BAC Information

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BAC

Clone NameB6Ng01-198E08
Chromosome2 (Build37)
Map Location 6,718,895 - 6,865,009
singlet/doubletdoublet
Overlap geneCugbp2
Upstream geneCdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198E08.bB6Ng01-198E08.g
ACCGA019911GA019912
length1,1471,019
definitionB6Ng01-198E08.b B6Ng01-198E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,718,895 - 6,720,064)(6,863,996 - 6,865,009)
sequence
tggaacacagctatatatgaatttcagcagtacactttttacattttctg
gtttatatataaaccgaaaagaacaacagtcctaataacatgaagttgtt
gggatagactagacaaataatacatgtaaaggtactatggagatctttta
aaagggtgcaactattttttcccaataacaacttgccaatcaaaatactc
aacaacctcttgttctcttaattcatagtattctgagaagcacttgtcca
agttttttaacctattttgcccagtagtcaaaattggtatattaataaat
taaaaattaagagatttggctgctagactcaggtcatccatgaaattaca
atatgatcttggtcaagggactttattctttttggtttagttttcctttc
tatagtgaatagaaagcttatttataatgtcttagatgatagcattatat
aaaactttagattatacttactcttctcttaaattttagaagaatattat
aatataaaatgaaaacaatttactccaaatttcgagttgtaagaaaaaaa
ggaacatagtgagatttgaatatttagaagatcattgtattatctattag
caacgataatgagactatacggtatttgtagaaaaatttcaggaaccaaa
ccttttacaaaattcaataataggagactaccccaacaggattctcttaa
tgtgctagagcttgcatttccataatgatattagcaggatcactgggttc
acttaaagtatatatactgacgaccttagtgtttgatgataaagggactt
tttttgttggtaaagagttctgttaatctctagactataattacccactt
tggtgtcaaaatttagaataaactattatttcttccgttcccctttccag
atatttgtttttaattatcaacatgatctaagatctctacaccaatggaa
aattagctatttttaaactactgcttaagcatagtatttttccaaacaaa
gcagagtgcttgtgaattcgagtgcgttatttcatattctgtcctaaacc
taccatgattttgtatgttatatacatacatctttattcaagtcactcag
gcagtgcatttagccctccaatgcttcatctctcaggaatgctctaa

gaattcaagggatggaagaaagctgtaagtattcaccgagaaactgctct
ctgtggactagcattttgtcagagaaacaagaagcctgccctgcccacgg
cccttcagctggtgcaagcaagaggaacgcacagctctgaggctggtgtg
atgtcagtatttgccacgctgtgagccagacttagttggctagtgctggt
ggccagagatggttaccaaaaaggttgctggggacagttgggtgtgacca
gaactcggggagcccttcctggttgtgtatgtgagtgatgagcagtgtcg
aggtggccttggcactagagccctaggtgttgctggctttacacacctgt
caatgatcccgaggaagggacagtgagagtctgtcagcagctgctccagg
ataggagtagagagaaagtggcagttaatgatgttgacaaatttctaact
gggctattacagtctgttaatgtggcttctcaaacaacatgtttctgtct
tccatttttccccctgctgctttgattgagaaagccatagtgacggaaag
tgcaagatttacgccattcctctagcagggcatgggtgtaggcagggaag
cccccttggggaggaatttaccttttaaaattagccctgcacaggtgctc
tggaattggcatgtggctgtgagagggtgggggtggcattcctgaaggaa
aaggttaggcagattaacaacattgctgaaaatgctgccatcctggctct
gtcattaaaacaggtggctgtcatttatagctgctcactcatgatgggaa
gataatacaggctgagagagatttatatgggccccaggaagataagatct
ctctctctgtctctccctctgtctctctctctctgtctctccctctgtct
ctctctccatctctctctctctctctctgtctctctctgtctctctctgt
ctctgtctctctctctccctgtcctctcctctctctctctctcccctcac
actacacatacatacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6718895_6720064
seq2: B6Ng01-198E08.b_60_1206

seq1  TGGAACACAGCTATATATGAATTTCAGCAGTACACTTTTTACATTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACAGCTATATATGAATTTCAGCAGTACACTTTTTACATTTTCTG  50

seq1  GTTTATATATAAACCGAAAAGAACAACAGTCCTAATAACATGAAGTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATATAAACCGAAAAGAACAACAGTCCTAATAACATGAAGTTGTT  100

seq1  GGGATAGACTAGACAAATAATACATGTAAAGGTACTATGGAGATCTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGACTAGACAAATAATACATGTAAAGGTACTATGGAGATCTTTTA  150

seq1  AAAGGGTGCAACTATTTTTTCCCAATAACAACTTGCCAATCAAAATACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTGCAACTATTTTTTCCCAATAACAACTTGCCAATCAAAATACTC  200

seq1  AACAACCTCTTGTTCTCTTAATTCATAGTATTCTGAGAAGCACTTGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTCTTGTTCTCTTAATTCATAGTATTCTGAGAAGCACTTGTCCA  250

seq1  AGTTTTTTAACCTATTTTGCCCAGTAGTCAAAATTGGTATATTAATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTAACCTATTTTGCCCAGTAGTCAAAATTGGTATATTAATAAAT  300

seq1  TAAAAATTAAGAGATTTGGCTGCTAGACTCAGGTCATCCATGAAATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTAAGAGATTTGGCTGCTAGACTCAGGTCATCCATGAAATTACA  350

seq1  ATATGATCTTGGTCAAGGGACTTTATTCTTTTTGGTTTAGTTTTCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATCTTGGTCAAGGGACTTTATTCTTTTTGGTTTAGTTTTCCTTTC  400

seq1  TATAGTGAATAGAAAGCTTATTTATAATGTCTTAGATGATAGCATTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGAATAGAAAGCTTATTTATAATGTCTTAGATGATAGCATTATAT  450

seq1  AAAACTTTAGATTATACTTACTCTTCTCTTAAATTTTAGAAGAATATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTAGATTATACTTACTCTTCTCTTAAATTTTAGAAGAATATTAT  500

seq1  AATATAAAATGAAAACAATTTACTCCAAATTTCGAGTTGTAAGAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAATGAAAACAATTTACTCCAAATTTCGAGTTGTAAGAAAAAAA  550

seq1  GGAACATAGTGAGATTTGAATATTTAGAAGATCATTGTATTATCTATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATAGTGAGATTTGAATATTTAGAAGATCATTGTATTATCTATTAG  600

seq1  CAACGATAATGAGACTATACGGTATTTGTAGAAAAATTTCAGGAACCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGATAATGAGACTATACGGTATTTGTAGAAAAATTTCAGGAACCAAA  650

seq1  CCTTTTACAAAATTCAATAATAGGAGACTACCCCAACAGGATTCTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTACAAAATTCAATAATAGGAGACTACCCCAACAGGATTCTCTTAA  700

seq1  TGTGCTAGAGCTTGCATTTCCATAATGATATTAGCAGGATCACTGGGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAGAGCTTGCATTTCCATAATGATATTAGCAGGATCACTGGGTTC  750

seq1  ACTTAAAGTATATATACTGACGACCTTAGTGTTTGATGATAAAGGGAC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTTAAAGTATATATACTGACGACCTTAGTGTTTGATGATAAAGGGACTT  800

seq1  TTTTTGTTGGTAAAGAGTTCTGTTAATCTCTAGACTATAATTACCCACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGGTAAAGAGTTCTGTTAATCTCTAGACTATAATTACCCACTT  850

seq1  TGGTGTCAAAATTTAGAATAAACTATTATTTCTTCCGTTCCCCTTTCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCAAAATTTAGAATAAACTATTATTTCTTCCGTTCCCCTTTCCAG  900

seq1  ATATTTGTTTTTAATTATCAACATGATCTAAGATCTCTACACCAATGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTTTTTAATTATCAACATGATCTAAGATCTCTACACCAATGGAA  950

seq1  AATTAGCTATTTTTAAACTACTGCTTAAGCAATAGTTAATTTTCCAAACA  999
      |||||||||||||||||||||||||||||| |||| || |||||||||| 
seq2  AATTAGCTATTTTTAAACTACTGCTTAAGC-ATAG-TATTTTTCCAAAC-  997

seq1  AAAGCAGAGTGCTTGTGAATTCGAGTGCGTTATTTCATAATTTCTGTCCT  1049
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  AAAGCAGAGTGCTTGTGAATTCGAGTGCGTTATTTCATA--TTCTGTCCT  1045

seq1  AAAACCTACCCATGATTTTGTATGTTAATATACCATACATCTTTTAATTC  1099
       ||||||| ||||||||||||||||| ||||| |||||||||||  ||||
seq2  -AAACCTA-CCATGATTTTGTATGTT-ATATA-CATACATCTTT--ATTC  1089

seq1  AAAGTCCAACTCCAGGCCAGTGCCATTTTTAGCCTTTCCAAATGGTATTC  1149
       |||||  ||| |||| ||||||    ||||||| |  | ||||   |||
seq2  -AAGTC--ACT-CAGG-CAGTGC---ATTTAGCCCT--CCAATG--CTTC  1127

seq1  ATCTCTCCAGTAATGCTCTAA  1170
      |||||| ||| ||||||||||
seq2  ATCTCT-CAGGAATGCTCTAA  1147


seq1: chr2_6863996_6865009
seq2: B6Ng01-198E08.g_65_1083 (reverse)

seq1  GTGTGTGTGTATGTGT-GTGTGA-GAGAGAGAGAGAGAGA-GAGA-GACA  46
      |||||| ||||||||| |||||| | |||||||||||||| |||| ||||
seq2  GTGTGTATGTATGTGTAGTGTGAGGGGAGAGAGAGAGAGAGGAGAGGACA  50

seq1  GAGAGAGAGAGAGACAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGA  96
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGAGAGACAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGA  100

seq1  GAGAGAGAGATGGAGAGAGAGACAGAGGGAGAGACAGAGAGAGAGAGACA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGATGGAGAGAGAGACAGAGGGAGAGACAGAGAGAGAGAGACA  150

seq1  GAGGGAGAGACAGAGAGAGAGATCTTATCTTCCTGGGGCCCATATAAATC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGACAGAGAGAGAGATCTTATCTTCCTGGGGCCCATATAAATC  200

seq1  TCTCTCAGCCTGTATTATCTTCCCATCATGAGTGAGCAGCTAT-AATGAC  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCTCAGCCTGTATTATCTTCCCATCATGAGTGAGCAGCTATAAATGAC  250

seq1  AGCCACCTGTTTTAATGACAGAGCCAGGATGGCAGCATTTTCAGCAATGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTGTTTTAATGACAGAGCCAGGATGGCAGCATTTTCAGCAATGT  300

seq1  TGTTAATCTGCCTAACCTTTTCCTTCAGGAATGCCACCCCCACCCTCTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATCTGCCTAACCTTTTCCTTCAGGAATGCCACCCCCACCCTCTCA  350

seq1  CAGCCACATGCCAATTCCAGAGCACCTGTGCAGGGCTAATTTTAAAAGGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATGCCAATTCCAGAGCACCTGTGCAGGGCTAATTTTAAAAGGT  400

seq1  AAATTCCTCCCCAAGGGGGCTTCCCTGCCTACACCCATGCCCTGCTAGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTCCCCAAGGGGGCTTCCCTGCCTACACCCATGCCCTGCTAGAG  450

seq1  GAATGGCGTAAATCTTGCACTTTCCGTCACTATGGCTTTCTCAATCAAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCGTAAATCTTGCACTTTCCGTCACTATGGCTTTCTCAATCAAAG  500

seq1  CAGCAGGGGGAAAAATGGAAGACAGAAACATGTTGTTTGAGAAGCCACAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGGGAAAAATGGAAGACAGAAACATGTTGTTTGAGAAGCCACAT  550

seq1  TAACAGACTGTAATAGCCCAGTTAGAAATTTGTCAACATCATTAACTGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGACTGTAATAGCCCAGTTAGAAATTTGTCAACATCATTAACTGCC  600

seq1  ACTTTCTCTCTACTCCTATCCTGGAGCAGCTGCTGACAGACTCTCACTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTCTACTCCTATCCTGGAGCAGCTGCTGACAGACTCTCACTGT  650

seq1  CCCTTCCTCGGGATCATTGACAGGTGTGTAAAGCCAGCAACACCTAGGGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCGGGATCATTGACAGGTGTGTAAAGCCAGCAACACCTAGGGC  700

seq1  TCTAGTGCCAAGGCCACCTCGACACTGCTCATCACTCACATACACAACCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCCAAGGCCACCTCGACACTGCTCATCACTCACATACACAACCA  750

seq1  GGAAGGGCTCCCCGAGTTCTGGTCACACCCAACTGTCCCCAGCAACCTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCTCCCCGAGTTCTGGTCACACCCAACTGTCCCCAGCAACCTTT  800

seq1  TTGGTAACCATCTCTGGCCACCAGCACTAGCCAACTAAGTCTGGCTCACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACCATCTCTGGCCACCAGCACTAGCCAACTAAGTCTGGCTCACA  850

seq1  GCGTGGCAAATACTGACATCACACCAGCCTCAGAGCTGTGCGTTCCTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCAAATACTGACATCACACCAGCCTCAGAGCTGTGCGTTCCTCTT  900

seq1  GCTTGCACCAGCTGAAGGGCCGTGGGCAGGGCAGGCTTCTTGTTTCTCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACCAGCTGAAGGGCCGTGGGCAGGGCAGGCTTCTTGTTTCTCTG  950

seq1  ACAAAATGCTAGTCCACAGAGAGCAGTTTCTCGGTGAATACTTACAGCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGCTAGTCCACAGAGAGCAGTTTCTCGGTGAATACTTACAGCTT  1000

seq1  TCTTCCATCCCTTGAATTC  1014
      |||||||||||||||||||
seq2  TCTTCCATCCCTTGAATTC  1019


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