BAC Information

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BAC

Clone NameB6Ng01-201L08
Chromosome2 (Build37)
Map Location 107,068,991 - 107,209,863
singlet/doubletdoublet
Overlap geneKcna4
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201L08.bB6Ng01-201L08.g
ACCGA022404GA022405
length1,0531,104
definitionB6Ng01-201L08.b B6Ng01-201L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,208,798 - 107,209,863)(107,068,991 - 107,070,091)
sequence
gaattctagactaaacagatctgcatagtgaaacaatgactccaagaaaa
tgcaaacaagaaagaagaaagaagaatgaaaaaaagaaaaagaaaagaag
gaaggaaggaaggaaggaaggaaaaaaggaaagaaggaagaaaaatgaag
taggagtaaagaaaagacaattaaaggaaagtaatgattttttaaaaagg
aataaaaaagaaatgtccttgaacttgactgttgcagaacacatgcagca
catgactgtcataattttgtatacagttaataaatacttcgtattatata
ttatataaaacagattatatattgtataaaatagttggaaacattggttt
tagaacaatcactaaaatactattacacatgtcatttggaaaaataggga
ttcaaccctagtcatttggctctataccttatacacacaagcctagaaag
taattaacaggcagagatatccctctggtatacctaaggttttttgcatt
tgtagactagaagaaaataatatgtgaaacttagatctccctagacttta
tttgtctgagatgtactcccatgactcctggaatgtacttttgtaagtga
cttaactgttagcttgtctctgtgctgaggttttgatcttgttaactagc
atcttatcatctcctctgttctagttttctttctattgttgtgataaata
ccatgaccaaaagcaaactggaagaggaaagggtttatttcggtctgttt
gtccagcttacaggccatcattaaggaaaatcagagtgggaactcaagca
gaaactgatgcagagaccacaacagaatctgattactgctgagctagccc
ttctaaacagccagaccccttgtctagggatggtaccatccacaatgggc
taagccctccaacaaaaactaacagtcaagacaatggcccacaaatatgc
ccacagaccaggtatgatcaagcaattctcaactggggttcttcttccca
aagactttagtttgttgtcaaattggagaacaaacaaacaaacaaaaaca
aaa

gaattcattttttaacaggcattgcttttaattaggaacagagcctggac
aggtgcttagaagtttggacactccaaagaatgtataatttaaagaagaa
aagaaatatcaactcacttgaaaaatgtgtgattttccctgatgctaaga
aaaaaacacaaccccaaaataaaaaaacaaaaaacaaacaaaaaaaaacc
tagctggtatctgaagggaccatgtcctaacagtgctctcagttctgttt
ctctccatctaataaaggaattctccatggaggcctgtttgcaaagtcag
tcagacattaatgaggtacaaacctggcagtgggcgcccatcactgtgct
attgctattttttagtccagtttcttttccttcagagaaactgggccttg
ttggattttcatgaaatgtttcatggtttttgcaaaaacataaagatcaa
cccaagacttttataatctttgcttgtcttaaaagaatatatatatatat
aaagtttctcttaccccaagttctccagacatcattctctttgactagtt
accatttctgcatagagaaggttataagccaggagaaatccacatcagga
ctaaggcaggaaccaaactgaagttgtagagaagaaactgaaattcaggc
tctattcacattgaccaaatttagaggaaaatactcttcatagctcccct
acgtaatgactttagatagatctgtgactgtctacgtattgatttctatt
tcaatgctcactcaatagctcattttcctcggaataaacagccaatttgc
ataagaaattatgataagaacaaattcactctctggggcgttttgagctt
ttattgaaaaacatttagcgctctctctttttttctttctttctttcctt
cttttaatgctccaatattgcataatagtgctaacatgacaggaaagaga
tttaagttttacacttaagaagattcacctgttagtagagctgatgcagc
atagtggtgttgagattgtttaacagcatacctttagcagcagttcagag
ccattcagaaaataaattttctgatgcaaagtacatctgagtaatttacc
ttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_107208798_107209863
seq2: B6Ng01-201L08.b_45_1097 (reverse)

seq1  TTTTGTTTTTGGTTTTTTGTTTTGTTTGTTTTGTTTCTCCAATTTGAC-A  49
      |||||||||||         |||||||||||   |||||||||||||| |
seq2  TTTTGTTTTTG---------TTTGTTTGTTT--GTTCTCCAATTTGACAA  39

seq1  CAAACTAAAGTCCTTTGGGAAGAAGGAACCCCAGTTGAAGAATTGCCTTG  99
      ||||||||||| |||||||||||| |||||||||||| ||||||| ||||
seq2  CAAACTAAAGT-CTTTGGGAAGAA-GAACCCCAGTTG-AGAATTG-CTTG  85

seq1  ATCATA-CTGGTCTGTGGGCATATTTGTGGGCCATTGTCTTGACTGTTAG  148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACCTGGTCTGTGGGCATATTTGTGGGCCATTGTCTTGACTGTTAG  135

seq1  TTTTTGTTGGAGGGCTTAGCCCATTGTGGATGGTACCATCCCTAGACAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGGAGGGCTTAGCCCATTGTGGATGGTACCATCCCTAGACAAG  185

seq1  GGGTCTGGCTGTTTAGAAGGGCTAGCTCAGCAGTAATCAGATTCTGTTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGCTGTTTAGAAGGGCTAGCTCAGCAGTAATCAGATTCTGTTGT  235

seq1  GGTCTCTGCATCAGTTTCTGCTTGAGTTCCCACTCTGATTTTCCTTAATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGCATCAGTTTCTGCTTGAGTTCCCACTCTGATTTTCCTTAATG  285

seq1  ATGGCCTGTAAGCTGGACAAACAGACCGAAATAAACCCTTTCCTCTTCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGTAAGCTGGACAAACAGACCGAAATAAACCCTTTCCTCTTCCA  335

seq1  GTTTGCTTTTGGTCATGGTATTTATCACAACAATAGAAAGAAAACTAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTTGGTCATGGTATTTATCACAACAATAGAAAGAAAACTAGAA  385

seq1  CAGAGGAGATGATAAGATGCTAGTTAACAAGATCAAAACCTCAGCACAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGATGATAAGATGCTAGTTAACAAGATCAAAACCTCAGCACAGA  435

seq1  GACAAGCTAACAGTTAAGTCACTTACAAAAGTACATTCCAGGAGTCATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCTAACAGTTAAGTCACTTACAAAAGTACATTCCAGGAGTCATGG  485

seq1  GAGTACATCTCAGACAAATAAAGTCTAGGGAGATCTAAGTTTCACATATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACATCTCAGACAAATAAAGTCTAGGGAGATCTAAGTTTCACATATT  535

seq1  ATTTTCTTCTAGTCTACAAATGCAAAAAACCTTAGGTATACCAGAGGGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCTAGTCTACAAATGCAAAAAACCTTAGGTATACCAGAGGGAT  585

seq1  ATCTCTGCCTGTTAATTACTTTCTAGGCTTGTGTGTATAAGGTATAGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCCTGTTAATTACTTTCTAGGCTTGTGTGTATAAGGTATAGAGC  635

seq1  CAAATGACTAGGGTTGAATCCCTATTTTTCCAAATGACATGTGTAATAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGACTAGGGTTGAATCCCTATTTTTCCAAATGACATGTGTAATAGT  685

seq1  ATTTTAGTGATTGTTCTAAAACCAATGTTTCCAACTATTTTATACAATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGATTGTTCTAAAACCAATGTTTCCAACTATTTTATACAATAT  735

seq1  ATAATCTGTTTTATATAATATATAATACGAAGTATTTATTAACTGTATAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGTTTTATATAATATATAATACGAAGTATTTATTAACTGTATAC  785

seq1  AAAATTATGACAGTCATGTGCTGCATGTGTTCTGCAACAGTCAAGTTCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATGACAGTCATGTGCTGCATGTGTTCTGCAACAGTCAAGTTCAA  835

seq1  GGACATTTCTTTTTTATTCCTTTTTAAAAAATCATTACTTTCCTTTAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTCTTTTTTATTCCTTTTTAAAAAATCATTACTTTCCTTTAATT  885

seq1  GTCTTTTCTTTACTCCTACTTCATTTTTCTTCCTTCTTTCCTTTTTTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTTTACTCCTACTTCATTTTTCTTCCTTCTTTCCTTTTTTCCT  935

seq1  TCCTTCCTTCCTTCCTTCCTTCTTTTCTTTTTCTTTTTTTCATTCTTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCTTTTCTTTTTCTTTTTTTCATTCTTCTT  985

seq1  TCTTCTTTCTTGTTTGCATTTTCTTGGAGTCATTGTTTCACTATGCAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCTTGTTTGCATTTTCTTGGAGTCATTGTTTCACTATGCAGAT  1035

seq1  CTGTTTAGTCTAGAATTC  1066
      ||||||||||||||||||
seq2  CTGTTTAGTCTAGAATTC  1053


seq1: chr2_107068991_107070091
seq2: B6Ng01-201L08.g_68_1171

seq1  GAATTCATTTTTTAACAGGCATTGCTTTTAATTAGGAACAGAGCCTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTTAACAGGCATTGCTTTTAATTAGGAACAGAGCCTGGAC  50

seq1  AGGTGCTTAGAAGTTTGGACACTCCAAAGAATGTATAATTTAAAGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTAGAAGTTTGGACACTCCAAAGAATGTATAATTTAAAGAAGAA  100

seq1  AAGAAATATCAACTCACTTGAAAAATGTGTGATTTTCCCTGATGCTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATCAACTCACTTGAAAAATGTGTGATTTTCCCTGATGCTAAGA  150

seq1  AAAAAACACAACCCCAAAATAAAAAAACAAAAAACAAACAAAAAAAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACAACCCCAAAATAAAAAAACAAAAAACAAACAAAAAAAAACC  200

seq1  TAGCTGGTATCTGAAGGGACCATGTCCTAACAGTGCTCTCAGTTCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTATCTGAAGGGACCATGTCCTAACAGTGCTCTCAGTTCTGTTT  250

seq1  CTCTCCATCTAATAAAGGAATTCTCCATGGAGGCCTGTTTGCAAAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATCTAATAAAGGAATTCTCCATGGAGGCCTGTTTGCAAAGTCAG  300

seq1  TCAGACATTAATGAGGTACAAACCTGGCAGTGGGCGCCCATCACTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATTAATGAGGTACAAACCTGGCAGTGGGCGCCCATCACTGTGCT  350

seq1  ATTGCTATTTTTTAGTCCAGTTTCTTTTCCTTCAGAGAAACTGGGCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATTTTTTAGTCCAGTTTCTTTTCCTTCAGAGAAACTGGGCCTTG  400

seq1  TTGGATTTTCATGAAATGTTTCATGGTTTTTGCAAAAACATAAAGATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTTCATGAAATGTTTCATGGTTTTTGCAAAAACATAAAGATCAA  450

seq1  CCCAAGACTTTTATAATCTTTGCTTGTCTTAAAAGAATATATATATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACTTTTATAATCTTTGCTTGTCTTAAAAGAATATATATATATAT  500

seq1  AAAGTTTCTCTTACCCCAAGTTCTCCAGACATCATTCTCTTTGACTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCTCTTACCCCAAGTTCTCCAGACATCATTCTCTTTGACTAGTT  550

seq1  ACCATTTCTGCATAGAGAAGGTTATAAGCCAGGAGAAATCCACATCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTGCATAGAGAAGGTTATAAGCCAGGAGAAATCCACATCAGGA  600

seq1  CTAAGGCAGGAACCAAACTGAAGTTGTAGAGAAGAAACTGAAATTCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCAGGAACCAAACTGAAGTTGTAGAGAAGAAACTGAAATTCAGGC  650

seq1  TCTATTCACATTGACCAAATTTAGAGGAAAATACTCTTCATAGCTCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCACATTGACCAAATTTAGAGGAAAATACTCTTCATAGCTCCCCT  700

seq1  ACGTAATGACTTTAGATAGATCTGTGACTGTCTACGTATTGATTTCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATGACTTTAGATAGATCTGTGACTGTCTACGTATTGATTTCTATT  750

seq1  TCAATGCTCACTCAATAGCTCATTTTCCTCGGAATAAACAGCCAATTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTCACTCAATAGCTCATTTTCCTCGGAATAAACAGCCAATTTGC  800

seq1  ATAAGAAATTATGATAAGAACAAATTCACTCTCTGGGGCGTTTTGAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAATTATGATAAGAACAAATTCACTCTCTGGGGCGTTTTGAGCTT  850

seq1  TTATTGAAAAACA-TTAGCGCTCTCTC-TTTTTTCTTTCTTTCTTTCCT-  897
      ||||||||||||| ||||||||||||| ||||||||||||||||||||| 
seq2  TTATTGAAAAACATTTAGCGCTCTCTCTTTTTTTCTTTCTTTCTTTCCTT  900

seq1  -CTTTAATGCTCC-ATATTGCATAATAGTGCTAACATGACAGGAAAGAGA  945
        ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATGCTCCAATATTGCATAATAGTGCTAACATGACAGGAAAGAGA  950

seq1  TTTAAGTTTTACACTTAAG-AGATTCA-CTG-TAGTAGAGGCTGATGCAG  992
      ||||||||||||||||||| ||||||| ||| ||||||| ||||||||||
seq2  TTTAAGTTTTACACTTAAGAAGATTCACCTGTTAGTAGA-GCTGATGCAG  999

seq1  CATAGT-GTGTTGAGAATTGTTTAACAGCATA-CTTTAGCAGCAGTTCAG  1040
      |||||| |||||||| |||||||||||||||| |||||||||||||||||
seq2  CATAGTGGTGTTGAG-ATTGTTTAACAGCATACCTTTAGCAGCAGTTCAG  1048

seq1  AGCAATCCAGAAAATAAATTTTCTGATGCAAAAAGGTACA-CTGAAGTAA  1089
      ||| || |||||||||||||||||||||||||   ||||| ||| |||  
seq2  AGCCATTCAGAAAATAAATTTTCTGATGCAAA---GTACATCTG-AGT--  1092

seq1  AATTACCCTTAG  1101
      ||||  ||||||
seq2  AATTTACCTTAG  1104


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