BAC Information

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BAC

Clone NameB6Ng01-201P16
Chromosome2 (Build37)
Map Location 120,776,034 - 120,884,568
singlet/doubletdoublet
Overlap geneUbr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5
Upstream geneMga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2
Downstream geneLOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201P16.bB6Ng01-201P16.g
ACCGA022601GA022602
length3181,135
definitionB6Ng01-201P16.b B6Ng01-201P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,776,034 - 120,776,351)(120,883,438 - 120,884,568)
sequence
ataagttcttagtataaaattgatgttacagaagacaaaaagaaacagac
tatgtaataccttttattcatattttcccctgtaaattctcttcattgtt
tttctgaatagcttcattatgatagtaccatgcaaaaatggctatccatt
atagctttatttcaaccaagtctcatagtcacttgaaaagtactcacagg
cacatattgataacaaacggggctggaggtgagattcagggtaaatgctt
gcctgggataggcacagtttgatcatcggaacaagacaagaaaaggaagg
agaggagaggaggggagg
gaattccttccattcccattgtcagagaaggagactagttagatgaagac
ctcgtgacagtgttatctgcaaggccaaagcagtacaatcactgtggtta
taaaagacagatgactatgtgagggaggggttgggagcaatatttttacc
tttggaaaagtaagcgcatgcagacagaaaagaaaaggtgacaaaaggtg
acagaggtcatcacatgtaagtgtaatcacttcaccgctgcagagaagtt
ttaagtgatgctctcagaagtgtgctggaatacacttcgggagttctgaa
gccccttcctaactgaaaccctatccacttttgcccaattaccattgctg
agcatacagacatgtgtgtgtgtgcacacataaataaatgtccatgtggt
ctccctttcataagagattcaggtcccacaactttgtcactgaaagagtc
tccggaatgtcacatcagatcctgagtcgccagaactgagagtctgtaag
caaccttgttcaccagctgaaggcaattaatttaacagacagcgaatgag
aatgggttttgttcacagcactgtgctaggaatgaagaaacacaagcgaa
gaatcagatggaagcctcgatttgaggttatttgtaatctggtcaaggag
ataagatagagttggtaaattacagagagcttaatctgttgctaaaatgt
gtaggcgattggaattctgttgacagtgaatgtaggaggctaacatgacc
cagagcagtcagagaaacttcaaagagaaaggcatactgagatcacaggt
ggctggggtgcccagagacatggcaagggtggagcttgtagttagagcaa
ggaagggattaagaaaacacgagccccaagtcctgccctgatgcttctct
ccttgtgatttcacctctctaagcttcagctatgtcgtcttgtgcttcat
attctatattagcaacttcttcttgccaacatggttggctcacatctata
atccagcactcagagctgagggcaggaggatagctagagaagttacttca
gcctgggatattagagtggagatttctctcaaaactcatcttctcttacc
caaccgaaaaaaaaatggaggggtgggcctgtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120776034_120776351
seq2: B6Ng01-201P16.b_52_369

seq1  ATAAGTTCTTAGTATAAAATTGATGTTACAGAAGACAAAAAGAAACAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTCTTAGTATAAAATTGATGTTACAGAAGACAAAAAGAAACAGAC  50

seq1  TATGTAATACCTTTTATTCATATTTTCCCCTGTAAATTCTCTTCATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATACCTTTTATTCATATTTTCCCCTGTAAATTCTCTTCATTGTT  100

seq1  TTTCTGAATAGCTTCATTATGATAGTACCATGCAAAAATGGCTATCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAATAGCTTCATTATGATAGTACCATGCAAAAATGGCTATCCATT  150

seq1  ATAGCTTTATTTCAACCAAGTCTCATAGTCACTTGAAAAGTACTCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTATTTCAACCAAGTCTCATAGTCACTTGAAAAGTACTCACAGG  200

seq1  CACATATTGATAACAAACGGGGCTGGAGGTGAGATTCAGGGTAAATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTGATAACAAACGGGGCTGGAGGTGAGATTCAGGGTAAATGCTT  250

seq1  GCCTGGGATAGGCACAGTTTGATCATCGGAACAAGACAAGAAAAGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGATAGGCACAGTTTGATCATCGGAACAAGACAAGAAAAGGAAGG  300

seq1  AGAGGAGAGGAGGGGAGG  318
      ||||||||||||||||||
seq2  AGAGGAGAGGAGGGGAGG  318

seq1: chr2_120883438_120884568
seq2: B6Ng01-201P16.g_62_1196 (reverse)

seq1  GCTACAGCCCCA--CCTCCTTTTTTTTTTTGGTTGGGGTAGAGAAGTTG-  47
      ||||||| ||||  ||||| ||||||||| |||||||  ||||||| || 
seq2  GCTACAGGCCCACCCCTCCATTTTTTTTTCGGTTGGGTAAGAGAAGATGA  50

seq1  GTTTTGAAGAAGAATCT-CACTCT-ATATCCCAGGCTGACCTTACTTCTC  95
      |||||| |||  ||||| |||||| ||||||||||||||  | |||||||
seq2  GTTTTG-AGAGAAATCTCCACTCTAATATCCCAGGCTGAAGTAACTTCTC  99

seq1  TAGCTATCCTCCTGCCCTCAGCCTCCTGAGTGCTGGGATTATAGATGTGA  145
      ||||||||||||||||||||||   ||||||||| |||||||||||||||
seq2  TAGCTATCCTCCTGCCCTCAGC--TCTGAGTGCT-GGATTATAGATGTGA  146

seq1  GCC-ACCATGTTGGCAAGAAG-AGTTGCTAATATAGAATATGAAGCACAA  193
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCAACCATGTTGGCAAGAAGAAGTTGCTAATATAGAATATGAAGCACAA  196

seq1  GACGACATAGCTGAAGCTTAGAGAGGTGAAATCACAAGGAGAGAAGCATC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACATAGCTGAAGCTTAGAGAGGTGAAATCACAAGGAGAGAAGCATC  246

seq1  AGGGCAGGACTT-GGGCTCGTGTTTTCTTAATCCCTTCCTTGCTCTAACT  292
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGACTTGGGGCTCGTGTTTTCTTAATCCCTTCCTTGCTCTAACT  296

seq1  ACAAGCTCCACCCTTGCCATGTCTCTGGGCACCCCAGCCACCTGTGATCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCCACCCTTGCCATGTCTCTGGGCACCCCAGCCACCTGTGATCT  346

seq1  CAGTATGCCTTTCTCTTTGAAGTTTCTCTGACTGCTCTGGGTCATGTTAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGCCTTTCTCTTTGAAGTTTCTCTGACTGCTCTGGGTCATGTTAG  396

seq1  CCTCCTACATTCACTGTCAACAGAATTCCAATCGCCTACACATTTTAGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACATTCACTGTCAACAGAATTCCAATCGCCTACACATTTTAGCA  446

seq1  ACAGATTAAGCTCTCTGTAATTTACCAACTCTATCTTATCTCCTTGACCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTAAGCTCTCTGTAATTTACCAACTCTATCTTATCTCCTTGACCA  496

seq1  GATTACAAATAACCTCAAATCGAGGCTTCCATCTGATTCTTCGCTTGTGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAAATAACCTCAAATCGAGGCTTCCATCTGATTCTTCGCTTGTGT  546

seq1  TTCTTCATTCCTAGCACAGTGCTGTGAACAAAACCCATTCTCATTCGCTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTCCTAGCACAGTGCTGTGAACAAAACCCATTCTCATTCGCTG  596

seq1  TCTGTTAAATTAATTGCCTTCAGCTGGTGAACAAGGTTGCTTACAGACTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAAATTAATTGCCTTCAGCTGGTGAACAAGGTTGCTTACAGACTC  646

seq1  TCAGTTCTGGCGACTCAGGATCTGATGTGACATTCCGGAGACTCTTTCAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTGGCGACTCAGGATCTGATGTGACATTCCGGAGACTCTTTCAG  696

seq1  TGACAAAGTTGTGGGACCTGAATCTCTTATGAAAGGGAGACCACATGGAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGTTGTGGGACCTGAATCTCTTATGAAAGGGAGACCACATGGAC  746

seq1  ATTTATTTATGTGTGCACACACACACATGTCTGTATGCTCAGCAATGGTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATGTGTGCACACACACACATGTCTGTATGCTCAGCAATGGTA  796

seq1  ATTGGGCAAAAGTGGATAGGGTTTCAGTTAGGAAGGGGCTTCAGAACTCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCAAAAGTGGATAGGGTTTCAGTTAGGAAGGGGCTTCAGAACTCC  846

seq1  CGAAGTGTATTCCAGCACACTTCTGAGAGCATCACTTAAAACTTCTCTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTGTATTCCAGCACACTTCTGAGAGCATCACTTAAAACTTCTCTGC  896

seq1  AGCGGTGAAGTGATTACACTTACATGTGATGACCTCTGTCACCTTTTGTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTGAAGTGATTACACTTACATGTGATGACCTCTGTCACCTTTTGTC  946

seq1  ACCTTTTCTTTTCTGTCTGCATGCGCTTACTTTTCCAAAGGTAAAAATAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCTTTTCTGTCTGCATGCGCTTACTTTTCCAAAGGTAAAAATAT  996

seq1  TGCTCCCAACCCCTCCCTCACATAGTCATCTGTCTTTTATAACCACAGTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCAACCCCTCCCTCACATAGTCATCTGTCTTTTATAACCACAGTG  1046

seq1  ATTGTACTGCTTTGGCCTTGCAGATAACACTGTCACGAGGTCTTCATCTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTGCTTTGGCCTTGCAGATAACACTGTCACGAGGTCTTCATCTA  1096

seq1  ACTAGTCTCCTTCTCTGACAATGGGAATGGAAGGAATTC  1131
      |||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCTCCTTCTCTGACAATGGGAATGGAAGGAATTC  1135