BAC Information

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BAC

Clone NameB6Ng01-200H18
Chromosome2 (Build37)4 (Build37)
Map Location 29,689,674 - 29,689,843137,354,087 - 137,355,128
singlet/doubletsingletsinglet
Overlap geneUrm1
Upstream geneGtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4
Downstream geneLOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200H18.bB6Ng01-200H18.g
ACCGA021530GA021531
length6601,063
definitionB6Ng01-200H18.b B6Ng01-200H18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,689,674 - 29,689,843)(137,354,087 - 137,355,128)
sequence
gaattcattttaaatgaatataaatatttaaacatttaatatattgttta
ttatgttatacatatatttatatgtacaatatatgtatatctatatatac
atatatatatacacacacatatatatgtctactactcagtaggtggagtc
aggagaatcagaaattcaagaccattcttggttacatattaagttcaagg
ctagcttgggatatatgagaccctgactcaaaaaacgaaacaaaataaaa
aaaaaataagtaaaaagccattatggtgttgcctgccatctgagcactgg
aaaggtagaaacagaaaggtcaccacaaaattgagggcagtctgggctat
atagtgagttccagggcagcctggactacatagagagagcccaggagcct
gaggaggaagaacatgtgctcttatttttttaaaaagatttatttattta
ttatatgtaagtacactgtagctgtcttcagacacaccagaagagggcat
cagatctcatggcagatggttgtgagccaccatgtggttgctggggtttg
aactcaggacctttggaaaagctgtcagtgctcttaaccgtttttttttt
ttttttgctttttgttttaatctatctatctatcttctatctatctatct
atctatctat
gaattcagctcagtggtacagcatttgcctatgtgcaggagaccctgggt
cccagattcagcacagaaggaagcaatcacctgagatggtgtctcccagc
atcccttgcttccctgatctctgggtaccacttttgatgcaaggaggggg
gtcaggccttcacatcaggagcccaaacccgcccccaccccaccccaccc
cctgccctagctctgtcctggctggttggtaggctgacaaggtacctctg
gttaagctgtttggtccagaacatttgtaaatggagcccagattctgcag
ggccaggcctgctcagccggtggaagcagccccttacatagaactctcgc
cgtcttttctccagggtacgattccgagaaataggaaatggcaccacctg
acctccaagctcccgtgcctgagagctgttcgttctttctctttgtccat
attgacttcatgccatgagctccctgcttgaagtaaggcccaagtttcat
agtcacagctgggttgactcacacacctgtaatcctaatattcagagggt
tgaggcaggaggatcacaaatccaagaccaaacaactgcagagagagacc
atatctaaaaaaaaggggtcagggataccaagtaagagccaggggtccag
aagcttagagtagggacctcagtggacaaggacaaaggagaggagacagc
tgggcccctgggggtaggaaagacatctgaactctggtaggtgtttaaag
gtgtgattgttatgtttcaagcaaagctccggttttgtgactcccggggg
ctccctctggccccacctttcaactcaattataaaaatgaacttggagat
ttggaatggaggggccctgctgtattggcttcctgagttcacacagttgg
gtcaggccgcccaaagcagccctacattccagaatgggaagttatagttc
cagttaagtccattccttgagccgtcgtctgaagaacactttctttttgt
gccttgtcaaccagatgtcaagcctcttctttcacagtaaagccttcatt
ttggttaaccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29689674_29689843
seq2: B6Ng01-200H18.b_471_632

seq1  TTTTTTTAATTAATTAATTTATTTATTTATTTATTTAATGTAAGTACACT  50
      ||||||||       ||   |||||||||||||||  |||||||||||||
seq2  TTTTTTTA-------AAAAGATTTATTTATTTATTATATGTAAGTACACT  43

seq1  GTAGCTGTCTTCAGACGCACCAGAAGAGGGCATCAGATCTCATTACGGGT  100
      |||||||||||||||| ||||||||||||||||||||||||||  | | |
seq2  GTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATGGCAGAT  93

seq1  GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGA  150
      |||||||||||||||||||||||||||| ||||||||| ||||||| |||
seq2  GGTTGTGAGCCACCATGTGGTTGCTGGGGTTTGAACTCAGGACCTTTGGA  143

seq1  AGAGCAGTCGGGTGCTCTTA  170
      | ||| |||  |||||||||
seq2  AAAGCTGTC-AGTGCTCTTA  162

seq1: chr4_137354087_137355128
seq2: B6Ng01-200H18.g_68_1130

seq1  GAATTCAGCTCAGTGGTACAGCATTTGCCTATGTGCAGGAGACCCTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCAGTGGTACAGCATTTGCCTATGTGCAGGAGACCCTGGGT  50

seq1  CCCAGATTCAGCACAGAAGGAAGCAATCACCTGAGATGGTGTCTCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTCAGCACAGAAGGAAGCAATCACCTGAGATGGTGTCTCCCAGC  100

seq1  ATCCCTTGCTTCCCTGATCTCTGGGTACCACTTTTGATGCAAGGAGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTGCTTCCCTGATCTCTGGGTACCACTTTTGATGCAAGGAGGGGG  150

seq1  GTCAGGCCTTCACATCAGGAGCCCAAACCCGCCCCCACCCCACCCCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCCTTCACATCAGGAGCCCAAACCCGCCCCCACCCCACCCCACCC  200

seq1  CCTGCCCTAGCTCTGTCCTGGCTGGTTGGTAGGCTGACAAGGTACCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTAGCTCTGTCCTGGCTGGTTGGTAGGCTGACAAGGTACCTCTG  250

seq1  GTTAAGCTGTTTGGTCCAGAACATTTGTAAATGGAGCCCAGATTCTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCTGTTTGGTCCAGAACATTTGTAAATGGAGCCCAGATTCTGCAG  300

seq1  GGCCAGGCCTGCTCAGCCGGTGGAAGCAGCCCCTTACATAGAACTCTCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCCTGCTCAGCCGGTGGAAGCAGCCCCTTACATAGAACTCTCGC  350

seq1  CGTCTTTTCTCCAGGGTACGATTCCGAGAAATAGGAAATGGCACCACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTTCTCCAGGGTACGATTCCGAGAAATAGGAAATGGCACCACCTG  400

seq1  ACCTCCAAGCTCCCGTGCCTGAGAGCTGTTCGTTCTTTCTCTTTGTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAAGCTCCCGTGCCTGAGAGCTGTTCGTTCTTTCTCTTTGTCCAT  450

seq1  ATTGACTTCATGCCATGAGCTCCCTGCTTGAAGTAAGGCCCAAGTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTCATGCCATGAGCTCCCTGCTTGAAGTAAGGCCCAAGTTTCAT  500

seq1  AGTCACAGCTGGGTTGACTCACACACCTGTAATCCTAATATTCAGAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGCTGGGTTGACTCACACACCTGTAATCCTAATATTCAGAGGGT  550

seq1  TGAGGCAGGAGGATCACAAATCCAAGACCAAACAACTGCAGAGAGAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGAGGATCACAAATCCAAGACCAAACAACTGCAGAGAGAGACC  600

seq1  ATATCTAAAAAAAAGGGGTCAGGGATACCAAGTAAGAGCCAGGGGTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAAAAAAAAGGGGTCAGGGATACCAAGTAAGAGCCAGGGGTCCAG  650

seq1  AAGCTTAGAGTAGGGACCTCAGTGGACAAGGACAAAGGAGAGGAGACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAGAGTAGGGACCTCAGTGGACAAGGACAAAGGAGAGGAGACAGC  700

seq1  TGGGCCCCTGGGGGTAGGAAAGACATCTGAACTCTGGTAGGTGTTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCTGGGGGTAGGAAAGACATCTGAACTCTGGTAGGTGTTTAAAG  750

seq1  GTGTGATTGTTATGTTTCAAGCAAAGCTCCGGTTTTGTGACTCCC-GGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGTGATTGTTATGTTTCAAGCAAAGCTCCGGTTTTGTGACTCCCGGGGG  800

seq1  CTCCCTCTGGCCCCACC-TTCAACTC-AGTATAAAAATGAACTTGGAGAT  847
      ||||||||||||||||| |||||||| | |||||||||||||||||||||
seq2  CTCCCTCTGGCCCCACCTTTCAACTCAATTATAAAAATGAACTTGGAGAT  850

seq1  TTGG-ATGGAGGGG-CCTGCTGTA-TGGCTTCCTGAGTCCACACAG-TGG  893
      |||| ||||||||| ||||||||| ||||||||||||| ||||||| |||
seq2  TTGGAATGGAGGGGCCCTGCTGTATTGGCTTCCTGAGTTCACACAGTTGG  900

seq1  GTCAGGCCGCCCAGAGCAGCCCTACA-TCCAGAATGGGGAG-TAAAG-TC  940
      ||||||||||||| |||||||||||| ||||||||||| || || || ||
seq2  GTCAGGCCGCCCAAAGCAGCCCTACATTCCAGAATGGGAAGTTATAGTTC  950

seq1  CAGTAAAGTCCAT--CCTGAGCCGTCGGCTGAGGAACACTTCC--TTTGT  986
      |||| ||||||||  | |||||||||| |||| |||||||| |  |||||
seq2  CAGTTAAGTCCATTCCTTGAGCCGTCGTCTGAAGAACACTTTCTTTTTGT  1000

seq1  GCC-TGTCAACCAGATG-CAAAGCTCTTC-TTCACAGT-AAGCC-TCATT  1031
      ||| ||||||||||||| |||  |||||| |||||||| ||||| |||||
seq2  GCCTTGTCAACCAGATGTCAAGCCTCTTCTTTCACAGTAAAGCCTTCATT  1050

seq1  T--GGTAACCATG  1042
      |  | ||||||||
seq2  TTGGTTAACCATG  1063