BAC Information

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BAC

Clone NameB6Ng01-201P07
Chromosome2 (Build37)
Map Location 164,100,260 - 164,257,934
singlet/doubletdoublet
Overlap geneSvs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4
Upstream geneLOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b
Downstream gene2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201P07.bB6Ng01-201P07.g
ACCGA022583GA022584
length978613
definitionB6Ng01-201P07.b B6Ng01-201P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,100,260 - 164,101,232)(164,257,324 - 164,257,934)
sequence
gaattccaaaattataaaactcttttccaaaccctcattgcattaaaatg
gaaactaccactcatttttaatcaatacattctcctaatatgttcaattc
tgaacaaaagtctcctccatttattaactgtgccccctagagaagtcata
tactcttagggcacacctacagcaagtgcaagacaggagcagccattcta
atgggaaatattagaggaacgtgtgtgctcatgatctccaacatgtctag
atctcaaacttctgctctgaagttgtgaaaaaagtctttccttcagggct
ctgtttgcccaatgcatcaaggtattgacccaagcattggggtagaggcc
caatcctcttacctaacagcagagaaagatttgatttatgtaataaaaag
atgagtagactctctagtgcgaaggaggcatggttttggtaactgtgcac
aagccttgttcacacagaaccaagggcaggtcagttgccattttcttcca
ctcaaaatcactcttctctttccaccagggtcaaattcattctggattag
gaacctttgtcagtgcagtttgtctgcagaatcacagaagtgtcctgacc
ttgttctgttctgactactatctcaatgtgagctttgaggttgctataat
gatattacatccacggagaccctggagctttaattttggagaaagtaaag
atagatctggttgacaataggtatgttgcagatatggaacaggaaactaa
ctcctcatccacagggtttgtttgtttgttgtttgtttgtttgtttgtgt
gactgttttcttcatcatggcgatgtctgcttctaggcgcatttccttcc
tggagccctcctgtaaatattgatcactaagagctgaatgggcattaggg
tttgtacattgatgctatccctgctcaacattatagctgctccatcaagt
gcgtccgttactaatggaattgttaagc
gaattctctttacaaaattctgtgaaagaacagggcctccctgggtctga
ctggctagttcctattctgaatttctaagcagggcttcatcctttgtact
cttggggactattggagggaaggcctggaaatagtagaccagtgaccctt
gcacctggttgtttacaagaacgagcccgagtccaaagactaggggaagg
gctgtgggcaccccagtacaccctaggtccctaaggaagctgggatagga
gacacggggtgtgtgtgggagggggcaaaaataagtggcgatcgaggagg
ggctttgtggatagtttccttttaaatgctgtttggtgggaattgaccac
aggctctggggtggctagctgggtctccttgggatgggagctgagtgatg
tggtctgtgggagcaaggatctgtgtgccctgccccgagctggcagaaga
ctagacattgagagaatttgagtccgtgaattcaggagtgcgcctttgag
tcaccacccggtctgagttctgtggctgtcttggggtgtgagtgaacctg
cccagcctgtttcagcccagtctgactcagttgggaacatgttcccaaaa
agggcaggtccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164100260_164101232
seq2: B6Ng01-201P07.b_41_1018

seq1  GAATTCCAAAATTATAAAACTCTTTTCCAAACCCTCATTGCATTAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATTATAAAACTCTTTTCCAAACCCTCATTGCATTAAAATG  50

seq1  GAAACTACCACTCATTTTTAATCAATACATTCTCCTAATATGTTCAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTACCACTCATTTTTAATCAATACATTCTCCTAATATGTTCAATTC  100

seq1  TGAACAAAAGTCTCCTCCATTTATTAACTGTGCCCCCTAGAGAAGTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAAGTCTCCTCCATTTATTAACTGTGCCCCCTAGAGAAGTCATA  150

seq1  TACTCTTAGGGCACACCTACAGCAAGTGCAAGACAGGAGCAGCCATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTAGGGCACACCTACAGCAAGTGCAAGACAGGAGCAGCCATTCTA  200

seq1  ATGGGAAATATTAGAGGAACGTGTGTGCTCATGATCTCCAACATGTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAATATTAGAGGAACGTGTGTGCTCATGATCTCCAACATGTCTAG  250

seq1  ATCTCAAACTTCTGCTCTGAAGTTGTGAAAAAAGTCTTTCCTTCAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAACTTCTGCTCTGAAGTTGTGAAAAAAGTCTTTCCTTCAGGGCT  300

seq1  CTGTTTGCCCAATGCATCAAGGTATTGACCCAAGCATTGGGGTAGAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCCCAATGCATCAAGGTATTGACCCAAGCATTGGGGTAGAGGCC  350

seq1  CAATCCTCTTACCTAACAGCAGAGAAAGATTTGATTTATGTAATAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCTTACCTAACAGCAGAGAAAGATTTGATTTATGTAATAAAAAG  400

seq1  ATGAGTAGACTCTCTAGTGCGAAGGAGGCATGGTTTTGGTAACTGTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAGACTCTCTAGTGCGAAGGAGGCATGGTTTTGGTAACTGTGCAC  450

seq1  AAGCCTTGTTCACACAGAACCAAGGGCAGGTCAGTTGCCATTTTCTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGTTCACACAGAACCAAGGGCAGGTCAGTTGCCATTTTCTTCCA  500

seq1  CTCAAAATCACTCTTCTCTTTCCACCAGGGTCAAATTCATTCTGGATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATCACTCTTCTCTTTCCACCAGGGTCAAATTCATTCTGGATTAG  550

seq1  GAACCTTTGTCAGTGCAGTTTGTCTGCAGAATCACAGAAGTGTCCTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTGTCAGTGCAGTTTGTCTGCAGAATCACAGAAGTGTCCTGACC  600

seq1  TTGTTCTGTTCTGACTACTATCTCAATGTGAGCTTTGAGGTTGCTATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTTCTGACTACTATCTCAATGTGAGCTTTGAGGTTGCTATAAT  650

seq1  GATATTACATCCACGGAGACCCTGGAGCTTTAATTTTGGAGAAAGTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTACATCCACGGAGACCCTGGAGCTTTAATTTTGGAGAAAGTAAAG  700

seq1  ATAGATCTGGTTGACAATAGGTATGTTGCAGATATGGAACAGGAAACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTGGTTGACAATAGGTATGTTGCAGATATGGAACAGGAAACTAA  750

seq1  CTCCTCATCCACAGGGTTTGTTTGTTTGTTGTTTGTTTGTTTGTTTGTTT  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCCTCATCCACAGGGTTTGTTTGTTTGTTGTTTGTTTGTTTGTTTGTGT  800

seq1  GTTTGTTTTCTTCATCATGGTGATTTCTGCTTCT-GGCGCA-TTCCTTCC  848
      |  ||||||||||||||||| ||| ||||||||| |||||| ||||||||
seq2  GACTGTTTTCTTCATCATGGCGATGTCTGCTTCTAGGCGCATTTCCTTCC  850

seq1  TGGAGCCCTCCT-TAAATATTG-GCACTAAG-GCTGAATGGGCATTAGGG  895
      |||||||||||| |||||||||  ||||||| ||||||||||||||||||
seq2  TGGAGCCCTCCTGTAAATATTGATCACTAAGAGCTGAATGGGCATTAGGG  900

seq1  TTTGTACCTTGAAGCTTTCCCT-CTCGAACCATTATAGCTGCTCC-TCTA  943
      ||||||| |||| ||| ||||| |||  | ||||||||||||||| || |
seq2  TTTGTACATTGATGCTATCCCTGCTC--AACATTATAGCTGCTCCATCAA  948

seq1  GTGCGTCCCTTCCAAATGGAATTGTTAAGC  973
      |||||||| || | ||||||||||||||||
seq2  GTGCGTCCGTTACTAATGGAATTGTTAAGC  978

seq1: chr2_164257324_164257934
seq2: B6Ng01-201P07.g_66_678 (reverse)

seq1  TGGG-CCTGCCC-TGTTGGGAACATGTTCCCAACTGAGTCAGACTGGGCT  48
      |||| ||||||| | |||||||||||||||||||||||||||||||||||
seq2  TGGGACCTGCCCTTTTTGGGAACATGTTCCCAACTGAGTCAGACTGGGCT  50

seq1  GAAACAGGCTGGGCAGGTTCACTCACACCCCAAGACAGCCACAGAACTCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGCTGGGCAGGTTCACTCACACCCCAAGACAGCCACAGAACTCA  100

seq1  GACCGGGTGGTGACTCAAAGGCGCACTCCTGAATTCACGGACTCAAATTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGGTGGTGACTCAAAGGCGCACTCCTGAATTCACGGACTCAAATTC  150

seq1  TCTCAATGTCTAGTCTTCTGCCAGCTCGGGGCAGGGCACACAGATCCTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGTCTAGTCTTCTGCCAGCTCGGGGCAGGGCACACAGATCCTTG  200

seq1  CTCCCACAGACCACATCACTCAGCTCCCATCCCAAGGAGACCCAGCTAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACAGACCACATCACTCAGCTCCCATCCCAAGGAGACCCAGCTAGC  250

seq1  CACCCCAGAGCCTGTGGTCAATTCCCACCAAACAGCATTTAAAAGGAAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGAGCCTGTGGTCAATTCCCACCAAACAGCATTTAAAAGGAAAC  300

seq1  TATCCACAAAGCCCCTCCTCGATCGCCACTTATTTTTGCCCCCTCCCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACAAAGCCCCTCCTCGATCGCCACTTATTTTTGCCCCCTCCCACA  350

seq1  CACACCCCGTGTCTCCTATCCCAGCTTCCTTAGGGACCTAGGGTGTACTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCGTGTCTCCTATCCCAGCTTCCTTAGGGACCTAGGGTGTACTG  400

seq1  GGGTGCCCACAGCCCTTCCCCTAGTCTTTGGACTCGGGCTCGTTCTTGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCCACAGCCCTTCCCCTAGTCTTTGGACTCGGGCTCGTTCTTGTA  450

seq1  AACAACCAGGTGCAAGGGTCACTGGTCTACTATTTCCAGGCCTTCCCTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAGGTGCAAGGGTCACTGGTCTACTATTTCCAGGCCTTCCCTCC  500

seq1  AATAGTCCCCAAGAGTACAAAGGATGAAGCCCTGCTTAGAAATTCAGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCCCAAGAGTACAAAGGATGAAGCCCTGCTTAGAAATTCAGAAT  550

seq1  AGGAACTAGCCAGTCAGACCCAGGGAGGCCCTGTTCTTTCACAGAATTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTAGCCAGTCAGACCCAGGGAGGCCCTGTTCTTTCACAGAATTTT  600

seq1  GTAAAGAGAATTC  611
      |||||||||||||
seq2  GTAAAGAGAATTC  613