BAC Information

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BAC

Clone NameB6Ng01-201N24
Chromosome2 (Build37)
Map Location 116,497,516 - 116,642,534
singlet/doubletdoublet
Overlap genenone
Upstream geneBC052040, Mrg1, G630016G05Rik, 2810405F15Rik, LOC433464
Downstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201N24.bB6Ng01-201N24.g
ACCGA022527GA022528
length1,0931,128
definitionB6Ng01-201N24.b B6Ng01-201N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,641,424 - 116,642,534)(116,497,516 - 116,498,661)
sequence
gaattccaggagacagcttatcctactgtagtattgttcagtggtgatgg
aaggattccccaggagggggatgcctgtaggtcttcatcagcatcctcac
agaaggagtgttctagccacaaatgatggagaggcttaaattgcacttct
tagtgtaattctgtgaatttctttttaatgcatgtctctttcacaaaaga
tgaagctataacagtggcatgaaagtctgcactgcctgagcaccatgtgt
ctccaacatatagcccatttttaaaaaaaacctaatcgagaacatttctg
ttacttataagaatcagattttctagtcccccccttgtaatatattattt
aaacacttgaggctgtgacttggattttgactttgttctgatctcacgga
acagttttattcttagaacaacagaagtaaaaatcagattgattatcact
ctatgtatttttttaaaataaaaaacctttataacaataaatagaccaac
caaaaatgacaaatagaaaagcataactatacgcgatcccagtaaatgtt
tgagaacccaagtagattgttagaaagcaacctgtgttctcggtgttatt
ccctgaattctctcagttatttcatgtcttagaaatttgatgccctatat
aagtgcattttttttcttaaggtagaaattttgcttctcccagtagccta
ctgtagtgttagaaatgtttatgaagacaactggtgacctcgattgatac
ctttagtgattacatcaaattaaagataaccctttccccccaaagcaagt
cccataaataaacatgaattcacaaaaagctggctgaagtcccaactttt
aataggctcacattcttctctatgctttaggtttaaggaacaatgtctgc
agacgctgtggtttgacacatcaggtggctcagcttttctttatgaaact
ttatcccagatttttagcctagaaaagctttagcatgcatgagaaaaaaa
aaacctagaatcaacactacagaaatgacagcacttatattatatattgt
ctttcaagggcttaatttgcctcttcatatgagaagtctacta

gaattctcatcttcagtctcggagcatgatttgctaagttatcccatgta
aatgtggagtggggtacttggcaggtttgtctctctgtctctctccctct
ttttttctcaactctcaaaccagttttattaactgaaagaagagaccttg
atgtgtctctagaattttttttccttctttctaggaacttaagtctccct
tccataaattaatgggttcctttatggtgtgaacaattctctacttaaat
tgagattgccatgctattccttcacaaatacccattaatttcaaccaccg
gtgagaggaaagaaagcatttaaaaatgtaagcaagtgcaactatgaaac
ggtccctaagtggagaggcaaatgaagcctgctttcaagatgaaagtggc
ttgtttggtacggggctgaatagatttagttcaggtaaccacttcagctt
gactgatagagttgttgtttcagtgcttggccaaatagccttttatgatg
caatcaagtaatagatacaagattgacaaggaacaatgagaaagagcctt
ctatcaacactgactaagatccattattgtggtgtgtacactgtgctgga
gacctgtaaacacatcttcattgatcccacagagagatagaaatatctcc
ccttgtatggttcaatcaagtccttttcacaaaggtaaagtgcaaacaat
attgaagaaggagaaagacaccagcattacagtcaaacagtaaataatgg
ttgggcttgggaaacctatttataacatttcaaattcctgtcagttcaaa
tgaaatggatacctctctattgcagcctcagagaccagaatgggggggag
ggctgtgcattcctcttattgtccccccttttaccaactgaccaatcaat
aagaaaaaaaatctcatttttcacagttttgcatttttcatagatatctt
agtagaccatgtctctgaaaaaaatcttcatccatgaaggtcaacactcc
cttctttcccttgcccaccatcaggatcactaccataattgacacatctg
tgactacaactagcaaaaggagttaacatgtcgttgaagcgtccctggtt
ctgggtcatgagctataggcttactctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_116641424_116642534
seq2: B6Ng01-201N24.b_47_1139 (reverse)

seq1  TAGTAGACTCTCTCATATTTGTATAGAGGCAAAATTAAAAGCCCCTTTGA  50
      ||||||||| |||||||    |  ||||||||| |   ||||||  ||||
seq2  TAGTAGACT-TCTCATA----TGAAGAGGCAAATT---AAGCCC--TTGA  40

seq1  AAGGAACAATATATAATAT-AGTGCTGTCATTTTCCTGTAGTGTTTGATT  99
      |||  |||||||||||||| |||||||||||||  |||||||| |||| |
seq2  AAG--ACAATATATAATATAAGTGCTGTCATTT--CTGTAGTG-TTGA-T  84

seq1  TCTAGGTTTTTTTTTTCTTCATGCATGCTAAAGCTTTTCTAGGCTAAAAA  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTAGGTTTTTTTTTTC-TCATGCATGCTAAAGCTTTTCTAGGCTAAAAA  133

seq1  TTCTGGGATAAAGTTTCAATAAAGAAAAGCTGAGCCACCCTGATGTGTC-  198
       |||||||||||||||| ||||||||||||||||||| ||||||||||| 
seq2  -TCTGGGATAAAGTTTC-ATAAAGAAAAGCTGAGCCA-CCTGATGTGTCA  180

seq1  AACCACAGCGTCTGCAGACATTGTTCCTTAAACCTAAAGCATAGAGAAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGCGTCTGCAGACATTGTTCCTTAAACCTAAAGCATAGAGAAGA  230

seq1  ATGTGAGCCTATTAAAAGTTGGGACTTCAGCCAGCTTTTTGTGAATTCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCCTATTAAAAGTTGGGACTTCAGCCAGCTTTTTGTGAATTCAT  280

seq1  GTTTATTTATGGGACTTGCTTTGGGGGGAAAGGGTTATCTTTAATTTGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTATGGGACTTGCTTTGGGGGGAAAGGGTTATCTTTAATTTGAT  330

seq1  GTAATCACTAAAGGTATCAATCGAGGTCACCAGTTGTCTTCATAAACATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCACTAAAGGTATCAATCGAGGTCACCAGTTGTCTTCATAAACATT  380

seq1  TCTAACACTACAGTAGGCTACTGGGAGAAGCAAAATTTCTACCTTAAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACTACAGTAGGCTACTGGGAGAAGCAAAATTTCTACCTTAAGAA  430

seq1  AAAAAATGCACTTATATAGGGCATCAAATTTCTAAGACATGAAATAACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGCACTTATATAGGGCATCAAATTTCTAAGACATGAAATAACTG  480

seq1  AGAGAATTCAGGGAATAACACCGAGAACACAGGTTGCTTTCTAACAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTCAGGGAATAACACCGAGAACACAGGTTGCTTTCTAACAATCT  530

seq1  ACTTGGGTTCTCAAACATTTACTGGGATCGCGTATAGTTATGCTTTTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGTTCTCAAACATTTACTGGGATCGCGTATAGTTATGCTTTTCTA  580

seq1  TTTGTCATTTTTGGTTGGTCTATTTATTGTTATAAAGGTTTTTTATTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTTTTGGTTGGTCTATTTATTGTTATAAAGGTTTTTTATTTTA  630

seq1  AAAAAATACATAGAGTGATAATCAATCTGATTTTTACTTCTGTTGTTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACATAGAGTGATAATCAATCTGATTTTTACTTCTGTTGTTCTA  680

seq1  AGAATAAAACTGTTCCGTGAGATCAGAACAAAGTCAAAATCCAAGTCACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAACTGTTCCGTGAGATCAGAACAAAGTCAAAATCCAAGTCACA  730

seq1  GCCTCAAGTGTTTAAATAATATATTACAAGGGGGGGACTAGAAAATCTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAGTGTTTAAATAATATATTACAAGGGGGGGACTAGAAAATCTGA  780

seq1  TTCTTATAAGTAACAGAAATGTTCTCGATTAGGTTTTTTTTAAAAATGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAAGTAACAGAAATGTTCTCGATTAGGTTTTTTTTAAAAATGGG  830

seq1  CTATATGTTGGAGACACATGGTGCTCAGGCAGTGCAGACTTTCATGCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTGGAGACACATGGTGCTCAGGCAGTGCAGACTTTCATGCCAC  880

seq1  TGTTATAGCTTCATCTTTTGTGAAAGAGACATGCATTAAAAAGAAATTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAGCTTCATCTTTTGTGAAAGAGACATGCATTAAAAAGAAATTCA  930

seq1  CAGAATTACACTAAGAAGTGCAATTTAAGCCTCTCCATCATTTGTGGCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTACACTAAGAAGTGCAATTTAAGCCTCTCCATCATTTGTGGCTA  980

seq1  GAACACTCCTTCTGTGAGGATGCTGATGAAGACCTACAGGCATCCCCCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTCCTTCTGTGAGGATGCTGATGAAGACCTACAGGCATCCCCCTC  1030

seq1  CTGGGGAATCCTTCCATCACCACTGAACAATACTACAGTAGGATAAGCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAATCCTTCCATCACCACTGAACAATACTACAGTAGGATAAGCTG  1080

seq1  TCTCCTGGAATTC  1111
      |||||||||||||
seq2  TCTCCTGGAATTC  1093


seq1: chr2_116497516_116498661
seq2: B6Ng01-201N24.g_65_1192

seq1  GAATTCTCATCTTCAGTCTCGGAGCATGATTTGCTAAGTTATCCCATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCTTCAGTCTCGGAGCATGATTTGCTAAGTTATCCCATGTA  50

seq1  AATGTGGAGTGGGGTACTTGGCAGGTTTGTCTCTCTGTCTCTCTCCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGAGTGGGGTACTTGGCAGGTTTGTCTCTCTGTCTCTCTCCCTCT  100

seq1  TTTTTTCTCAACTCTCAAACCAGTTTTATTAACTGAAAGAAGAGACCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCAACTCTCAAACCAGTTTTATTAACTGAAAGAAGAGACCTTG  150

seq1  ATGTGTCTCTAGAATTTTTTTTCCTTCTTTCTAGGAACTTAAGTCTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTCTAGAATTTTTTTTCCTTCTTTCTAGGAACTTAAGTCTCCCT  200

seq1  TCCATAAATTAATGGGTTCCTTTATGGTGTGAACAATTCTCTACTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAATTAATGGGTTCCTTTATGGTGTGAACAATTCTCTACTTAAAT  250

seq1  TGAGATTGCCATGCTATTCCTTCACAAATACCCATTAATTTCAACCACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGCCATGCTATTCCTTCACAAATACCCATTAATTTCAACCACCG  300

seq1  GTGAGAGGAAAGAAAGCATTTAAAAATGTAAGCAAGTGCAACTATGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGAAAGAAAGCATTTAAAAATGTAAGCAAGTGCAACTATGAAAC  350

seq1  GGTCCCTAAGTGGAGAGGCAAATGAAGCCTGCTTTCAAGATGAAAGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTAAGTGGAGAGGCAAATGAAGCCTGCTTTCAAGATGAAAGTGGC  400

seq1  TTGTTTGGTACGGGGCTGAATAGATTTAGTTCAGGTAACCACTTCAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGTACGGGGCTGAATAGATTTAGTTCAGGTAACCACTTCAGCTT  450

seq1  GACTGATAGAGTTGTTGTTTCAGTGCTTGGCCAAATAGCCTTTTATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATAGAGTTGTTGTTTCAGTGCTTGGCCAAATAGCCTTTTATGATG  500

seq1  CAATCAAGTAATAGATACAAGATTGACAAGGAACAATGAGAAAGAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGTAATAGATACAAGATTGACAAGGAACAATGAGAAAGAGCCTT  550

seq1  CTATCAACACTGACTAAGATCCATTATTGTGGTGTGTACACTGTGCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACACTGACTAAGATCCATTATTGTGGTGTGTACACTGTGCTGGA  600

seq1  GACCTGTAAACACATCTTCATTGATCCCACAGAGAGATAGAAATATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTAAACACATCTTCATTGATCCCACAGAGAGATAGAAATATCTCC  650

seq1  CCTTGTATGGTTCAATCAAGTCCTTTTCACAAAGGTAAAGTGCAAACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATGGTTCAATCAAGTCCTTTTCACAAAGGTAAAGTGCAAACAAT  700

seq1  ATTGAAGAAGGAGAAAGACACCAGCATTACAGTCAAACAGTAAATAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAAGGAGAAAGACACCAGCATTACAGTCAAACAGTAAATAATGG  750

seq1  TTGGGCTTGGGAAACCTATTTATAACATTTCAAATTCCTGTCAGTTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTGGGAAACCTATTTATAACATTTCAAATTCCTGTCAGTTCAAA  800

seq1  TGAAATGGATAACCTCTCTATTGCAGCCTCAGAGACCAGAAT-GGGGGGA  849
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TGAAATGGAT-ACCTCTCTATTGCAGCCTCAGAGACCAGAATGGGGGGGA  849

seq1  GGGCTGTGCATTCCTCTTATTGTCCCCCCTTTTACCAACTGACCAATCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGCATTCCTCTTATTGTCCCCCCTTTTACCAACTGACCAATCAA  899

seq1  TAAAGAAAAAAAATCTCA-TTTTCACAGTTTTGCA-TTTTCATAGATATC  947
      | |||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  T-AAGAAAAAAAATCTCATTTTTCACAGTTTTGCATTTTTCATAGATATC  948

seq1  TTAGTAGA-CATGTCTCTGAAAAAAAATCTTCATCCATGAAGGTCAACAA  996
      |||||||| |||||||||| |||||||||||||||||||||||||||| |
seq2  TTAGTAGACCATGTCTCTG-AAAAAAATCTTCATCCATGAAGGTCAAC-A  996

seq1  CTCCC-TCTTCCCCTTGCCCCACCCATCAGGATCCACTACCATAAATTGA  1045
      ||||| |||| |||||||||   |||||||||| ||||||||| ||||| 
seq2  CTCCCTTCTTTCCCTTGCCC--ACCATCAGGAT-CACTACCAT-AATTG-  1041

seq1  ACACATTTTGTTGACTACAAACTAGAAAAAAAGAAGTTAACATGTGTTGG  1095
      |||||| |   ||||||| ||||||   ||||| |||||||||||  | |
seq2  ACACATCT--GTGACTAC-AACTAG--CAAAAGGAGTTAACATGTCGTTG  1086

seq1  AAGCGTCGCTGAGTTTCTGGGTCAATTTGAAGCTTTATTAGGCTTACTCT  1145
      ||||||| ||  | ||||||||||   || ||||    ||||||||||||
seq2  AAGCGTCCCT--GGTTCTGGGTCA---TG-AGCT---ATAGGCTTACTCT  1127

seq1  T  1146
      |
seq2  T  1128


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