BAC Information

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BAC

Clone NameB6Ng01-199B18
Chromosome2 (Build37)
Map Location 72,519,393 - 72,666,368
singlet/doubletdoublet
Overlap geneLOC100039928, 6430710C18Rik
Upstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199B18.bB6Ng01-199B18.g
ACCGA020531GA020532
length1,1611,040
definitionB6Ng01-199B18.b B6Ng01-199B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,519,393 - 72,520,539)(72,665,328 - 72,666,368)
sequence
gaattcttatagttcatgcaatgtagccccaaacttccttaaggcaatcc
tcttgtctcagcctttcaaatatttcaagtatgggattggagtcatgaat
taccatacttggcttcatatttaaatttttgacaaatattgacaatcttc
tagatgccacccctttcctttttatatgtctccctggtggcagcatgctg
gatgtctgcctgtcactctctgatcgttaccagtctgaaagtgagagtgg
ttgaacattgttttcaaacacagtcctcactgttctttaaggttggtggc
ctttttcatatttaaccctctgttgttttgttgttgttgttgttattgtt
gttgtttttaaaccagagatccccagtaccatactaggcagtctgtgagt
gattagagctgcctgctgattgattttacttaaagtctcattagcttggg
tgaaaaggttttcactttggtaattttattcgaaatgttgaacagaacaa
atttgatcgctgcaaggatccgtaacactcgtgcaagcttatctgctgtg
ttggggaatgagagtttattgcatcataaaaatgctaccttacgcttcta
ttgggtgagcattgaaatttttatgagttcttcctaactaaagttatcag
taaataatactcaaatcttgactggactcatcctagattgatgtgactta
tttgataaatcaacaccataaagagactcacagccgagtgccccgacagt
ctgttcaaggatggagggcagattctaactctgcattactaagtcagaat
tcaaggatgaagaccttctgagagtagccgtttcaggagagggaacagca
gtgagctcttctccctttagtgtgggctctcacatcatctctcacctggg
acacagagcttgaagctttcatcattgtgagggttttctgggtggtcttc
caactcacactcagagttccttgtttccttttcaacgaggctaggaacct
ttccagaaaagatttacagcccagtcatttgagccacaacagccatggag
ttaagcacctctaacttcacactgcatatgattcctcagatttattttca
ttttcatttttatagaatggaaaattgaatttggggagtgatttaacatt
acaccaattcc
gaattcctgagggtagttaatacccagttactttctatgcctgttggttt
tatattaccttttggatcatttccttaggacacactccctaagccaaggt
gggcaccttgttttctaggtttaccattacacaatgtaaaaaaagcattt
caagagagctatttcaagggaaacctgctttcctgggcttgtatgtccta
gagcccattgggaacactggaaatctggttgtactctgcttcttcgcttg
tagaaggactgcaggggcctcctatggtgggtggtcacacctacagctgc
cttctgaaagcctcagggagctgagcgcccattgcttgcgtatgaggcag
ggtcacatgcatcctagcctggcctggcactcagtaagtagccgagaatg
gctttgaacttcaggtcctcatgccttcgtttcccaaaggcagggattat
gagcgcgtgtcaccatgcccaatttatgtggtgctgaggattgaacccag
ggcctcatgtatgttaagtatgtcctctactaactgagctatatcactag
ccctagaaagctgagtttttgaaggaacagctgattctggcaggtgagta
tcactttcttcttttctgctgcaagagctgttcattgactggtcataggt
ggtgaacaaatatcctaaattgatgactggcttcactggacagcgatgat
ggagaagcttcctccaggatcacagagatcaaagttttttctctcttact
tctagcctgtggcgtgaccagaaccaacaagtcaatggcagctatcacta
agggtcgcctgttatcttcatggagatttgatttttctgaattccacttt
ctagacagggaaatggagtgtgaggagctcagagcaagtcagcagcagcc
ccacagccccaggattccagctaagcgcctgcaggatagaaggcctctgt
agacgcatacagactccattgacatagttttattccggaacatcaagatt
tgcatggagcattcttaaattagatttatttaccgactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72519393_72520539
seq2: B6Ng01-199B18.b_44_1204

seq1  GAATTCTTATAGTTCATGCAATGTAGCCCCAAACTTCCTTAAGGCAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAGTTCATGCAATGTAGCCCCAAACTTCCTTAAGGCAATCC  50

seq1  TCTTGTCTCAGCCTTTCAAATATTTCAAGTATGGGATTGGAGTCATGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTCAGCCTTTCAAATATTTCAAGTATGGGATTGGAGTCATGAAT  100

seq1  TACCATACTTGGCTTCATATTTAAATTTTTGACAAATATTGACAATCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATACTTGGCTTCATATTTAAATTTTTGACAAATATTGACAATCTTC  150

seq1  TAGATGCCACCCCTTTCCTTTTTATATGTCTCCCTGGTGGCAGCATGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCCACCCCTTTCCTTTTTATATGTCTCCCTGGTGGCAGCATGCTG  200

seq1  GATGTCTGCCTGTCACTCTCTGATCGTTACCAGTCTGAAAGTGAGAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGCCTGTCACTCTCTGATCGTTACCAGTCTGAAAGTGAGAGTGG  250

seq1  TTGAACATTGTTTTCAAACACAGTCCTCACTGTTCTTTAAGGTTGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATTGTTTTCAAACACAGTCCTCACTGTTCTTTAAGGTTGGTGGC  300

seq1  CTTTTTCATATTTAACCCTCTGTTGTTTTGTTGTTGTTGTTGTTATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATATTTAACCCTCTGTTGTTTTGTTGTTGTTGTTGTTATTGTT  350

seq1  GTTGTTTTTAAACCAGAGATCCCCAGTACCATACTAGGCAGTCTGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTTAAACCAGAGATCCCCAGTACCATACTAGGCAGTCTGTGAGT  400

seq1  GATTAGAGCTGCCTGCTGATTGATTTTACTTAAAGTCTCATTAGCTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGCTGCCTGCTGATTGATTTTACTTAAAGTCTCATTAGCTTGGG  450

seq1  TGAAAAGGTTTTCACTTTGGTAATTTTATTCGAAATGTTGAACAGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGTTTTCACTTTGGTAATTTTATTCGAAATGTTGAACAGAACAA  500

seq1  ATTTGATCGCTGCAAGGATCCGTAACACTCGTGCAAGCTTATCTGCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCGCTGCAAGGATCCGTAACACTCGTGCAAGCTTATCTGCTGTG  550

seq1  TTGGGGAATGAGAGTTTATTGCATCATAAAAATGCTACCTTACGCTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAATGAGAGTTTATTGCATCATAAAAATGCTACCTTACGCTTCTA  600

seq1  TTGGGTGAGCATTGAAATTTTTATGAGTTCTTCCTAACTAAAGTTATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGAGCATTGAAATTTTTATGAGTTCTTCCTAACTAAAGTTATCAG  650

seq1  TAAATAATACTCAAATCTTGACTGGACTCATCCTAGATTGATGTGACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATACTCAAATCTTGACTGGACTCATCCTAGATTGATGTGACTTA  700

seq1  TTTGATAAATCAACACCATAAAGAGACTCACAGCCGAGTGCCCCGACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAATCAACACCATAAAGAGACTCACAGCCGAGTGCCCCGACAGT  750

seq1  CTGTTCAAGGATGGAGGGCAGATTCTAACTCTGCATTACTAAGTCAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAAGGATGGAGGGCAGATTCTAACTCTGCATTACTAAGTCAGAAT  800

seq1  TCAAGGATGAAGACCTTCTGAGAGTAGCCGTTTCAGGAGAGGGAACAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGATGAAGACCTTCTGAGAGTAGCCGTTTCAGGAGAGGGAACAGCA  850

seq1  GTGAGCTCTTCTCCCTTTAGTGT-GGCTCTCACATCATCTCTCACCTGGG  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGAGCTCTTCTCCCTTTAGTGTGGGCTCTCACATCATCTCTCACCTGGG  900

seq1  ACACAGAGCTTGAAGC-TTCATCATTGTGAGGGTTTTCT-GGTGGTC-TC  946
      |||||||||||||||| |||||||||||||||||||||| ||||||| ||
seq2  ACACAGAGCTTGAAGCTTTCATCATTGTGAGGGTTTTCTGGGTGGTCTTC  950

seq1  CAACTCACACTCAGAGTTCCT--GTTCCTTTCCAACGAGGCTAGGAACC-  993
      |||||||||||||||||||||   ||||||| ||||||||||||||||| 
seq2  CAACTCACACTCAGAGTTCCTTGTTTCCTTTTCAACGAGGCTAGGAACCT  1000

seq1  TTCCAG-AAAGAATTACAG-CCAG-CA-TTGAGCCACACCAGCCATGGAG  1039
      |||||| ||||| |||||| |||| || |||||||||| |||||||||||
seq2  TTCCAGAAAAGATTTACAGCCCAGTCATTTGAGCCACAACAGCCATGGAG  1050

seq1  TTAAGCACC-CCAAC-TCACACTGCAATATGA-TCCTCAGA-TTATTTCC  1085
      ||||||||| | ||| ||||||||| |||||| |||||||| |||||| |
seq2  TTAAGCACCTCTAACTTCACACTGC-ATATGATTCCTCAGATTTATTTTC  1099

seq1  ATTTTCA-TTTTATAG-ATAGAAAATTGAAATTTGGGGAGTTGAATTAAC  1133
      ||||||| |||||||| || |||||||| ||||||||||| ||| |||||
seq2  ATTTTCATTTTTATAGAATGGAAAATTG-AATTTGGGGAG-TGATTTAAC  1147

seq1  ATTACACAAATTCC  1147
      ||||||| ||||||
seq2  ATTACACCAATTCC  1161

seq1: chr2_72665328_72666368
seq2: B6Ng01-199B18.g_65_1104 (reverse)

seq1  CCAGTCGGTAATTAAATCTTATTTAAGAATTGCTCCATGCAAATCTTGAT  50
      ||||||||||| ||||||| ||||||||| ||||||||||||||||||||
seq2  CCAGTCGGTAAATAAATCTAATTTAAGAA-TGCTCCATGCAAATCTTGAT  49

seq1  GTTCCGG-ATAAAACTATGTCAATGGAGTTCTGTATGCGTCTACAGAGGC  99
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  GTTCCGGAATAAAACTATGTCAATGGAG-TCTGTATGCGTCTACAGAGGC  98

seq1  CTTCTATTCTGCAGGCGCTTAGCTGGAATCCTGGGGCTGTGGGGCTGCTG  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCCTGCAGGCGCTTAGCTGGAATCCTGGGGCTGTGGGGCTGCTG  148

seq1  CTGACTTGCTCTGAGCTCCTCACACTCCATTTCCCTGTCTAGAAAGTGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGCTCTGAGCTCCTCACACTCCATTTCCCTGTCTAGAAAGTGGA  198

seq1  ATTCAGAAAAATCAAATCTCCATGAAGATAACAGGCGACCCTTAGTGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAAAATCAAATCTCCATGAAGATAACAGGCGACCCTTAGTGATA  248

seq1  GCTGCCATTGACTTGTTGGTTCTGGTCACGCCACAGGCTAGAAGTAAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATTGACTTGTTGGTTCTGGTCACGCCACAGGCTAGAAGTAAGAG  298

seq1  AGAAAAAACTTTGATCTCTGTGATCCTGGAGGAAGCTTCTCCATCATCGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACTTTGATCTCTGTGATCCTGGAGGAAGCTTCTCCATCATCGC  348

seq1  TGTCCAGTGAAGCCAGTCATCAATTTAGGATATTTGTTCACCACCTATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTGAAGCCAGTCATCAATTTAGGATATTTGTTCACCACCTATGA  398

seq1  CCAGTCAATGAACAGCTCTTGCAGCAGAAAAGAAGAAAGTGATACTCACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAATGAACAGCTCTTGCAGCAGAAAAGAAGAAAGTGATACTCACC  448

seq1  TGCCAGAATCAGCTGTTCCTTCAAAAACTCAGCTTTCTAGGGCTAGTGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAATCAGCTGTTCCTTCAAAAACTCAGCTTTCTAGGGCTAGTGAT  498

seq1  ATAGCTCAGTTAGTAGAGGACATACTTAACATACATGAGGCCCTGGGTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCAGTTAGTAGAGGACATACTTAACATACATGAGGCCCTGGGTTC  548

seq1  AATCCTCAGCACCACATAAATTGGGCATGGTGACACGCGCTCATAATCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCAGCACCACATAAATTGGGCATGGTGACACGCGCTCATAATCCC  598

seq1  TGCCTTTGGGAAACGAAGGCATGAGGACCTGAAGTTCAAAGCCATTCTCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGGGAAACGAAGGCATGAGGACCTGAAGTTCAAAGCCATTCTCG  648

seq1  GCTACTTACTGAGTGCCAGGCCAGGCTAGGATGCATGTGACCCTGCCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTACTGAGTGCCAGGCCAGGCTAGGATGCATGTGACCCTGCCTCA  698

seq1  TACGCAAGCAATGGGCGCTCAGCTCCCTGAGGCTTTCAGAAGGCAGCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCAAGCAATGGGCGCTCAGCTCCCTGAGGCTTTCAGAAGGCAGCTGT  748

seq1  AGGTGTGACCACCCACCATAGGAGGCCCCTGCAGTCCTTCTACAAGCGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGACCACCCACCATAGGAGGCCCCTGCAGTCCTTCTACAAGCGAA  798

seq1  GAAGCAGAGTACAACCAGATTTCCAGTGTTCCCAATGGGCTCTAGGACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGTACAACCAGATTTCCAGTGTTCCCAATGGGCTCTAGGACAT  848

seq1  ACAAGCCCAGGAAAGCAGGTTTCCCTTGAAATAGCTCTCTTGAAATGCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCAGGAAAGCAGGTTTCCCTTGAAATAGCTCTCTTGAAATGCTT  898

seq1  TTTTTACATTGTGTAATGGTAAACCTAGAAAACAAGGTGCCCACCTTGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACATTGTGTAATGGTAAACCTAGAAAACAAGGTGCCCACCTTGGC  948

seq1  TTAGGGAGTGTGTCCTAAGGAAATGATCCAAAAGGTAATATAAAACCAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAGTGTGTCCTAAGGAAATGATCCAAAAGGTAATATAAAACCAAC  998

seq1  AGGCATAGAAAGTAACTGGGTATTAACTACCCTCAGGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGAAAGTAACTGGGTATTAACTACCCTCAGGAATTC  1040