BAC Information

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BAC

Clone NameB6Ng01-197P23
Chromosome2 (Build37)
Map Location 152,239,649 - 152,240,687
singlet/doubletsinglet
Overlap geneZcchc3
Upstream geneLOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12
Downstream gene6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197P23.bB6Ng01-197P23.g
ACCGA019712GA019713
length1,0931,043
definitionB6Ng01-197P23.b B6Ng01-197P23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggtagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcctagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgcaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttactaatgcgtttgcgat
tgtacgaggaatagttatatcatgttaggcgtatttacaaccttgttatt
gttttcatgtgacatgagatattatttgtgtcaagtgacaaggggtggat
tgtagtggctattcctggttgttcaacttgaaatatttggaatgaactac
atccggaattggaaggctcacagtgactcttatctggagccttggagatc
cttatctcggatcttggtttgaaagaatcttgagccataatgg
gaattcccgcacgcaagacttccaagagggcggaagccagaagcgtcggg
tttcagagcgggggcggggagtcgcccacgcagcccgcggccctcatccc
tcatcccgagcgggagcgcgccatgggcacctcggaccgcgggaacgagt
ggaggatgctgggaaagaggtaacatggccaccggcggcggagcggagga
ggagtcacagcggggccggcctcagctcccgctccccgcgcgacccgtgg
cccgcgtcgaggaacccgagggcgtccgcgagaagatgggctgggcccag
gtggtcaagaacctggcggagaagaagggcgacttccgcgagccgcggcg
gcgcgacgaaactggcagcggtgcaagtggcgggctcggcagccccgggg
gcctggccaccccgaaccccggcgacttcccacccgccgctcgcggggac
ccaaagggccgccgcagagaccctacgggtgaggcgtcagacgcttacag
gaaaaagagcgcgagcggcgcgggagacccgagtcgaaggaagaaggccg
aggtgacggcggccatggcgacccccgccaggcccggcacgaccgaagat
gccaccgagcgaccgctccaggacgagccaccggctgccggcccgggtaa
gggccgcttcctcgtgcgcatctgtttccagggagacgaaagtgcctgtc
cgacccgggacttcgtggtgggcgcgctcatcctgcgctccatcggcatg
gaccctgacgacatctacgcggtcattcagatccccggcagccgcgagtt
cgacgtgagtttccgatccgccgaaaagctagccctgttttctccgcgtc
tacgaggagaagcgagagctggaggactgctgggagaactttgtgggttt
ttggggcggaagccaggttcagccctgaagacctctttcatcctcttcgg
gaacgagacgtggacgtggaggacatcgtgacttggctcaagcgcactgc
cgacgtgctggacgtgcccgtgaagtgaacgacaggttcggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152239649_152240687
seq2: B6Ng01-197P23.g_65_1107 (reverse)

seq1  TCCCGAACCTGTCGGTCACTTTCACGGGCACGGCCAGCACGTC-GCAGTG  49
      |||||||||||||| |||| |||||||||||| |||||||||| ||||| 
seq2  TCCCGAACCTGTCGTTCAC-TTCACGGGCACGTCCAGCACGTCGGCAGT-  48

seq1  GCGCTTGAGCCAGGTCACGATGTCCTCCACGTCCACGGTCTCGTTCCGGA  99
      |||||||||||| ||||||||||||||||||||||| |||||||||| ||
seq2  GCGCTTGAGCCAAGTCACGATGTCCTCCACGTCCAC-GTCTCGTTCCCGA  97

seq1  AGAGGATGAAGAGGGTCTTCA-GGCTGGACCTG--CTCCGCCCCAAAA--  144
      ||||||||||   |||||||| ||||| |||||   ||||||||||||  
seq2  AGAGGATGAAAGAGGTCTTCAGGGCTGAACCTGGCTTCCGCCCCAAAAAC  147

seq1  CCACAAAGTTCTCCCAGCAGTCCTCCAGCTCTCGCTTCTCCTCGTAGACG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGTTCTCCCAGCAGTCCTCCAGCTCTCGCTTCTCCTCGTAGACG  197

seq1  CGGAG-AAACAGGGCTAGCTTTTCGGCGGATCGGAAACTCACGTCGAACT  243
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAAAACAGGGCTAGCTTTTCGGCGGATCGGAAACTCACGTCGAACT  247

seq1  CGCGGCTGCCGGGGATCTGAATGACCGCGTAGATGTCGTCAGGGTCCATG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCTGCCGGGGATCTGAATGACCGCGTAGATGTCGTCAGGGTCCATG  297

seq1  CCGATGGAGCGCAGGATGAGCGCGCCCACCACGAAGTCCCGGGTCGGACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGGAGCGCAGGATGAGCGCGCCCACCACGAAGTCCCGGGTCGGACA  347

seq1  GGCACTTTCGTCTCCCTGGAAACAGATGCGCACGAGGAAGCGGCCCTTAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTCGTCTCCCTGGAAACAGATGCGCACGAGGAAGCGGCCCTTAC  397

seq1  CCGGGCCGGCAGCCGGTGGCTCGTCCTGGAGCGGTCGCTCGGTGGCATCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCCGGCAGCCGGTGGCTCGTCCTGGAGCGGTCGCTCGGTGGCATCT  447

seq1  TCGGTCGTGCCGGGCCTGGCGGGGGTCGCCATGGCCGCCGTCACCTCGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCGTGCCGGGCCTGGCGGGGGTCGCCATGGCCGCCGTCACCTCGGC  497

seq1  CTTCTTCCTTCGACTCGGGTCTCCCGCGCCGCTCGCGCTCTTTTTCCTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCTTCGACTCGGGTCTCCCGCGCCGCTCGCGCTCTTTTTCCTGT  547

seq1  AAGCGTCTGACGCCTCACCCGTAGGGTCTCTGCGGCGGCCCTTTGGGTCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTCTGACGCCTCACCCGTAGGGTCTCTGCGGCGGCCCTTTGGGTCC  597

seq1  CCGCGAGCGGCGGGTGGGAAGTCGCCGGGGTTCGGGGTGGCCAGGCCCCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGAGCGGCGGGTGGGAAGTCGCCGGGGTTCGGGGTGGCCAGGCCCCC  647

seq1  GGGGCTGCCGAGCCCGCCACTTGCACCGCTGCCAGTTTCGTCGCGCCGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCCGAGCCCGCCACTTGCACCGCTGCCAGTTTCGTCGCGCCGCC  697

seq1  GCGGCTCGCGGAAGTCGCCCTTCTTCTCCGCCAGGTTCTTGACCACCTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTCGCGGAAGTCGCCCTTCTTCTCCGCCAGGTTCTTGACCACCTGG  747

seq1  GCCCAGCCCATCTTCTCGCGGACGCCCTCGGGTTCCTCGACGCGGGCCAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCCATCTTCTCGCGGACGCCCTCGGGTTCCTCGACGCGGGCCAC  797

seq1  GGGTCGCGCGGGGAGCGGGAGCTGAGGCCGGCCCCGCTGTGACTCCTCCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGCGCGGGGAGCGGGAGCTGAGGCCGGCCCCGCTGTGACTCCTCCT  847

seq1  CCGCTCCGCCGCCGGTGGCCATGTTACCTCTTTCCCAGCATCCTCCACTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCGCCGCCGGTGGCCATGTTACCTCTTTCCCAGCATCCTCCACTC  897

seq1  GTTCCCGCGGTCCGAGGTGCCCATGGCGCGCTCCCGCTCGGGATGAGGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCGCGGTCCGAGGTGCCCATGGCGCGCTCCCGCTCGGGATGAGGGA  947

seq1  TGAGGGCCGCGGGCTGCGTGGGCGACTCCCCGCCCCCGCTCTGAAACCCG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCGCGGGCTGCGTGGGCGACTCCCCGCCCCCGCTCTGAAACCCG  997

seq1  ACGCTTCTGGCTTCCGCCCTCTTGGAAGTCTTGCGTGCGGGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTCTGGCTTCCGCCCTCTTGGAAGTCTTGCGTGCGGGAATTC  1043