BAC Information

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BAC

Clone NameB6Ng01-201P17
Chromosome2 (Build37)
Map Location 48,638,883 - 48,792,745
singlet/doubletdoublet
Overlap geneLOC383692, Acvr2a, Orc4l
Upstream geneLOC383691, LOC100041457
Downstream geneLOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201P17.bB6Ng01-201P17.g
ACCGA022603GA022604
length9471,137
definitionB6Ng01-201P17.b B6Ng01-201P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,638,883 - 48,639,770)(48,791,592 - 48,792,745)
sequence
gaattctcctttacttttgttggttttcgccatcaatattgaagacaatg
tgtcctcagaactttaaagctttcccagcaagatgagtaaattgtttaag
tctgttattggagaattggtggaaggtacacttgtttagctgagttttga
attcctttgtattgaaggcctgcctcctatttgtcttttgatttcacatt
cttttttttaaattaaattaacttttttttaagccgggcgtggtggtgca
tacctttaatctcagcacttgggaggcacaggcaggcggatttctgagtt
cgaggtcagcctggtctacaaagtgagttccaggacagccagggctacac
agagaaactctgtctcgaaccctacccccaaaaatttttttaattttttt
acatattcactttacaacctgctcacttcacccctcccagtcaccctttc
ccacaatctttcttctattcctctccccttctcctctaagtgggtagggg
tcccctgagtatcccccttccaccctggcacttcaagtctctatgacgct
aggcacttcatctcctgctagtagaacatatcccacagacaggcaatggc
ttttgggatagctccctgttctagttgtttaggactcacatgacagtcaa
gctgcacatctgctacataggagtggggaggcctaggtccagcctgtgta
tgttctttggctggtggttcagactctgagagcccaaagatccaagttag
ttgactctgttcctgtggcattcctatcccctttagggccttaaatcctt
cctttctgttcttccataagagtccccaaggtccatctgctgtttggctg
tgggtgtctgtattggttggtctgatgtggggagcgggtgttggcggcag
tcctaaaggtgccagggaactgcagctaagtcatatggacttgcacc

gaattctggtacttaacacctggtagccagctcaggtgataaggaccaaa
gtgctagcaaaaataattctctctaagcctagaggacctaaaagttagct
taattgtcccttatcttctcccactatgagaccaaatgaattcccacttt
cctggatttccttttctggtctctagagaatctctagcggctaatgttct
tttctgtgtattttctatatgcaggaaaatttagatcctttgggctagag
agccaaaagggtaaaattaatactgactttcaggtttagccttttaaaag
tatgacccaataaattatttcaccttttttttttattaattctgcctttc
cgtatcattttaggcatttgattgagctactcaaaagaactgctatctat
ggagaaagcaattctgtactcattgttggaccacgaggatcaggaaagac
cacagtaaaagacttaagtttctcatatatcattgctttaatacacattt
gaagtttttatatcagatacactaaaaatgtttttcgttttattgtcttg
caacattctttgttttctattccttttaaatgacaaaatccatgcaggta
ttctacaaagttaggttgtggtatgggagttgatcatgctttttatgttc
tctgcttggtatattgccctatactggggcagggatttcaatcctcccat
ctgccactgagagtataaggtccatgcttccatacatacatgggctctga
gggtcccaactcaggacttcacgggtcatcatcatacagtgattccccac
aagcatttttacccctttttacagtttcacagttttacaatttattttta
accttcaaacaaatctttcatgtcaaggtcatcagtatttatgtcatatt
ctcttcttctgacttagttaatctcaaattcttctccctctcatctgttc
ctttttacatatacaaacaatacatcacatttgaattgtattactattaa
ttttattgtgctagtgtataaatgtatttttctagatctgtatagccaat
taattatttttgttcaggcattattattatactttaaatagttaagaaat
agtattaactgttttctatttttgaatgtacatgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_48638883_48639770
seq2: B6Ng01-201P17.b_48_936

seq1  GAATTCTCCTTTACTTTTGTTGGTTTTCGCCATCAATATTGAAGACAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTACTTTTGTTGGTTTTCGCCATCAATATTGAAGACAATG  50

seq1  TGTCCTCAGAACTTTAAAGCTTTCCCAGCAAGATGAGTAAATTGTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAGAACTTTAAAGCTTTCCCAGCAAGATGAGTAAATTGTTTAAG  100

seq1  TCTGTTATTGGAGAATTGGTGGAAGGTACACTTGTTTAGCTGAGTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATTGGAGAATTGGTGGAAGGTACACTTGTTTAGCTGAGTTTTGA  150

seq1  ATTCCTTTGTATTGAAGGCCTGCCTCCTATTTGTCTTTTGATTTCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTGTATTGAAGGCCTGCCTCCTATTTGTCTTTTGATTTCACATT  200

seq1  CTTTTTTTTAAATTAAATTAACTTTTTTTTAAGCCGGGCGTGGTGGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTAAATTAAATTAACTTTTTTTTAAGCCGGGCGTGGTGGTGCA  250

seq1  TACCTTTAATCTCAGCACTTGGGAGGCACAGGCAGGCGGATTTCTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTAATCTCAGCACTTGGGAGGCACAGGCAGGCGGATTTCTGAGTT  300

seq1  CGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAC  350

seq1  AGAGAAACTCTGTCTCGAACCCTACCCCCAAAAATTTTTTTAATTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTCTGTCTCGAACCCTACCCCCAAAAATTTTTTTAATTTTTTT  400

seq1  ACATATTCACTTTACAACCTGCTCACTTCACCCCTCCCAGTCACCCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCACTTTACAACCTGCTCACTTCACCCCTCCCAGTCACCCTTTC  450

seq1  CCACAATCTTTCTTCTATTCCTCTCCCCTTCTCCTCTAAGTGGGTAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATCTTTCTTCTATTCCTCTCCCCTTCTCCTCTAAGTGGGTAGGGG  500

seq1  TCCCCTGAGTATCCCCCTTCCACCCTGGCACTTCAAGTCTCTATGACGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGAGTATCCCCCTTCCACCCTGGCACTTCAAGTCTCTATGACGCT  550

seq1  AGGCACTTCATCTCCTGCTAGTAGAACATATCCCACAGACAGGCAATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTCATCTCCTGCTAGTAGAACATATCCCACAGACAGGCAATGGC  600

seq1  TTTTGGGATAGCTCCCTGTTCTAGTTGTTTAGGACTCACATGACAGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGATAGCTCCCTGTTCTAGTTGTTTAGGACTCACATGACAGTCAA  650

seq1  GCTGCACATCTGCTACATAGGAGTGGGGAGGCCTAGGTCCAGCCTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACATCTGCTACATAGGAGTGGGGAGGCCTAGGTCCAGCCTGTGTA  700

seq1  TGTTCTTTGGCTGGTGGTTCAGACTCTGAGAGCCCAAAGATCCAAGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTGGCTGGTGGTTCAGACTCTGAGAGCCCAAAGATCCAAGTTAG  750

seq1  TTGACTCTGTTCCTGTGGCATTCCTATCCCCTTTAGGGCCTTAAATCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTGTTCCTGTGGCATTCCTATCCCCTTTAGGGCCTTAAATCCTT  800

seq1  CC-TTCTGTTCTTCCATAAGAGTCCCCAAGGTCCATCTGCTGTTTGGCTG  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTTCTTCCATAAGAGTCCCCAAGGTCCATCTGCTGTTTGGCTG  850

seq1  TGGGTGTCTGTATTGGTTGGTCTGATGTGGGGAGCGGGT  888
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCTGTATTGGTTGGTCTGATGTGGGGAGCGGGT  889


seq1: chr2_48791592_48792745
seq2: B6Ng01-201P17.g_63_1199 (reverse)

seq1  CAACATGTACTATTTTAAAAAATAG-AAACAGTTTTAATTTACTA--TCT  47
      ||||||||||    || |||||||| ||||||  ||||  |||||  |||
seq2  CAACATGTAC---ATTCAAAAATAGAAAACAG--TTAA--TACTATTTCT  43

seq1  TAACTATTTTTAAGGTATAATAAT-ATGCCTGAACAAAA--TATTAATTT  94
      ||||||  ||||| |||||||||| ||||||||||||||   ||||||| 
seq2  TAACTA--TTTAAAGTATAATAATAATGCCTGAACAAAAATAATTAATTG  91

seq1  GCTATTACAGAATACTAGAAAAATACAATTTATACAACTTAGCACATTAA  144
      |||| ||||||   |||||||||||| |||||||||   ||||||| |||
seq2  GCTA-TACAGA--TCTAGAAAAATAC-ATTTATACA--CTAGCACAATAA  135

seq1  AATTTAATAGTAATAC-ATTCAAATGTTGATGTATTTGTTTTGTATATTG  193
      || ||||||||||||| ||||||||| |||||||||   |||||||| ||
seq2  AA-TTAATAGTAATACAATTCAAATG-TGATGTATT--GTTTGTATA-TG  180

seq1  TAAAAAGGAACAGATGAGAGGGAGAAGAATTTTTGAGATTAACTAAGTCA  243
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  TAAAAAGGAACAGATGAGAGGGAGAAGAA--TTTGAGATTAACTAAGTCA  228

seq1  GAAGAAGAGAAATATGACATAAATACTGATGACCTTGACATGAAAGATTT  293
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAG-AATATGACATAAATACTGATGACCTTGACATGAAAGATTT  277

seq1  GTTTGAAGGTTAAAAATAAATTGTAAAACTGTGAAAACTGTAAAAAGGGG  343
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTGAAGGTTAAAAATAAATTGTAAAACTGTG-AAACTGTAAAAAGGGG  326

seq1  TAAAAATGCTTGTGGGGAATCACTGTATGATGATGACCCGTGAAGTCCTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGCTTGTGGGGAATCACTGTATGATGATGACCCGTGAAGTCCTG  376

seq1  AGTTGGGACCCTCAGAGCCCATGTATGTATGGAAGCATGGACCTTATACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGACCCTCAGAGCCCATGTATGTATGGAAGCATGGACCTTATACT  426

seq1  CTCAGTGGCAGATGGGAGGATTGAAATCCCTGCCCCAGTATAGGGCAATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGCAGATGGGAGGATTGAAATCCCTGCCCCAGTATAGGGCAATA  476

seq1  TACCAAGCAGAGAACATAAAAAGCATGATCAACTCCCATACCACAACCTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCAGAGAACATAAAAAGCATGATCAACTCCCATACCACAACCTA  526

seq1  ACTTTGTAGAATACCTGCATGGATTTTGTCATTTAAAAGGAATAGAAAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGAATACCTGCATGGATTTTGTCATTTAAAAGGAATAGAAAAC  576

seq1  AAAGAATGTTGCAAGACAATAAAACGAAAAACATTTTTAGTGTATCTGAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGTTGCAAGACAATAAAACGAAAAACATTTTTAGTGTATCTGAT  626

seq1  ATAAAAACTTCAAATGTGTATTAAAGCAATGATATATGAGAAACTTAAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTTCAAATGTGTATTAAAGCAATGATATATGAGAAACTTAAGT  676

seq1  CTTTTACTGTGGTCTTTCCTGATCCTCGTGGTCCAACAATGAGTACAGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTGTGGTCTTTCCTGATCCTCGTGGTCCAACAATGAGTACAGAA  726

seq1  TTGCTTTCTCCATAGATAGCAGTTCTTTTGAGTAGCTCAATCAAATGCCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTCCATAGATAGCAGTTCTTTTGAGTAGCTCAATCAAATGCCT  776

seq1  AAAATGATACGGAAAGGCAGAATTAATAAAAAAAAAAGGTGAAATAATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATACGGAAAGGCAGAATTAATAAAAAAAAAAGGTGAAATAATTT  826

seq1  ATTGGGTCATACTTTTAAAAGGCTAAACCTGAAAGTCAGTATTAATTTTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTCATACTTTTAAAAGGCTAAACCTGAAAGTCAGTATTAATTTTA  876

seq1  CCCTTTTGGCTCTCTAGCCCAAAGGATCTAAATTTTCCTGCATATAGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGGCTCTCTAGCCCAAAGGATCTAAATTTTCCTGCATATAGAAA  926

seq1  ATACACAGAAAAGAACATTAGCCGCTAGAGATTCTCTAGAGACCAGAAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGAAAAGAACATTAGCCGCTAGAGATTCTCTAGAGACCAGAAAA  976

seq1  GGAAATCCAGGAAAGTGGGAATTCATTTGGTCTCATAGTGGGAGAAGATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCAGGAAAGTGGGAATTCATTTGGTCTCATAGTGGGAGAAGATA  1026

seq1  AGGGACAATTAAGCTAACTTTTAGGTCCTCTAGGCTTAGAGAGAATTATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAATTAAGCTAACTTTTAGGTCCTCTAGGCTTAGAGAGAATTATT  1076

seq1  TTTGCTAGCACTTTGGTCCTTATCACCTGAGCTGGCTACCAGGTGTTAAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGCACTTTGGTCCTTATCACCTGAGCTGGCTACCAGGTGTTAAG  1126

seq1  TACCAGAATTC  1154
      |||||||||||
seq2  TACCAGAATTC  1137


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