BAC Information

Click to search

BAC

Clone NameB6Ng01-201C22
Chromosome2 (Build37)
Map Location 130,436,994 - 130,562,527
singlet/doubletdoublet
Overlap geneUbox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik
Upstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik
Downstream geneLOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201C22.bB6Ng01-201C22.g
ACCGA022031GA022032
length1,202854
definitionB6Ng01-201C22.b B6Ng01-201C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,436,994 - 130,438,176)(130,561,678 - 130,562,527)
sequence
gaattctttagcagttactggtctacccaagatttagggatttcccagaa
cataggactttgaatactgaagtggacaaagtcctgggaaaatggaagga
attatcttctctaaaaggtagctgactgtatgccccagagcttgaagcaa
ccaagctgacattttgttgttgagattcaaaatgtagaggcggggaggta
cagagagctactttggaaagagaatagggtgaccatgacactctgagcat
ctgagtacccatttggggcctataaagaagttgtcatagctgagttacac
aatctgactctgagtttcacaagaacgtaatggaaagtgactctggaaga
tacacatatttaaaagagtaggttcaaaccggttaccagggaggtgagga
ctacctgtcaaatactggaaaagcacttaaccttaaagaatagaaggaac
accaatgcagtgagcaattttagaaatcggatactttagcctttaaaaac
cacctagtacttataatctctaaattgagttacctgtccatccagaaaaa
aatgtggcttgcaacatttttcagacctagttaaaataaaatatagctct
cctagctatttctatatatatatggccactgggacaagaggattaaacac
aaggtgtgggtctaagagacacctgtaacttgatgctgtgtgcaggcaag
tcacaggcttagtgtgtttgaggcactacacaagacacatgtgaacagtt
ttatctgtagtgctgtggaccacacccagcacctcatacatgtaaggcag
acacactataactgactcacgtccttagccttgcttttgttcttagggaa
aagaaagtggaaagaaaaagaaaaagtgaatggttttccccctaagacaa
ttaagattaatattgcactccgtgtttagtaacgcttgttctgaaagttg
catggggttcctgacctttgtcttctttcagagcccttctttcatattgc
ttttcattttcttcctggatttccaactccaaattctctctaactactga
cccttacttcaaccacaactcatttggattcttctttctgttggccttaa
accccaaggatactattcttatttttatattctactgcctgttcagactt
tacgagattgctaactgcttcagcttcacactgaacttgacttttttcag
ac
gaattcttgccttccctctctgtttttctgtggtcccacagtagctctct
ccatagtcattggcagcatgtctttgagactacgggttacatttacatct
gtgacagggcttctcaggaccgggccatatgtagccttatgcttagatta
cctttgctgcttccagatggatggtataccggcaaatcatggacagctct
gaatgtttccatgctgcccacttccaaaaatacctttccagtgccctgga
ggcccaacagaaccgttctgcccgccagtcagcttacatccgcaagaaga
ccaggctgctggtggtactacaagggtgagtgttggagacctgggaacag
aagtgaggatggggacttcgtcattgttgttactttctgtgtgccctaat
gctatggacattcctcagaaagaccaggatgctgttgccatattgtggct
aagggtaactgatagctacatgtttctatgttagcttccatattgtagta
tcaccaagaggtgaggaattagggggtctggtaaaggttctctagtaatc
ttagagtgatagtactgtttagccttgccatctagacaccaaagcctcat
cagttctactcctccctcttctggaattgtagacctagcacctgcatagt
ctgtaaacaccatacccgtttgccagtaactaccccagaagactttcatg
agacccacagtgaaaatgtgcagggtattgttgagcagggagtttctgct
tttctaacttaggtcctaagttcctagtaagtaccgtttcttatcagagt
aaatgtgttatctccctgtctctgtctctgtctctctgagtgtctctgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130436994_130438176
seq2: B6Ng01-201C22.b_48_1249

seq1  GAATTCTTTAGCAGTTACTGGTCTACCCAAGATTTAGGGATTTCCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGCAGTTACTGGTCTACCCAAGATTTAGGGATTTCCCAGAA  50

seq1  CATAGGACTTTGAATACTGAAGTGGACAAAGTCCTGGGAAAATGGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACTTTGAATACTGAAGTGGACAAAGTCCTGGGAAAATGGAAGGA  100

seq1  ATTATCTTCTCTAAAAGGTAGCTGACTGTATGCCCCAGAGCTTGAAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTCTCTAAAAGGTAGCTGACTGTATGCCCCAGAGCTTGAAGCAA  150

seq1  CCAAGCTGACATTTTGTTGTTGAGATTCAAAATGTAGAGGCGGGGAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGACATTTTGTTGTTGAGATTCAAAATGTAGAGGCGGGGAGGTA  200

seq1  CAGAGAGCTACTTTGGAAAGAGAATAGGGTGACCATGACACTCTGAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCTACTTTGGAAAGAGAATAGGGTGACCATGACACTCTGAGCAT  250

seq1  CTGAGTACCCATTTGGGGCCTATAAAGAAGTTGTCATAGCTGAGTTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTACCCATTTGGGGCCTATAAAGAAGTTGTCATAGCTGAGTTACAC  300

seq1  AATCTGACTCTGAGTTTCACAAGAACGTAATGGAAAGTGACTCTGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGACTCTGAGTTTCACAAGAACGTAATGGAAAGTGACTCTGGAAGA  350

seq1  TACACATATTTAAAAGAGTAGGTTCAAACCGGTTACCAGGGAGGTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATTTAAAAGAGTAGGTTCAAACCGGTTACCAGGGAGGTGAGGA  400

seq1  CTACCTGTCAAATACTGGAAAAGCACTTAACCTTAAAGAATAGAAGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTCAAATACTGGAAAAGCACTTAACCTTAAAGAATAGAAGGAAC  450

seq1  ACCAATGCAGTGAGCAATTTTAGAAATCGGATACTTTAGCCTTTAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCAGTGAGCAATTTTAGAAATCGGATACTTTAGCCTTTAAAAAC  500

seq1  CACCTAGTACTTATAATCTCTAAATTGAGTTACCTGTCCATCCAGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGTACTTATAATCTCTAAATTGAGTTACCTGTCCATCCAGAAAAA  550

seq1  AATGTGGCTTGCAACATTTTTCAGACCTAGTTAAAATAAAATATAGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCTTGCAACATTTTTCAGACCTAGTTAAAATAAAATATAGCTCT  600

seq1  CCTAGCTATTTCTATATATATATGGCCACTGGGACAAGAGGATTAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTATTTCTATATATATATGGCCACTGGGACAAGAGGATTAAACAC  650

seq1  AAGGTGTGGGTCTAAGAGACACCTGTAACTTGATGCTGTGTGCAGGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGGGTCTAAGAGACACCTGTAACTTGATGCTGTGTGCAGGCAAG  700

seq1  TCACAGGCTTAGTGTGTTTGAGGCACTACACAAGACACATGTGAACAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCTTAGTGTGTTTGAGGCACTACACAAGACACATGTGAACAGTT  750

seq1  TTATCTGTAGTGCTGTGGACCACACCCAGCACCTCATACATGTAAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTAGTGCTGTGGACCACACCCAGCACCTCATACATGTAAGGCAG  800

seq1  ACACACTATAACTGACTCACGTCCTTAGCCTTGCTTTTGTTCTTAGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTATAACTGACTCACGTCCTTAGCCTTGCTTTTGTTCTTAGGGAA  850

seq1  AAGAAAGTGGAAAGAAAAAGAAAAAGTGAATGGTTTTCCCCCTAAGACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTGGAAAGAAAAAGAAAAAGTGAATGGTTTTCCCCCTAAGACAA  900

seq1  TTAAGATTAATAATGCACTCCGTGTTTAGTAACGCT--GTCTGAAAGTTG  948
      |||||||||||| |||||||||||||||||||||||   |||||||||||
seq2  TTAAGATTAATATTGCACTCCGTGTTTAGTAACGCTTGTTCTGAAAGTTG  950

seq1  CATGGGG-TCCTGACC-TTGTCT--CTTCAGAG-CCTTCTTTCATA-TGC  992
      ||||||| |||||||| ||||||   ||||||| |||||||||||| |||
seq2  CATGGGGTTCCTGACCTTTGTCTTCTTTCAGAGCCCTTCTTTCATATTGC  1000

seq1  TTTTCAATTTC-TCCTGGAATTCCAACTCAAA----TCTCTAACTACTGA  1037
      |||||| |||| ||||||| ||||||||| ||    ||||||||||||||
seq2  TTTTCATTTTCTTCCTGGATTTCCAACTCCAAATTCTCTCTAACTACTGA  1050

seq1  ACCCTAACTC-ACCACAAACTCATTTGGATCTCTTCT-----GTGGCCCT  1081
       || ||  || ||||| ||||||||||||| ||||||      ||||| |
seq2  CCCTTACTTCAACCAC-AACTCATTTGGAT-TCTTCTTTCTGTTGGCCTT  1098

seq1  AAACCCCAA-GATACTA-TCTTA-TTTTATA-TCTACTGGCTG-TCAGAC  1126
      ||||||||| ||||||| ||||| ||||||| ||||||| ||| ||||||
seq2  AAACCCCAAGGATACTATTCTTATTTTTATATTCTACTGCCTGTTCAGAC  1148

seq1  -TTACCAAATAGTGCTTAAACTGCTTCAGCTAAACACTGAA-TTGATTTT  1174
       |||| | ||  ||||  |||||||||||||  |||||||| ||||  ||
seq2  TTTACGAGAT--TGCT--AACTGCTTCAGCTTCACACTGAACTTGA-CTT  1193

seq1  TTTTCAGAC  1183
      |||||||||
seq2  TTTTCAGAC  1202

seq1: chr2_130561678_130562527
seq2: B6Ng01-201C22.g_68_921 (reverse)

seq1  CACACACAGAGACACACAGAGAGACAGAGACAGAGACA-GGAGAT-ACAC  48
      ||||||||||||||| |||||||||||||||||||||| |||||| ||||
seq2  CACACACAGAGACACTCAGAGAGACAGAGACAGAGACAGGGAGATAACAC  50

seq1  ATTTACTCTGATAAG-AACGGTACTTACTAGGAACTTAGGACCTAAGTTA  97
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTTACTCTGATAAGAAACGGTACTTACTAGGAACTTAGGACCTAAGTTA  100

seq1  G-AAAGCAGAAACTCCCTGCTCAACAATACCCTGCACATTTTCACTGTGG  146
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGAAACTCCCTGCTCAACAATACCCTGCACATTTTCACTGTGG  150

seq1  GTCTCATGAAAGTCTTCTGGGGTAGTTACTGGCAAACGGGTATGGTGTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGAAAGTCTTCTGGGGTAGTTACTGGCAAACGGGTATGGTGTTT  200

seq1  ACAGACTATGCAGGTGCTAGGTCTACAATTCCAGAAGAGGGAGGAGTAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTATGCAGGTGCTAGGTCTACAATTCCAGAAGAGGGAGGAGTAGA  250

seq1  ACTGATGAGGCTTTGGTGTCTAGATGGCAAGGCTAAACAGTACTATCACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGAGGCTTTGGTGTCTAGATGGCAAGGCTAAACAGTACTATCACT  300

seq1  CTAAGATTACTAGAGAACCTTTACCAGACCCCCTAATTCCTCACCTCTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTACTAGAGAACCTTTACCAGACCCCCTAATTCCTCACCTCTTG  350

seq1  GTGATACTACAATATGGAAGCTAACATAGAAACATGTAGCTATCAGTTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACTACAATATGGAAGCTAACATAGAAACATGTAGCTATCAGTTAC  400

seq1  CCTTAGCCACAATATGGCAACAGCATCCTGGTCTTTCTGAGGAATGTCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCCACAATATGGCAACAGCATCCTGGTCTTTCTGAGGAATGTCCA  450

seq1  TAGCATTAGGGCACACAGAAAGTAACAACAATGACGAAGTCCCCATCCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTAGGGCACACAGAAAGTAACAACAATGACGAAGTCCCCATCCTC  500

seq1  ACTTCTGTTCCCAGGTCTCCAACACTCACCCTTGTAGTACCACCAGCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTTCCCAGGTCTCCAACACTCACCCTTGTAGTACCACCAGCAGC  550

seq1  CTGGTCTTCTTGCGGATGTAAGCTGACTGGCGGGCAGAACGGTTCTGTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTCTTGCGGATGTAAGCTGACTGGCGGGCAGAACGGTTCTGTTG  600

seq1  GGCCTCCAGGGCACTGGAAAGGTATTTTTGGAAGTGGGCAGCATGGAAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGGGCACTGGAAAGGTATTTTTGGAAGTGGGCAGCATGGAAAC  650

seq1  ATTCAGAGCTGTCCATGATTTGCCGGTATACCATCCATCTGGAAGCAGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGCTGTCCATGATTTGCCGGTATACCATCCATCTGGAAGCAGCA  700

seq1  AAGGTAATCTAAGCATAAGGCTACATATGGCCCGGTCCTGAGAAGCCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAATCTAAGCATAAGGCTACATATGGCCCGGTCCTGAGAAGCCCTG  750

seq1  TCACAGATGTAAATGTAACCCGTAGTCTCAAAGACATGCTGCCAATGACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATGTAAATGTAACCCGTAGTCTCAAAGACATGCTGCCAATGACT  800

seq1  ATGGAGAGAGCTACTGTGGGACCACAGAAAAACAGAGAGGGAAGGCAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAGCTACTGTGGGACCACAGAAAAACAGAGAGGGAAGGCAAGA  850

seq1  ATTC  850
      ||||
seq2  ATTC  854