BAC Information

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BAC

Clone NameB6Ng01-198C18
Chromosome2 (Build37)
Map Location 155,424,234 - 155,584,806
singlet/doubletdoublet
Overlap geneMyh7b, Trpc4ap, Edem2, Procr
Upstream genePxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss
Downstream geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198C18.bB6Ng01-198C18.g
ACCGA019836GA019837
length1,156808
definitionB6Ng01-198C18.b B6Ng01-198C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,424,234 - 155,425,387)(155,584,010 - 155,584,806)
sequence
gaattcactatgtagactgggttggcctaaaaactcacagagatccacct
gcctttgcctcccaggttctgggatgaaaggcacatggcaccactgcctc
accctttttcagtttttgcttttctggatgttgctgtcttgcacatacac
atctgtatgagcggttcatcttatagtccagtagagaagacgctgaggag
acaaactgctaacatcttaacatcttaactgtctgtttaaccatttaagg
aagtgccaattgttttcccaaacagcagcaatgtatgagctctggtcttc
tctagtttctgtttgtctggttatagtaatcttaggtccgtgaaacagca
tctttgttgtggtcatttctttgagtcgtgtagctcaggctggccttcag
ctccatgaactcttgatcctcctgcctccacctcccaggccctgaaatgg
actaaaaaatggcacagaagagattctcggtggattaagagcacttgcta
ctcttccagaagatatgagttgggttctctgggcccatatggtcagctca
cagccacctgcagctctggtaccctcttctggcctctgtgcccacatgca
aaagatctgaatagacatgttaccaggagacacaacgatcagtgagcatt
gtccattattaataactaggagacactaatcaaaatcaaagggtgaagaa
agtggtgagtttctgagttcgcctgtttctctagagtgagatattgctca
aaaagacacttgcaccaggtacagcagctcacacctgggaagctgaggca
ggagcattcccgtgaattctgggctacaaaatgagaccttggctaaacac
acaaagaacatcccaggaagatggctctgggtgaagatggcgcttgttat
gcattcgctctctatgcaagggtgagggtgtgagttcgaatccccagaac
ccacataaagcccgggagtagtagcatcacaatcccagtgctcctgagtc
aagcctagtagccagagacaggagatttacatgaagttcaaggccagcta
gccttgagtatccagttgcaatcaaggagaccctgcatcaaacaggtgat
ggtggaggcttattactggagtacaagtcttgacacactgttgacacatt
ccactg
gaattccttgccaatactcattgtagaacttagtttctacctgtgtgata
ttaaaagattaaaagccccttttagtggggcttttagtgggaggtgacct
ggctctgacattgatgggaagggatccatgctgctctcatggtatgagtt
aggctgttctgaggtgtgttagttcctgtaagagaaacagttatggaaga
gtgagtttttctccatctcttgctttctttctctgggagatctctctggc
tcacactcctgccatgcgatgtcatttatcatgtcatgacacaatcagaa
aaccttcctcatgtgagaatgcacacatggaggaggctgctggatttggg
actttcagcctctaaaactgtgagctttactaaacctcttttccttgtaa
attactcagcctcagagattttgttacagcaacagaaaatgaattaagat
accctcaaaaataatgtttttttaaaaaagatgtgtttattttatgtata
tgagtacactgtagctgtcttcagacacacaagaagagggaatcagatcc
cattacagatgattgtgagccaccaagtagttgctgggaattgaactcag
gacctctggaagagcaatcagtgctcttaactgctgagccatctctccag
actccagttattcttctttttaatgatttttaaaaaggacttctagccgg
gcatggtggcgcacaccttttatcccaatcactcgagaggcagaggcaga
ggcagaaggcagaggcagaggcagtatgcaaaggcagaggctgaaggtag
aaggcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155424234_155425387
seq2: B6Ng01-198C18.b_44_1199

seq1  GAATTCACTATGTAGACTGGGTTGGCCTAAAAACTCACAGAGATCCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACTGGGTTGGCCTAAAAACTCACAGAGATCCACCT  50

seq1  GCCTTTGCCTCCCAGGTTCTGGGATGAAAGGCACATGGCACCACTGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCCTCCCAGGTTCTGGGATGAAAGGCACATGGCACCACTGCCTC  100

seq1  ACCCTTTTTCAGTTTTTGCTTTTCTGGATGTTGCTGTCTTGCACATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTTCAGTTTTTGCTTTTCTGGATGTTGCTGTCTTGCACATACAC  150

seq1  ATCTGTATGAGCGGTTCATCTTATAGTCCAGTAGAGAAGACGCTGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATGAGCGGTTCATCTTATAGTCCAGTAGAGAAGACGCTGAGGAG  200

seq1  ACAAACTGCTAACATCTTAACATCTTAACTGTCTGTTTAACCATTTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGCTAACATCTTAACATCTTAACTGTCTGTTTAACCATTTAAGG  250

seq1  AAGTGCCAATTGTTTTCCCAAACAGCAGCAATGTATGAGCTCTGGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAATTGTTTTCCCAAACAGCAGCAATGTATGAGCTCTGGTCTTC  300

seq1  TCTAGTTTCTGTTTGTCTGGTTATAGTAATCTTAGGTCCGTGAAACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTCTGTTTGTCTGGTTATAGTAATCTTAGGTCCGTGAAACAGCA  350

seq1  TCTTTGTTGTGGTCATTTCTTTGAGTCGTGTAGCTCAGGCTGGCCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGTGGTCATTTCTTTGAGTCGTGTAGCTCAGGCTGGCCTTCAG  400

seq1  CTCCATGAACTCTTGATCCTCCTGCCTCCACCTCCCAGGCCCTGAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAACTCTTGATCCTCCTGCCTCCACCTCCCAGGCCCTGAAATGG  450

seq1  ACTAAAAAATGGCACAGAAGAGATTCTCGGTGGATTAAGAGCACTTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAATGGCACAGAAGAGATTCTCGGTGGATTAAGAGCACTTGCTA  500

seq1  CTCTTCCAGAAGATATGAGTTGGGTTCTCTGGGCCCATATGGTCAGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAAGATATGAGTTGGGTTCTCTGGGCCCATATGGTCAGCTCA  550

seq1  CAGCCACCTGCAGCTCTGGTACCCTCTTCTGGCCTCTGTGCCCACATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCTGCAGCTCTGGTACCCTCTTCTGGCCTCTGTGCCCACATGCA  600

seq1  AAAGATCTGAATAGACATGTTACCAGGAGACACAACGATCAGTGAGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTGAATAGACATGTTACCAGGAGACACAACGATCAGTGAGCATT  650

seq1  GTCCATTATTAATAACTAGGAGACACTAATCAAAATCAAAGGGTGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTATTAATAACTAGGAGACACTAATCAAAATCAAAGGGTGAAGAA  700

seq1  AGTGGTGAGTTTCTGAGTTCGCCTGTTTCTCTAGAGTGAGATATTGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAGTTTCTGAGTTCGCCTGTTTCTCTAGAGTGAGATATTGCTCA  750

seq1  AAAAGACACTTGCACCAGGTACAGCAGCTCACACCTGGGAAGCTGAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACTTGCACCAGGTACAGCAGCTCACACCTGGGAAGCTGAGGCA  800

seq1  GGAGCATTCCCGTGAATTCTGGGCTACAAAATGAGACCTTGGCTAAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTCCCGTGAATTCTGGGCTACAAAATGAGACCTTGGCTAAACAC  850

seq1  ACAAAGAACATCCCAGGAAGATGGCTCTGGGTGAAGATGGCGCTTGTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACATCCCAGGAAGATGGCTCTGGGTGAAGATGGCGCTTGTTAT  900

seq1  GCATTCGCTCTCTATGCAAGGGTGAGGGTGTGAGTTCGAATCCCCAGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGCTCTCTATGCAAGGGTGAGGGTGTGAGTTCGAATCCCCAGAAC  950

seq1  CCACATAAAG-CCGGGAGTAGTAGCATCACAATCCCAGTGCTCCTGAGTC  999
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCACATAAAGCCCGGGAGTAGTAGCATCACAATCCCAGTGCTCCTGAGTC  1000

seq1  AAG-CTAGTAGGCAGAGACAGGAGAATTACATGAAGTTCAAGGGCCAGCT  1048
      ||| ||||||| ||||||||||||| ||||||||||||||| ||||||||
seq2  AAGCCTAGTAGCCAGAGACAGGAGATTTACATGAAGTTCAA-GGCCAGCT  1049

seq1  AGCTTGGAGTATCCAGTGGCAAAC-AGGAGACCCTGCATCAAACAAGGTG  1097
      ||| | ||||||||||| |||| | ||||||||||||||||||| |||| 
seq2  AGCCTTGAGTATCCAGTTGCAATCAAGGAGACCCTGCATCAAAC-AGGT-  1097

seq1  GAAGGT-GAGGGCTAATACTGGAGTTACAGTC-TGACACACTG-TGACAC  1144
      || ||| ||||  || |||||||||   |||| |||||||||| ||||||
seq2  GATGGTGGAGGCTTATTACTGGAGTACAAGTCTTGACACACTGTTGACAC  1147

seq1  ATTCCCACTG  1154
      ||| ||||||
seq2  ATT-CCACTG  1156

seq1: chr2_155584010_155584806
seq2: B6Ng01-198C18.g_67_874 (reverse)

seq1  TCTGCC--------TCTGCCTCTGCCTCTGCCT-CTGCCTCTGCCTCTGC  41
      ||||||        || |||||||||| ||| | ||||||||||||||||
seq2  TCTGCCTTCTACCTTCAGCCTCTGCCTTTGCATACTGCCTCTGCCTCTGC  50

seq1  C-TCTGCCTCTGCCTCTGCCTCTCGAGTG-CTGGGATTAAAGGTGTGCGC  89
      | |||||||||||||||||||||||||||  |||||| ||||||||||||
seq2  CTTCTGCCTCTGCCTCTGCCTCTCGAGTGATTGGGATAAAAGGTGTGCGC  100

seq1  CACCATGCCCGGCTAGAAGTCCTTTTTAAAAATCATTAAAAAGAAGAATA  139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCCCGGCTAGAAGTCCTTTTTAAAAATCATTAAAAAGAAGAATA  150

seq1  ACTGGAGTCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGATTGCTCTTC  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGATTGCTCTTC  200

seq1  CAGAGGTCCTGAGTTCAATTCCCAGCAACTACTTGGTGGCTCACAATCAT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCCTGAGTTCAATTCCCAGCAACTACTTGGTGGCTCACAATCAT  250

seq1  CTGTAATGGGATCTGATTCCCTCTTCTTGTGTGTCTGAAGACAGCTACAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGGGATCTGATTCCCTCTTCTTGTGTGTCTGAAGACAGCTACAG  300

seq1  TGTACTCATATACATAAAATAAACACATCTTTTTTAAAAAAACATTATTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCATATACATAAAATAAACACATCTTTTTTAAAAAAACATTATTT  350

seq1  TTGAGGGTATCTTAATTCATTTTCTGTTGCTGTAACAAAATCTCTGAGGC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTATCTTAATTCATTTTCTGTTGCTGTAACAAAATCTCTGAGGC  400

seq1  TGAGTAATTTACAAGGAAAAGAGGTTTAGTAAAGCTCACAGTTTTAGAGG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATTTACAAGGAAAAGAGGTTTAGTAAAGCTCACAGTTTTAGAGG  450

seq1  CTGAAAGTCCCAAATCCAGCAGCCTCCTCCATGTGTGCATTCTCACATGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTCCCAAATCCAGCAGCCTCCTCCATGTGTGCATTCTCACATGA  500

seq1  GGAAGGTTTTCTGATTGTGTCATGACATGATAAATGACATCGCATGGCAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTTTCTGATTGTGTCATGACATGATAAATGACATCGCATGGCAG  550

seq1  GAGTGTGAGCCAGAGAGATCTCCCAGAGAAAGAAAGCAAGAGATGGAGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGAGCCAGAGAGATCTCCCAGAGAAAGAAAGCAAGAGATGGAGAA  600

seq1  AAACTCACTCTTCCATAACTGTTTCTCTTACAGGAACTAACACACCTCAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACTCTTCCATAACTGTTTCTCTTACAGGAACTAACACACCTCAG  650

seq1  AACAGCCTAACTCATACCATGAGAGCAGCATGGATCCCTTCCCATCAATG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTAACTCATACCATGAGAGCAGCATGGATCCCTTCCCATCAATG  700

seq1  TCAGAGCCAGGTCACCTCCCACTAAAAGCCCCACTAAAAGGGGCTTTTAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCAGGTCACCTCCCACTAAAAGCCCCACTAAAAGGGGCTTTTAA  750

seq1  TCTTTTAATATCACACAGGTAGAAACTAAGTTCTACAATGAGTATTGGCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAATATCACACAGGTAGAAACTAAGTTCTACAATGAGTATTGGCA  800

seq1  AGGAATTC  797
      ||||||||
seq2  AGGAATTC  808