAGGTAAAACACTTGTGTACATAAAGTAAATCTAAAAT  550

seq1  AATGTTAAAAATTAAGTTGTAAGCCGAGTGTGGTGGCGCACGCCTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAAAATTAAGTTGTAAGCCGAGTGTGGTGGCGCACGCCTTTAAT  600

seq1  CCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGC  650

seq1  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCC  700

seq1  TGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAGTTG  750

seq1  TAAGTGCACATAGTTTGCTTTAATAATTTTAATTCTTAATAATTGATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCACATAGTTTGCTTTAATAATTTTAATTCTTAATAATTGATTTA  800

seq1  TTAAAATTAGACATTTTAGATGAAAGTTTAATGGGACCAAGGTTCATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTAGACATTTTAGATGAAAGTTTAATGGGACCAAGGTTCATCAT  850

seq1  ACAGTTTTCCCCTTTAGTGACCAATTCAGTGGCTTCTTAGTATATTCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTCCCCTTTAGTGACCAATTCAGTGGCTTCTTAGTATATTCATA  900

seq1  AAGTTGTACAA-TGGTTACCATGATACAATTCTAGAACATTTC--ATTAC  947
      ||||||||||| |||||||||||||||||||||||||||||||   ||||
seq2  AAGTTGTACAATTGGTTACCATGATACAATTCTAGAACATTTCCATTTAC  950

seq1  TCCCAAAAGAAACAAACC--TTTTAGTAATAGCATTCATTGTCCCTTCCT  995
      ||| |||  |||||||||  |||||||||||||||||||||||| |||| 
seq2  TCCAAAAGAAAACAAACCCTTTTTAGTAATAGCATTCATTGTCCTTTCC-  999

seq1  TTTAGACCCTAG-CAACTACTTCATTTAATCATTGGTGCAATATTTAAAA  1044
      |||||||||||| || |||| ||| ||||||||| ||||||||||| |||
seq2  TTTAGACCCTAGCCACCTAC-TCA-TTAATCATT-GTGCAATATTT-AAA  1045

seq1  GAAACATCTCCCTGCTGAGCAACTTTTTAAAAATGTTTTCATATTATAAT  1094
      ||| ||||| ||||||||||||||||||  ||||| ||||||  ||||||
seq2  GAACCATCT-CCTGCTGAGCAACTTTTT--AAATG-TTTCAT-CTATAAT  1090

seq1  TA--TGTCATTTCCCCCATTCTCC  1116
      ||   ||||||   |||| |||||
seq2  TAATGGTCATT---CCCA-TCTCC  1110

seq1: chr2_153356079_153356519
seq2: B6Ng01-197N01.g_70_511 (reverse)

seq1  CCCCCCTCCCTCCCGC-GCCCGCGCGCCCAGCCCCGCCCGGCCCGGCCCC  49
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  CCCCCCTCCCTCCCGCAACCCGCGCGCCCAGCCCCGCCCGGCCCGGCCCC  50

seq1  TGGGGGCGCGGGGGCTGCTGCACCCGCAGCGGCCGGGAGGGCAGCAGCGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCGCGGGGGCTGCTGCACCCGCAGCGGCCGGGAGGGCAGCAGCGG  100

seq1  CAGGCGCGCGGTACCCAGCTAGGGATCGTGTTCCATCCGGCTGGTTCGGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGCGCGGTACCCAGCTAGGGATCGTGTTCCATCCGGCTGGTTCGGC  150

seq1  CCACAGCCTGGAAGGCCGCACTCTGTCGGGACGGGCTGACTGTCCCGCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCTGGAAGGCCGCACTCTGTCGGGACGGGCTGACTGTCCCGCAG  200

seq1  GCAGTAGGGCACAGATCATAGCCCAGACACTGGCGTCCCCAGCCTCCCCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGGGCACAGATCATAGCCCAGACACTGGCGTCCCCAGCCTCCCCG  250

seq1  ATTGGGTCGTCTTAGCCGAGGTAGCCCAACCCTGGCGGTGTGGGACAGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTCGTCTTAGCCGAGGTAGCCCAACCCTGGCGGTGTGGGACAGGC  300

seq1  TCCTCTCCTCACTCCTGCAATTGGCCTGACCGCTCTGGTGTCAGTATGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTCACTCCTGCAATTGGCCTGACCGCTCTGGTGTCAGTATGGG  350

seq1  TGCCAGAATAGGAATGTTCCCCCGGGGGGGGGACCCCAAGCCACCACCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAATAGGAATGTTCCCCCGGGGGGGGGACCCCAAGCCACCACCCT  400

seq1  TTGGACCCCCAAACTTTCTCTCCTTCCACCTCATCTGAATTC  441
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCCCCAAACTTTCTCTCCTTCCACCTCATCTGAATTC  442