BAC Information

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BAC

Clone NameB6Ng01-198N02
Chromosome2 (Build37)
Map Location 138,917,100 - 139,074,685
singlet/doubletdoublet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198N02.bB6Ng01-198N02.g
ACCGA020318GA020319
length1,1371,067
definitionB6Ng01-198N02.b B6Ng01-198N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,073,546 - 139,074,685)(138,917,100 - 138,918,164)
sequence
gaattcatagcctgctctttatttgtatctcaagacaggtttcacaaagc
tgcccagactggtcttgaatttgaagtgttctttccttggtttcccaagt
agctggaatggtggccatcagctataaggcctggcgaagagaaactttga
tgcagacactgtccttattgtattgatctattcagggtagacatggaact
ggctctgtgaccatgttgtgttataattgagaccgcgtgcatgctaatat
ctcaaataagaaaagaacatttaaaaatccatcagttggctttctactta
ggaatcatctatttgaaccattctccctatattttttctgactctttaaa
tggggattttatccattactagagagtctgatacatgttctaaggaatct
ctatttgtatcattcgcagcacgatttgaaggcaatatcatgaaggcatc
tccctggggatggtgacagcctaatgaaggaacataggcaatcttcctca
agccattgattaaaaattgatatgcagttgtgaagagaaagacacaaagg
cagtgaagctgtccagaattcttcctgtgcatgaggtgccttaaaaaccc
gttaatcccaaagccaatattcacagtcctttgtgttctcaacagaacat
tagtatcttgttaataagtaggtatgttcttaactttttcaacattggca
tggcaacaagaatttctcattaataatagtaaatattctgaaccaaaaat
ctgatcattcatagcatgccaatgggaaagaactggatgttaaggcagac
actttccctggtttcaagctagtaagatgaaattgaagtatctaacatgg
aggaagagctaggagaaaactgctgtatttatttcacatatggcttttcc
ctatgtctgcctaggctttttagtttcttacctttcatctatctacaaat
atattcctcttcgtacaggaagagagatgatggcaaaggggcctgtcatt
acatgacacattggagaacttatctaaaaacacaaacactatgaactgtg
acatttttagccaaattttctaggatggtggtggattgattgataacgtt
cttccttagtattaagcaattgaatcccacttgttga
gaattctgggagggatatacaggctaggagtttcatgagtgcacaacagg
aagaaggaaagaagagaacaaggggatgaacaaggaaatgatatcagaga
gacattgagagaaattgggatggaaaaaccaaaggatggaatgatagaag
gtgagcatggtccaaacaagcagagatgaaccaggtttccgacttctact
ttttgttctatttctaaagaaatatttttattttttaatttattttatgt
atatgaatcttgtctgcatgtatgcctgtgttccacatatgtttgtagta
ctcacagaggccagagggggaaaaaatcaaatctcctggggctggagcta
taaacagatgttctatagagactcctggtttaaaaaaaaaaagtcatgat
aattcctacagctttaattctttctaggatctacaattatgacctgccag
gcaagatgtgacctctggtgcaacagtggtatgactgctatgtgggtaac
caaccattttaagattaaatttgagggtggctccacaaaaaggcatggtt
tctgtaaaccaggtcaagatttcattgctggagaggtcattaatcataga
gggaacttttactaagtgacttccaaatgtttgtagtaccgcacttttat
caaagcagtggatgagcacttacacaaaagttggtaactagttacaaggg
ggagactcagtgacagtggagagtttggcattcagtgggaaaactatatg
gctcctaccaagactcaggaaatgttttggagaaaggaagtagaaaaagt
ctaagggtgaaaaggtacagcaaaggtcaccttctgggatataatataac
tactatattatggctatctgcataaaacttccacatgattagccaattag
catttatcagatggaatatggagtggttgctagagaagatggtgtctttt
ttcttcagccggtgtagcaacttataagttttctttgcacaagtaaataa
ttttattgtccatgctcagctagatgcttctagttaaacttagtgggtcc
cagactaaagaagacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_139073546_139074685
seq2: B6Ng01-198N02.b_47_1183 (reverse)

seq1  TCAAC-AGTGGGATTCAAAATGCCTAATACTAAGGAGGACCTTATTCATT  49
      ||||| |||||||||| || ||| |||||||||||| || | |  ||| |
seq2  TCAACAAGTGGGATTC-AATTGCTTAATACTAAGGAAGAACGTTATCAAT  49

seq1  CAAACCACCA-CATCCTTAGAAATTTGGCTAAAAATGTCAACAGTTTCAT  98
      ||| |||||| ||||||   ||||||||||||||||||| |||| |||||
seq2  CAATCCACCACCATCCTAGAAAATTTGGCTAAAAATGTC-ACAG-TTCAT  97

seq1  AGTGGTTTGTGTTTTTAAGATAAGTTCTCCAATGTGTCATGTAATGACAG  148
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGT-GTTTGTGTTTTT-AGATAAGTTCTCCAATGTGTCATGTAATGACAG  145

seq1  GCCCCTTTGCCATCATCTCTCTTTCCTGTACGAAGAGGAATATATTTGTA  198
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCCCTTTGCCATCATCTCTC-TTCCTGTACGAAGAGGAATATATTTGTA  194

seq1  GATAGATGAAAGGTAAGAAACTAAAAAGCCTAGGCAGACATA-GGAAAAG  247
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATAGATGAAAGGTAAGAAACTAAAAAGCCTAGGCAGACATAGGGAAAAG  244

seq1  CCATATGTGAAATAAATACAGCAGTTTTCTCCTAGCTCTTCCTCCATGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGTGAAATAAATACAGCAGTTTTCTCCTAGCTCTTCCTCCATGTT  294

seq1  AGATACTTCAATTTCATCTTACTAGCTTGAAACCAGGGAAAGTGTCTGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTCAATTTCATCTTACTAGCTTGAAACCAGGGAAAGTGTCTGCC  344

seq1  TTAACATCCAGTTCTTTCCCATTGGCATGCTATGAATGATCAGATTTTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCCAGTTCTTTCCCATTGGCATGCTATGAATGATCAGATTTTTG  394

seq1  GTTCAGAATATTTACTATTATTAATGAGAAATTCTTGTTGCCATGCCAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAATATTTACTATTATTAATGAGAAATTCTTGTTGCCATGCCAAT  444

seq1  GTTGAAAAAGTTAAGAACATACCTACTTATTAACAAGATACTAATGTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAAGTTAAGAACATACCTACTTATTAACAAGATACTAATGTTCT  494

seq1  GTTGAGAACACAAAGGACTGTGAATATTGGCTTTGGGATTAACGGGTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAACACAAAGGACTGTGAATATTGGCTTTGGGATTAACGGGTTTT  544

seq1  TAAGGCACCTCATGCACAGGAAGAATTCTGGACAGCTTCACTGCCTTTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCACCTCATGCACAGGAAGAATTCTGGACAGCTTCACTGCCTTTGT  594

seq1  GTCTTTCTCTTCACAACTGCATATCAATTTTTAATCAATGGCTTGAGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTCTTCACAACTGCATATCAATTTTTAATCAATGGCTTGAGGAA  644

seq1  GATTGCCTATGTTCCTTCATTAGGCTGTCACCATCCCCAGGGAGATGCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCTATGTTCCTTCATTAGGCTGTCACCATCCCCAGGGAGATGCCT  694

seq1  TCATGATATTGCCTTCAAATCGTGCTGCGAATGATACAAATAGAGATTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATATTGCCTTCAAATCGTGCTGCGAATGATACAAATAGAGATTCC  744

seq1  TTAGAACATGTATCAGACTCTCTAGTAATGGATAAAATCCCCATTTAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACATGTATCAGACTCTCTAGTAATGGATAAAATCCCCATTTAAAG  794

seq1  AGTCAGAAAAAATATAGGGAGAATGGTTCAAATAGATGATTCCTAAGTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAAAAATATAGGGAGAATGGTTCAAATAGATGATTCCTAAGTAG  844

seq1  AAAGCCAACTGATGGATTTTTAAATGTTCTTTTCTTATTTGAGATATTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAACTGATGGATTTTTAAATGTTCTTTTCTTATTTGAGATATTAG  894

seq1  CATGCACGCGGTCTCAATTATAACACAACATGGTCACAGAGCCAGTTCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACGCGGTCTCAATTATAACACAACATGGTCACAGAGCCAGTTCCA  944

seq1  TGTCTACCCTGAATAGATCAATACAATAAGGACAGTGTCTGCATCAAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCCTGAATAGATCAATACAATAAGGACAGTGTCTGCATCAAAGT  994

seq1  TTCTCTTCGCCAGGCCTTATAGCTGATGGCCACCATTCCAGCTACTTGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCGCCAGGCCTTATAGCTGATGGCCACCATTCCAGCTACTTGGG  1044

seq1  AAACCAAGGAAAGAACACTTCAAATTCAAGACCAGTCTGGGCAGCTTTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGGAAAGAACACTTCAAATTCAAGACCAGTCTGGGCAGCTTTGT  1094

seq1  GAAACCTGTCTTGAGATACAAATAAAGAGCAGGCTATGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGTCTTGAGATACAAATAAAGAGCAGGCTATGAATTC  1137

seq1: chr2_138917100_138918164
seq2: B6Ng01-198N02.g_65_1131

seq1  GAATTCTGGGAGGGATATACAGGCTAGGAGTTTCATGAGTGCACAACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGGGATATACAGGCTAGGAGTTTCATGAGTGCACAACAGG  50

seq1  AAGAAGGAAAGAAGAGAACAAGGGGATGAACAAGGAAATGATATCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAAGAAGAGAACAAGGGGATGAACAAGGAAATGATATCAGAGA  100

seq1  GACATTGAGAGAAATTGGGATGGAAAAACCAAAGGATGGAATGATAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGAGAGAAATTGGGATGGAAAAACCAAAGGATGGAATGATAGAAG  150

seq1  GTGAGCATGGTCCAAACAAGCAGAGATGAACCAGGTTTCCGACTTCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATGGTCCAAACAAGCAGAGATGAACCAGGTTTCCGACTTCTACT  200

seq1  TTTTGTTCTATTTCTAAAGAAATATTTTTATTTTTTAATTTATTTTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTATTTCTAAAGAAATATTTTTATTTTTTAATTTATTTTATGT  250

seq1  ATATGAATCTTGTCTGCATGTATGCCTGTGTTCCACATATGTTTGTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATCTTGTCTGCATGTATGCCTGTGTTCCACATATGTTTGTAGTA  300

seq1  CTCACAGAGGCCAGAGGGGGAAAAAATCAAATCTCCTGGGGCTGGAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAGGCCAGAGGGGGAAAAAATCAAATCTCCTGGGGCTGGAGCTA  350

seq1  TAAACAGATGTTCTATAGAGACTCCTGGTTTAAAAAAAAAAAGTCATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGATGTTCTATAGAGACTCCTGGTTTAAAAAAAAAAAGTCATGAT  400

seq1  AATTCCTACAGCTTTAATTCTTTCTAGGATCTACAATTATGACCTGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTACAGCTTTAATTCTTTCTAGGATCTACAATTATGACCTGCCAG  450

seq1  GCAAGATGTGACCTCTGGTGCAACAGTGGTATGACTGCTATGTGGGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGTGACCTCTGGTGCAACAGTGGTATGACTGCTATGTGGGTAAC  500

seq1  CAACCATTTTAAGATTAAATTTGAGGGTGGCTCCACAAAAAGGCATGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTTTAAGATTAAATTTGAGGGTGGCTCCACAAAAAGGCATGGTT  550

seq1  TCTGTAAACCAGGTCAAGATTTCATTGCTGGAGAGGTCATTAATCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAACCAGGTCAAGATTTCATTGCTGGAGAGGTCATTAATCATAGA  600

seq1  GGGAACTTTTACTAAGTGACTTCCAAATGTTTGTAGTACCGCACTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTTTACTAAGTGACTTCCAAATGTTTGTAGTACCGCACTTTTAT  650

seq1  CAAAGCAGTGGATGAGCACTTACACAAAAGTTGGTAACTAGTTACAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGTGGATGAGCACTTACACAAAAGTTGGTAACTAGTTACAAGGG  700

seq1  GGAGACTCAGTGACAGTGGAGAGTTTGGCATTCAGTGGGAAAACTATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCAGTGACAGTGGAGAGTTTGGCATTCAGTGGGAAAACTATATG  750

seq1  GCTCCTACCAAGACTCAGGAAATGTTTTGGAG-AAGGAAGTAGAAAAAGT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTCCTACCAAGACTCAGGAAATGTTTTGGAGAAAGGAAGTAGAAAAAGT  800

seq1  CTAAGGGTGAAAAGGTACAGCAAAGGTCACCTTCT-GGATATAATATAAC  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTAAGGGTGAAAAGGTACAGCAAAGGTCACCTTCTGGGATATAATATAAC  850

seq1  TACTATATTATGGCTATCTGCATAAAACTTCCACATGATTAAGCCAATTA  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TACTATATTATGGCTATCTGCATAAAACTTCCACATGATT-AGCCAATTA  899

seq1  GCATTTATCAAGATGGAATATGGAGTGGTTGCTAGAGAAGATGGTGTC-T  947
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  GCATTTATC-AGATGGAATATGGAGTGGTTGCTAGAGAAGATGGTGTCTT  948

seq1  TTTTCTTCAG-CGGTGTAGCCACTTATAAGTTTTCTTTGCACAAGTAAAT  996
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TTTTCTTCAGCCGGTGTAGCAACTTATAAGTTTTCTTTGCACAAGTAAAT  998

seq1  AATTTTA-TGTCCATGCTCAGCTAAGAAGC-TCTAAGTAAACTTAGTGGG  1044
      ||||||| ||||||||||||||| ||| || ||||  |||||||||||||
seq2  AATTTTATTGTCCATGCTCAGCT-AGATGCTTCTAGTTAAACTTAGTGGG  1047

seq1  TCACAGACAAAAAGAAGACAG  1065
      || |||||  |||||||||||
seq2  TCCCAGAC-TAAAGAAGACAG  1067