BAC Information

Click to search

BAC

Clone NameB6Ng01-200H13
Chromosome2 (Build37)
Map Location 27,956,080 - 28,148,699
singlet/doubletdoublet
Overlap geneOlfm1
Upstream geneAdamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1, Fcnb
Downstream geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200H13.bB6Ng01-200H13.g
ACCGA021522GA021523
length1,1261,072
definitionB6Ng01-200H13.b B6Ng01-200H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,956,080 - 27,957,182)(28,147,550 - 28,148,699)
sequence
gaattcatcgcatgcactctctcaggctcacatgtgtgcacattcatgat
cttgagtacactctccaacacacttcgtctaccacccgcactccatccca
ccagaagcttccctcaggccagaacaagctggatgcactccctgaagcaa
tgccgcacatgctcagtagcagccacagaaggcagtcagctcacctctag
acaccaggacatacgggcccctacccagctctgggggcacacttgccatc
ttagtcttagaggactgtatggacagacaggaacaggctgagctgctcta
ggttgcttccctagtacagaccacaatgacaacctgctgtgtttcggtac
actttgccgtgctaatcagcccgagggccagcgggttgtgtacagctgag
ggagaagagagctaggcctcaacgcatagccctggctgctgcaccagaca
cagtagtgttcttatcttcaaatgacacacccactgaaaactcactaacc
tatgatctttcaggcagtaccaacagggtggaagcttctttggaaaattc
tagaaagttctcagcatcatgaaaagccattttggctattccaaactggc
ctgccaaggctgactacaccaccatctgtaagagatcctgattcttcaag
tgacaccatagccttgactggatgctatgacactagggtcaagtggctgt
tgaccttgaagacgcagcacagaactgttagtctaccccaccctgttccc
agcctcagcacactgaagccctgcttatccagctcccatccctttggttt
tgtttgctttcccttgaagcaaaccctttcttctatgaggctggcagcca
ggatcacctggccgacttttatttccacaagaggctggacaggtgtcagc
tcgttgactgttggcctatgtagcgtcccctggtgggacttcctagaaaa
aaaaaaaacagcaggccagtccatctcatcttgtgatgacacctcagacg
gattcctcgtgcccaccttgcttctagtattccccagactttcatcttgg
ccagcatataccatgtggggccaggtgtgtttccagggcagcctcacccc
tttgggctttgttcacattgtgcgcg
gaattcagcatagcgacacactattgacttattcaaacattaacagaaag
aacacagtgcatcaggactttgttcctgtgggctgggggcttatctttgt
tcacataacaaccagttgatgtatatgactttactcggcgccaaggggta
acagaaaggaggttccggccagatggtgtgaacttagataatgtagcccc
atttgtccttgaataccttttcatctttacggccaagatgttcttaggaa
tgccttatcaacagccctgccttggcctgcttgggggcttgttctgcttt
gttctcagtcccagacccgggcagtgggctcttaaacaactcacaagtta
caatattttatcttccttcagaaggaggacactggtgcatggcagggttg
gtgagaggacccaggtatgcatcatgagcagctcagcacaccttagtagc
ctttagtgaaaccttgaatacctgggcccatctgaaagactccttgtctt
ctgaattctcgcccctggggcttggattctgcccggttaaggtcatcgtc
ttttctcactatgcctggagctttgtcagtaggggaggtgggcagagtgt
ttctaagtcagcaccagagccatgggacaagggtgtttcagcttgtagga
aactgaccttacaacgtcacgtaatgactgcaggggtgagccactgcagg
ggtgaggcactggcactccagaaagtagagatgagacccaagcaactact
tccccacccctgccgggagatttcccagttcccagctcccctgatgatgt
gccagaggcccaggtgttcatgctaggtagagccagccttgggagcctat
ggctggatctttaagtgtctcccagaggcccatggttaaagggtctggtc
tcccagcctggggctgttttcagctgtggaaaacccttagcaggtgaccg
tctctatgggaagaaatttgtgcactaaagtgtgcctttggaagaatatt
ggggacaccagtctctttcttgccttgcccctggctggtgttctttcatt
tttcccccagcaagccccagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_27956080_27957182
seq2: B6Ng01-200H13.b_46_1171

seq1  GAATTCATCGCATGCACTCTCTCAGGCTCACATGTGTGCACATTCATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGCATGCACTCTCTCAGGCTCACATGTGTGCACATTCATGAT  50

seq1  CTTGAGTACACTCTCCAACACACTTCGTCTACCACCCGCACTCCATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTACACTCTCCAACACACTTCGTCTACCACCCGCACTCCATCCCA  100

seq1  CCAGAAGCTTCCCTCAGGCCAGAACAAGCTGGATGCACTCCCTGAAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCTTCCCTCAGGCCAGAACAAGCTGGATGCACTCCCTGAAGCAA  150

seq1  TGCCGCACATGCTCAGTAGCAGCCACAGAAGGCAGTCAGCTCACCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCACATGCTCAGTAGCAGCCACAGAAGGCAGTCAGCTCACCTCTAG  200

seq1  ACACCAGGACATACGGGCCCCTACCCAGCTCTGGGGGCACACTTGCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGACATACGGGCCCCTACCCAGCTCTGGGGGCACACTTGCCATC  250

seq1  TTAGTCTTAGAGGACTGTATGGACAGACAGGAACAGGCTGAGCTGCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTAGAGGACTGTATGGACAGACAGGAACAGGCTGAGCTGCTCTA  300

seq1  GGTTGCTTCCCTAGTACAGACCACAATGACAACCTGCTGTGTTTCGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTCCCTAGTACAGACCACAATGACAACCTGCTGTGTTTCGGTAC  350

seq1  ACTTTGCCGTGCTAATCAGCCCGAGGGCCAGCGGGTTGTGTACAGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCGTGCTAATCAGCCCGAGGGCCAGCGGGTTGTGTACAGCTGAG  400

seq1  GGAGAAGAGAGCTAGGCCTCAACGCATAGCCCTGGCTGCTGCACCAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGAGCTAGGCCTCAACGCATAGCCCTGGCTGCTGCACCAGACA  450

seq1  CAGTAGTGTTCTTATCTTCAAATGACACACCCACTGAAAACTCACTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGTTCTTATCTTCAAATGACACACCCACTGAAAACTCACTAACC  500

seq1  TATGATCTTTCAGGCAGTACCAACAGGGTGGAAGCTTCTTTGGAAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCTTTCAGGCAGTACCAACAGGGTGGAAGCTTCTTTGGAAAATTC  550

seq1  TAGAAAGTTCTCAGCATCATGAAAAGCCATTTTGGCTATTCCAAACTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTTCTCAGCATCATGAAAAGCCATTTTGGCTATTCCAAACTGGC  600

seq1  CTGCCAAGGCTGACTACACCACCATCTGTAAGAGATCCTGATTCTTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGGCTGACTACACCACCATCTGTAAGAGATCCTGATTCTTCAAG  650

seq1  TGACACCATAGCCTTGACTGGATGCTATGACACTAGGGTCAAGTGGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCATAGCCTTGACTGGATGCTATGACACTAGGGTCAAGTGGCTGT  700

seq1  TGACCTTGAAGACGCAGCACAGAACTGTTAGTCTACCCCACCCTGTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGAAGACGCAGCACAGAACTGTTAGTCTACCCCACCCTGTTCCC  750

seq1  AGCCTCAGCACACTGAAGCCCTGCTTATCCAGCTCCCATCCCTTTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGCACACTGAAGCCCTGCTTATCCAGCTCCCATCCCTTTGGTTT  800

seq1  TGTTTGCTTT-CCTTGAAGCAAAACCCTTCTTCTATGAGGCTGGCAGCCA  849
      |||||||||| |||||||||||| || |||||||||||||||||||||||
seq2  TGTTTGCTTTCCCTTGAAGCAAACCCTTTCTTCTATGAGGCTGGCAGCCA  850

seq1  GGATCACCTGGCCGAC-TTTATTTCCACAAGAGGCTGGACAGGTGTCAGC  898
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGATCACCTGGCCGACTTTTATTTCCACAAGAGGCTGGACAGGTGTCAGC  900

seq1  TCGTTGACTGTT-GCCTATGTAGCGTCCCCT-GTGGGACTTCCTAG-AAA  945
      |||||||||||| |||||||||||||||||| |||||||||||||| |||
seq2  TCGTTGACTGTTGGCCTATGTAGCGTCCCCTGGTGGGACTTCCTAGAAAA  950

seq1  AAAAAAAACAGCAGG-CAGTCCATCTCATCTTGTGATGACA-CTCAGACG  993
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  AAAAAAAACAGCAGGCCAGTCCATCTCATCTTGTGATGACACCTCAGACG  1000

seq1  GA-TCCTCGTGCCCACC-TGCTCCAGGTA-TCCCCAGAC-TTCATCTTGG  1039
      || |||||||||||||| |||| |  ||| ||||||||| ||||||||||
seq2  GATTCCTCGTGCCCACCTTGCTTCTAGTATTCCCCAGACTTTCATCTTGG  1050

seq1  CAGGCA-ATACCA--TGGGGC--AGTGTG-TTCCA-GGCAG-CTCAACCC  1081
      |  ||| ||||||  ||||||   ||||| ||||| ||||| |||| |||
seq2  CCAGCATATACCATGTGGGGCCAGGTGTGTTTCCAGGGCAGCCTCACCCC  1100

seq1  -TTGGGCTT--GTCACA-TGTGCGCG  1103
       ||||||||   ||||| ||||||||
seq2  TTTGGGCTTTGTTCACATTGTGCGCG  1126

seq1: chr2_28147550_28148699
seq2: B6Ng01-200H13.g_71_1142 (reverse)

seq1  AACTGGGGCTTCCCCAAAGATGAGATTCAGCTCTCCACCACCATGACAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCAGATCACAGTTTCAAATGATTCAGTCAGCAGTTGGCTGGCTACTGG  100
                                                   |||||
seq2  --------------------------------------------AACTGG  6

seq1  GGC-TGCTGGGGGGAAAATGGAAGAACA-CAGCCA-GGGCAA-GCAAGAA  146
      ||| ||||||||| |||||| ||||||| |||||| |||||| |||||||
seq2  GGCTTGCTGGGGGAAAAATGAAAGAACACCAGCCAGGGGCAAGGCAAGAA  56

seq1  AGAGACTGGTGTCCC--ATTATCCTCCAAA-GCACAC-TTAGTGGCAC-A  191
      |||||||||||||||  ||  || |||||| |||||| ||||| |||| |
seq2  AGAGACTGGTGTCCCCAATATTCTTCCAAAGGCACACTTTAGT-GCACAA  105

seq1  ATTACTTCCCGT-GAGAC-GTCACCTGCTAAGG--TTTCCACAGCCTGAA  237
      ||| |||||| | ||||| ||||||||||||||  ||||||||||   ||
seq2  ATTTCTTCCCATAGAGACGGTCACCTGCTAAGGGTTTTCCACAGCTGAAA  155

seq1  ACAGCCCCAGGCT-GGAGACCAGA-CCTTTACCCATGGGCCTCTGGGAGA  285
      ||||||||||||| |||||||||| |||||| ||||||||||||||||||
seq2  ACAGCCCCAGGCTGGGAGACCAGACCCTTTAACCATGGGCCTCTGGGAGA  205

seq1  CACTT-AAGATCCAGCCATAGGCTCCCAAGGCTGGCTCTACCTAGCATGA  334
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAGATCCAGCCATAGGCTCCCAAGGCTGGCTCTACCTAGCATGA  255

seq1  ACACCTGGGCCTCTGGCACATCATCAGGGGAGCTGGGAACTGGGAAATCT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGGCCTCTGGCACATCATCAGGGGAGCTGGGAACTGGGAAATCT  305

seq1  CCCGGCAGGGGTGGGGAAGTAGTTGCTTGGGTCTCATCTCTACTTTCTGG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCAGGGGTGGGGAAGTAGTTGCTTGGGTCTCATCTCTACTTTCTGG  355

seq1  AGTGCCAGTGCCTCACCCCTGCAGTGGCTCACCCCTGCAGTCATTACGTG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGTGCCTCACCCCTGCAGTGGCTCACCCCTGCAGTCATTACGTG  405

seq1  ACGTTGTAAGGTCAGTTTCCTACAAGCTGAAACACCCTTGTCCCATGGCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTAAGGTCAGTTTCCTACAAGCTGAAACACCCTTGTCCCATGGCT  455

seq1  CTGGTGCTGACTTAGAAACACTCTGCCCACCTCCCCTACTGAC-AAGCTC  583
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGGTGCTGACTTAGAAACACTCTGCCCACCTCCCCTACTGACAAAGCTC  505

seq1  CAGGCATAGTGAGAAAAGACGATGACCTTAACCGGGCAGAATCCAAGCCC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATAGTGAGAAAAGACGATGACCTTAACCGGGCAGAATCCAAGCCC  555

seq1  CAGGGGCGAGAATTCAGAAGACAAGGAGTCTTTCAGATGGGCCCAGGTAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCGAGAATTCAGAAGACAAGGAGTCTTTCAGATGGGCCCAGGTAT  605

seq1  TCAAGGTTTCACTAAAGGCTACTAAGGTGTGCTGAGCTGCTCATGATGCA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTTCACTAAAGGCTACTAAGGTGTGCTGAGCTGCTCATGATGCA  655

seq1  TACCTGGGTCCTCTCACCAACCCTGCCATGCACCAGTGTCCTCCTTCTGA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGTCCTCTCACCAACCCTGCCATGCACCAGTGTCCTCCTTCTGA  705

seq1  AGGAAGATAAAATATTGTAACTTGTGAGTTGTTTAAGAGCCCACTGCCCG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATAAAATATTGTAACTTGTGAGTTGTTTAAGAGCCCACTGCCCG  755

seq1  GGTCTGGGACTGAGAACAAAGCAGAACAAGCCCCCAAGCAGGCCAAGGCA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGGACTGAGAACAAAGCAGAACAAGCCCCCAAGCAGGCCAAGGCA  805

seq1  GGGCTGTTGATAAGGCATTCCTAAGAACATCTTGGCCGTAAAGATGAAAA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTGATAAGGCATTCCTAAGAACATCTTGGCCGTAAAGATGAAAA  855

seq1  GGTATTCAAGGACAAATGGGGCTACATTATCTAAGTTCACACCATCTGGC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCAAGGACAAATGGGGCTACATTATCTAAGTTCACACCATCTGGC  905

seq1  CGGAACCTCCTTTCTGTTACCCCTTGGCGCCGAGTAAAGTCATATACATC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACCTCCTTTCTGTTACCCCTTGGCGCCGAGTAAAGTCATATACATC  955

seq1  AACTGGTTGTTATGTGAACAAAGATAAGCCCCCAGCCCACAGGAACAAAG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTGTTATGTGAACAAAGATAAGCCCCCAGCCCACAGGAACAAAG  1005

seq1  TCCTGATGCACTGTGTTCTTTCTGTTAATGTTTGAATAAGTCAATAGTGT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCACTGTGTTCTTTCTGTTAATGTTTGAATAAGTCAATAGTGT  1055

seq1  GTCGCTATGCTGAATTC  1150
      |||||||||||||||||
seq2  GTCGCTATGCTGAATTC  1072