BAC Information

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BAC

Clone NameB6Ng01-198G15
Chromosome2 (Build37)
Map Location 90,374,954 - 90,511,304
singlet/doubletdoublet
Overlap genePtprj
Upstream geneOlfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, 4933423P22Rik
Downstream geneNup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198G15.bB6Ng01-198G15.g
ACCGA020018GA020019
length1,1981,120
definitionB6Ng01-198G15.b B6Ng01-198G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,510,105 - 90,511,304)(90,374,954 - 90,376,060)
sequence
gaattcaaggccagcctggtctatagagtgagttctaggacagccaaggc
tatacattaaagccctgtcttgaaaaccaaagccctcctctgccaaataa
aaacctttctgcccattccctcaagagaataaaaaggctcaaatcataaa
aatagaatttttagaaacattaatccttccttattttatccaccaagttt
catttctatgcaggtgccaaaagagtcaccaggcaaataaaataagttgc
tttctcattcattggagcctggtgtcagtggcttgagcagggtttgggac
tttgataataggcttgagctggaggtcagaggagaaagctcttctgaatc
ctaggctttttttgttttattttggctaggctttgtcactcctacaagaa
tgtctggaaattaaataagttgaaatatataactgaaatttcagacctgg
caaaatgtcttcaggcaaccacaggtccacacccagtgattgttatgttt
ctctagcaccctccaggaccctgattacgcaccaatttctcctgagtagc
ggtgtgtggagccaagtcagtaacggtaatgttccttgtctgtcttcttg
ggcttgccctgacgctggcctgacaatgccaggctcgggaagtatttgtt
tctgaaacctggccaagaagtctaacaattctctcccttcctttctactg
cccttgtcttccgtattgatgccaagtctggtgttttccttgtctagaga
ccatacaagtaaggaaatgaactttcttgggataagacaggcaacttagc
agaaaatgctctctttgttctcattcaaatgactttttctcagatgacat
ccatgtttgaagctttccacactccttcgagtctccaagagccttgtgag
aagagcaggaggtaggtgcttagattctgattttttatttttgagacaag
atgtcatgcagcccaggcagagctcaaagatgttatgatccttttaacta
cctttgaattccctgatcccttctgccttccgcctccagatattggaatg
caggcagggtaccagttatgcctagctatgagtttgaattttccctgatt
atcagaaagagctgagaaacagttaaagcttgccatggtatttagtcaaa
catcctagttgggatggacccatttgaaacactgtttaatggccaagg
gaattcactacaagcttcctatgggcaaggcagcacagcagcctcaactg
cagagaagtcaaagtgacgtgacatgccataaagagaagggttccacatg
acagacacagcagctgcaaaggcaccgggggctgagaagacaaaccgtgt
gaaggggtcatgcttaagaagcaaagaagagtgatctgaagtgagccttg
tgaacagcagggccggggccatccgagccatgcgtgaggacttccattct
ctgctctgccacctaccacatggtggctatctgcctgtgttctgtatcac
ccactggcttccacaaactcagccctccaacatgcagtatctctctgtct
taacaactctttctagttcatctgaccaaagtgtcccaaacctcctctgt
accttctcctgatgctgagagaagagagtttagaaaaagactgtggtcat
gagaactgtgcaacacaagttcatgagctagagcttgcctagcacatttg
aggccctgagttccatccctggaaaagaggaagggtgggaagtcaaaagg
aaggtctattttacatctctacacatgggagaaatgtcatttgactgacc
atagctggtgactgatgctccccagcagtaatgctgagaccccctatatg
agttctaaactgtgcaggttatgttgtaaacatctgacttgagacagcct
tcctaaatcaaatattgctcttacatgtgatattttccaaaccatgtgat
agtcctttaatatgagacacacagtgtacactacataagacaacccgtcc
tcatgtgagatgaggaacactctcatctagcaaagcccttaacaacagtc
agccatgggaaatacaaagtaaacggacttctggagatcgcaagtaagat
atgcttactcatgaagagcaatacagaccttgttttttgctggaagactc
tggaactccaacaggtaaaggacacaggagacataataccatcagagatg
gcactggatttaaaggcagggcagattttgggggtttaatctttgattgt
agcttggtgagagggctcctgtgatgtggtaaaggatttcgctattacaa
accatggaggagcctaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90510105_90511304
seq2: B6Ng01-198G15.b_44_1241 (reverse)

seq1  CCTTGGCCTTTAAACATGTTTTTAAAATGGGTTCATACCCAACTAAGGAT  50
      |||||||| ||||||| || ||| |||||||| ||| ||||||| |||| 
seq2  CCTTGGCCATTAAACA-GTGTTTCAAATGGGTCCAT-CCCAACT-AGGA-  46

seq1  TGTTTGACTAAATA-CATGGCAAAGCCTTTTACTGTTTCTCAGCTCTTTC  99
      |||||||||||||| ||||||||   |||| |||||||||||||||||||
seq2  TGTTTGACTAAATACCATGGCAA--GCTTTAACTGTTTCTCAGCTCTTTC  94

seq1  TTGATAATCA-GGAAAATTCAAAACTCATAGCTAGGCAT-ACTGGTA-CC  146
       ||||||||| ||||||||| |||||||||||||||||| ||||||| ||
seq2  -TGATAATCAGGGAAAATTC-AAACTCATAGCTAGGCATAACTGGTACCC  142

seq1  TGCCTGCATTCCAATATTCTGGAGGCGGAA-GCAGAA-GGATCA-GGAAT  193
      |||||||||||||||| ||||||||||||| |||||| |||||| |||||
seq2  TGCCTGCATTCCAATA-TCTGGAGGCGGAAGGCAGAAGGGATCAGGGAAT  191

seq1  TCAAAGGTAGTTTAAAAGATCATAACATCTTTGAGCTCTGCCTGGGCTGC  243
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  TCAAAGGTAGTTAAAAGGATCATAACATCTTTGAGCTCTGCCTGGGCTGC  241

seq1  ATGACATCTTGTCTCAAAAATAAAAAATCAGAATCTTAGCACCTACCTCC  293
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGACATCTTGTCTCAAAAATAAAAAATCAGAATCTAAGCACCTACCTCC  291

seq1  TGCTCTTCTCACAAGGCTCTTGGAGACTCGAAGGAGTGTGGAAAGCTTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTCACAAGGCTCTTGGAGACTCGAAGGAGTGTGGAAAGCTTCA  341

seq1  AACATGGATGTCATCTGAGAAAAAGTCATTTGAATGAGAACAAAGAGAGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGATGTCATCTGAGAAAAAGTCATTTGAATGAGAACAAAGAGAGC  391

seq1  ATTTTCTGCTAAGTTGCCTGTCTTATCCCAAGAAAGTTCATTTCCTTACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGCTAAGTTGCCTGTCTTATCCCAAGAAAGTTCATTTCCTTACT  441

seq1  TGTATGGTCTCTAGACAAGGAAAACACCAGACTTGGCATCAATACGGAAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTCTCTAGACAAGGAAAACACCAGACTTGGCATCAATACGGAAG  491

seq1  ACAAGGGCAGTAGAAAGGAAGGGAGAGAATTGTTAGACTTCTTGGCCAGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCAGTAGAAAGGAAGGGAGAGAATTGTTAGACTTCTTGGCCAGG  541

seq1  TTTCAGAAACAAATACTTCCCGAGCCTGGCATTGTCAGGCCAGCGTCAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAACAAATACTTCCCGAGCCTGGCATTGTCAGGCCAGCGTCAGG  591

seq1  GCAAGCCCAAGAAGACAGACAAGGAACATTACCGTTACTGACTTGGCTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCCAAGAAGACAGACAAGGAACATTACCGTTACTGACTTGGCTCC  641

seq1  ACACACCGCTACTCAGGAGAAATTGGTGCGTAATCAGGGTCCTGGAGGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCGCTACTCAGGAGAAATTGGTGCGTAATCAGGGTCCTGGAGGGT  691

seq1  GCTAGAGAAACATAACAATCACTGGGTGTGGACCTGTGGTTGCCTGAAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAAACATAACAATCACTGGGTGTGGACCTGTGGTTGCCTGAAGA  741

seq1  CATTTTGCCAGGTCTGAAATTTCAGTTATATATTTCAACTTATTTAATTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCCAGGTCTGAAATTTCAGTTATATATTTCAACTTATTTAATTT  791

seq1  CCAGACATTCTTGTAGGAGTGACAAAGCCTAGCCAAAATAAAACAAAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATTCTTGTAGGAGTGACAAAGCCTAGCCAAAATAAAACAAAAAA  841

seq1  AGCCTAGGATTCAGAAGAGCTTTCTCCTCTGACCTCCAGCTCAAGCCTAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGATTCAGAAGAGCTTTCTCCTCTGACCTCCAGCTCAAGCCTAT  891

seq1  TATCAAAGTCCCAAACCCTGCTCAAGCCACTGACACCAGGCTCCAATGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGTCCCAAACCCTGCTCAAGCCACTGACACCAGGCTCCAATGAA  941

seq1  TGAGAAAGCAACTTATTTTATTTGCCTGGTGACTCTTTTGGCACCTGCAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGCAACTTATTTTATTTGCCTGGTGACTCTTTTGGCACCTGCAT  991

seq1  AGAAATGAAACTTGGTGGATAAAATAAGGAAGGATTAATGTTTCTAAAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAACTTGGTGGATAAAATAAGGAAGGATTAATGTTTCTAAAAA  1041

seq1  TTCTATTTTTATGATTTGAGCCTTTTTATTCTCTTGAGGGAATGGGCAGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTTATGATTTGAGCCTTTTTATTCTCTTGAGGGAATGGGCAGA  1091

seq1  AAGGTTTTTATTTGGCAGAGGAGGGCTTTGGTTTTCAAGACAGGGCTTTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTTATTTGGCAGAGGAGGGCTTTGGTTTTCAAGACAGGGCTTTA  1141

seq1  ATGTATAGCCTTGGCTGTCCTAGAACTCACTCTATAGACCAGGCTGGCCT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGCCTTGGCTGTCCTAGAACTCACTCTATAGACCAGGCTGGCCT  1191

seq1  TGAATTC  1200
      |||||||
seq2  TGAATTC  1198

seq1: chr2_90374954_90376060
seq2: B6Ng01-198G15.g_65_1184

seq1  GAATTCACTACAAGCTTCCTATGGGCAAGGCAGCACAGCAGCCTCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACAAGCTTCCTATGGGCAAGGCAGCACAGCAGCCTCAACTG  50

seq1  CAGAGAAGTCAAAGTGACGTGACATGCCATAAAGAGAAGGGTTCCACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGTCAAAGTGACGTGACATGCCATAAAGAGAAGGGTTCCACATG  100

seq1  ACAGACACAGCAGCTGCAAAGGCACCGGGGGCTGAGAAGACAAACCGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACAGCAGCTGCAAAGGCACCGGGGGCTGAGAAGACAAACCGTGT  150

seq1  GAAGGGGTCATGCTTAAGAAGCAAAGAAGAGTGATCTGAAGTGAGCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGTCATGCTTAAGAAGCAAAGAAGAGTGATCTGAAGTGAGCCTTG  200

seq1  TGAACAGCAGGGCCGGGGCCATCCGAGCCATGCGTGAGGACTTCCATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCAGGGCCGGGGCCATCCGAGCCATGCGTGAGGACTTCCATTCT  250

seq1  CTGCTCTGCCACCTACCACATGGTGGCTATCTGCCTGTGTTCTGTATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGCCACCTACCACATGGTGGCTATCTGCCTGTGTTCTGTATCAC  300

seq1  CCACTGGCTTCCACAAACTCAGCCCTCCAACATGCAGTATCTCTCTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCTTCCACAAACTCAGCCCTCCAACATGCAGTATCTCTCTGTCT  350

seq1  TAACAACTCTTTCTAGTTCATCTGACCAAAGTGTCCCAAACCTCCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTCTTTCTAGTTCATCTGACCAAAGTGTCCCAAACCTCCTCTGT  400

seq1  ACCTTCTCCTGATGCTGAGAGAAGAGAGTTTAGAAAAAGACTGTGGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCCTGATGCTGAGAGAAGAGAGTTTAGAAAAAGACTGTGGTCAT  450

seq1  GAGAACTGTGCAACACAAGTTCATGAGCTAGAGCTTGCCTAGCACATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGTGCAACACAAGTTCATGAGCTAGAGCTTGCCTAGCACATTTG  500

seq1  AGGCCCTGAGTTCCATCCCTGGAAAAGAGGAAGGGTGGGAAGTCAAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGAGTTCCATCCCTGGAAAAGAGGAAGGGTGGGAAGTCAAAAGG  550

seq1  AAGGTCTATTTTACATCTCTACACATGGGAGAAATGTCATTTGACTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTATTTTACATCTCTACACATGGGAGAAATGTCATTTGACTGACC  600

seq1  ATAGCTGGTGACTGATGCTCCCCAGCAGTAATGCTGAGACCCCCTATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGGTGACTGATGCTCCCCAGCAGTAATGCTGAGACCCCCTATATG  650

seq1  AGTTCTAAACTGTGCAGGTTATGTTGTAAACATCTGACTTGAGACAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAACTGTGCAGGTTATGTTGTAAACATCTGACTTGAGACAGCCT  700

seq1  TCCTAAATCAAATATTGCTCTTACATGTGATATTTTCCAAACCATGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATCAAATATTGCTCTTACATGTGATATTTTCCAAACCATGTGAT  750

seq1  AGTCCTTTAATATGAGACACACAGTGTACACTACATAAGACAACCCGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTAATATGAGACACACAGTGTACACTACATAAGACAACCCGTCC  800

seq1  TCATGTGAGATGAGGAACACTCTCATCTAGCAAAGCCCTTAACAACAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAGATGAGGAACACTCTCATCTAGCAAAGCCCTTAACAACAGTC  850

seq1  AGCCAT-GGAAATACAAAGTAAACGGACTTCTGGAGATCGCAAGTAAGAT  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGGGAAATACAAAGTAAACGGACTTCTGGAGATCGCAAGTAAGAT  900

seq1  ATGCTTACTCATGAAGAGCAATACAGACCT--GTTTTTGCTGGAAGACTC  947
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  ATGCTTACTCATGAAGAGCAATACAGACCTTGTTTTTTGCTGGAAGACTC  950

seq1  TGGAACTCCAACAGGT-AAGGACACAGGAGACATAATACCATCAGAGATG  996
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGAACTCCAACAGGTAAAGGACACAGGAGACATAATACCATCAGAGATG  1000

seq1  GCACTGGATTTAAAGGCA-GGCAGATTT--GGGGTTAAATCTTGAATTGT  1043
      |||||||||||||||||| |||||||||  |||||| ||||||  |||||
seq2  GCACTGGATTTAAAGGCAGGGCAGATTTTGGGGGTTTAATCTTTGATTGT  1050

seq1  AGGCTGGTGAGAGGGCT-CTGTGAATGGGTAAA-GAATTCGCTA-TACAA  1090
      ||  ||||||||||||| ||||||   |||||| || ||||||| |||||
seq2  AGCTTGGTGAGAGGGCTCCTGTGATGTGGTAAAGGATTTCGCTATTACAA  1100

seq1  A-CAT-GAGGAG-CTAAGTT  1107
      | ||| |||||| |||||||
seq2  ACCATGGAGGAGCCTAAGTT  1120