BAC Information

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BAC

Clone NameB6Ng01-200D21
Chromosome2 (Build37)
Map Location 155,423,255 - 155,424,239
singlet/doubletsinglet
Overlap geneMyh7b
Upstream genePxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss
Downstream geneTrpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200D21.bB6Ng01-200D21.g
ACCGA021360GA021361
length1,162994
definitionB6Ng01-200D21.b B6Ng01-200D21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcgcctgaggaataccgaagggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacagcactgagat
tccacctcacaccagtcagaatggctaatcaaaaattcaggtgacagcag
atgctggcgaggatgtagagaaagaggaacactcctccattgctggtggg
attataagcttgtacaaccactctggaaatcagtctggcagttcctcaga
aaattggacatagtactaccggaagatccagcaatacctctcctaggcat
atacccagaagatgttccaactggtaataggaacacatgctccactatgt
tcatagcagccttatttataatagccagaagctagaaagaacccagatgt
ccctcaacagaggaaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaacaatgaatttatgaaattcttgggcaaa
tggatgtatctggaggatatcatccttagtgaggtaacccaatcacaaaa
gaagtcattagatatgcactcactgataagtggatattagcccagaaact
tagaatacccaagatacaatttgcaaaacacaagaaaatcaagaagaagg
aagatcaaagtgtggatacttcattcctccttagaatagggaacaaaata
cccatggaaggagttacagagacaaagtttggacctaaggcaaaaagatg
gaccatccagagactaccccacccggggatccatcccataatcagccacc
aaacacagacactattacatatgcccagcaaggttctgctggaaagaccc
tgatacagctgtctcttgtgagctatgccagtgcctggcaaacacagaag
tggatgtcacagtcatctataggacggaacacaagggtccccatggagta
gcttagagaaagtacccaaatgaagcctaaatgggtctgctatcccttat
aggtgaataaccattaatgaaccaaccagtacccccagaagcttcgagtc
tctctagccttgcattatgtagcaagaagatgggccttagttcggccatc
atttggaaagagaggcccctttggtctttgcatctttattatgtctccat
tacaggggaaat
gaattccaggctagccaatgctatacaatgagaccctatctttagggggg
gtaaaattgtttacaaaagggaaatagttcatatggcttaagccaatgta
caaaatggcttatttacaaatgttgcctgcatgtgtgtgtcatgtatgta
tctggtgcctgacaagaccataaaagggtgtagagtcctctggaaatgga
attagctcacttgtttttctccgagaatgggacagggtcttctgcaagag
cagccagcactcttcatcttgagtcatctctcaacctcagggacaaagct
ccgacccagactatgtctcgctggccaagaaaagtcgcaaaggccacaca
tgatgattccattcgtaagaaatgctcaggatacaaaaaaaaaatcataa
agaaagttcatttatttgaaatgtttactacatttatttacttgtatttg
tgcccatgcagaagtcagagcacacctgagggaatcagctctctccttcc
accacacaggacctggggacagaactcaggtcttcaggcttggtgacaaa
aggccatctggaggatcgtctcactggcccagtcctctctcctctctggg
attttctttgcttgtaagtgaaataagattttgtgataggtcatagagga
tcctggagcctagaaatagccacttggccaggaggtggtgatgcacacct
ttaatcccagcactagggaggcagaggcaggtggatttctgagtttgagc
ccagcctgggctacagagtgagttccaggacagccagttcctggaaagaa
aaactctgtctcgaaaaacaaatgtaggaggcggaggaggaggaagaaga
ggagaaggaagaggaaagcttatctgcctaacagtgggtcttagactttt
ctgatggcggtgaccctttaacacaggttccctatgttggggctgacccc
aacatataaaataatttccttgctacttttaattactggtaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155423255_155424239
seq2: B6Ng01-200D21.g_66_1059 (reverse)

seq1  AATTA-CAGTAAT--AAAGTAGCAAAGAAAATATTTT-TATGGTTGGGGT  46
      ||||| |||||||  |||||||||| |||| |||||| ||| ||||||||
seq2  AATTACCAGTAATTAAAAGTAGCAAGGAAATTATTTTATAT-GTTGGGGT  49

seq1  CAG-CACAACATAAGGAA-CTGTATTAAAGGGTCACAG-CATCAG-AAAG  92
      ||| | ||||||| |||| |||| |||||||||||| | |||||| ||||
seq2  CAGCCCCAACATAGGGAACCTGTGTTAAAGGGTCACCGCCATCAGAAAAG  99

seq1  GCTAAGAACCACTGTTAGGAAGGT-AGC-TTCCTCTTCCTCCTCCTCTTC  140
       |||||| ||||||||||| || | ||| ||||||||||| |||||||||
seq2  TCTAAGACCCACTGTTAGGCAGATAAGCTTTCCTCTTCCTTCTCCTCTTC  149

seq1  TTCCTCCTCCTCCGCCTCCTACATTTGTTTTTCGAGACAGAGTTTTTCTT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCCTCCGCCTCCTACATTTGTTTTTCGAGACAGAGTTTTTCTT  199

seq1  TCCAGGAACTGGCTGTCCTGGAACTCACTCTGTAGCCCAGGCTGGGCTCA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAACTGGCTGTCCTGGAACTCACTCTGTAGCCCAGGCTGGGCTCA  249

seq1  AACTCAGAAATCCACCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAGGTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCCACCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAGGTG  299

seq1  TGCATCACCACCTCCTGGCCAAGTGGCTATTTCTAGGCTCCAGGATCCTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACCACCTCCTGGCCAAGTGGCTATTTCTAGGCTCCAGGATCCTC  349

seq1  TATGACCTATCACAAAATCTTATTTCACTTACAAGCAAAGAAAATCCCAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTATCACAAAATCTTATTTCACTTACAAGCAAAGAAAATCCCAG  399

seq1  AGAGGAGAGAGGACTGGGCCAGTGAGACGATCCTCCAGATGGCCTTTTGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGAGGACTGGGCCAGTGAGACGATCCTCCAGATGGCCTTTTGT  449

seq1  CACCAAGCCTGAAGACCTGAGTTCTGTCCCCAGGTCCTGTGTGGTGGAAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCCTGAAGACCTGAGTTCTGTCCCCAGGTCCTGTGTGGTGGAAG  499

seq1  GAGAGAGCTGATTCCCTCAGGTGTGCTCTGACTTCTGCATGGGCACAAAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCTGATTCCCTCAGGTGTGCTCTGACTTCTGCATGGGCACAAAT  549

seq1  ACAAGTAAATAAATGTAGTAAACATTTCAAATAAATGAACTTTCTTTATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAATAAATGTAGTAAACATTTCAAATAAATGAACTTTCTTTATG  599

seq1  ATTTTTTTTTTGTATCCTGAGCATTTCTTACGAATGGAATCATCATGTGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTGTATCCTGAGCATTTCTTACGAATGGAATCATCATGTGT  649

seq1  GGCCTTTGCGACTTTTCTTGGCCAGCGAGACATAGTCTGGGTCGGAGCTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGCGACTTTTCTTGGCCAGCGAGACATAGTCTGGGTCGGAGCTT  699

seq1  TGTCCCTGAGGTTGAGAGATGACTCAAGATGAAGAGTGCTGGCTGCTCTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGAGGTTGAGAGATGACTCAAGATGAAGAGTGCTGGCTGCTCTT  749

seq1  GCAGAAGACCCTGTCCCATTCTCGGAGAAAAACAAGTGAGCTAATTCCAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGACCCTGTCCCATTCTCGGAGAAAAACAAGTGAGCTAATTCCAT  799

seq1  TTCCAGAGGACTCTACACCCTTTTATGGTCTTGTCAGGCACCAGATACAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGACTCTACACCCTTTTATGGTCTTGTCAGGCACCAGATACAT  849

seq1  ACATGACACACACATGCAGGCAACATTTGTAAATAAGCCATTTTGTACAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACACACACATGCAGGCAACATTTGTAAATAAGCCATTTTGTACAT  899

seq1  TGGCTTAAGCCATATGAACTATTTCCCTTTTGTAAACAATTTTACCCCCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAAGCCATATGAACTATTTCCCTTTTGTAAACAATTTTACCCCCC  949

seq1  CTAAAGATAGGGTCTCATTGTATAGCATTGGCTAGCCTGGAATTC  985
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATAGGGTCTCATTGTATAGCATTGGCTAGCCTGGAATTC  994