BAC Information

Click to search

BAC

Clone NameB6Ng01-202E10
Chromosome2 (Build37)
Map Location 174,602,747 - 174,722,686
singlet/doubletdoublet
Overlap geneEdn3
Upstream geneVapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202E10.bB6Ng01-202E10.g
ACCGA022815GA022816
length1401,128
definitionB6Ng01-202E10.b B6Ng01-202E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,722,548 - 174,722,686)(174,602,747 - 174,603,843)
sequence
gattcaaacattccactcaccccgtcccagctcagcgcttttctccaatt
tggtttgaacacagttgtattccagggagaggatggtgatccaaatgtct
ccaagccaagagaatctggagagagaaggggggggggggg
gaattcaatttgattttactttgaaaacacagagaggatgttaggccacc
ctttgaggtggataattggtgatactctgtgggtctcatagaaacaggga
tgaacgagtaggccaagacttactggaaaagggcctttggccccataagt
ttcctcaagttcttagtaatttgtcccccagatcatgttgagttacatta
atgaattacgcatgtggttttaacttctcactcaactctctacaagcctt
tcctctctggagaatgagccatggttgggctgtgctcgctcttaaaatcg
gatttaaatgtttattgccctagatgccttccaatgctgaccataaccat
aagtggttgatcatttcagacagtttttgctgcacaataagaccttccca
tgatgaattccactctcagccgccccactgaggtagtggcggcggctcct
ggagagcatggagcatagccggtggtgtttgtctctttgaggacgctgca
tgcaggggctgaggtggatctctaataactgtaatttcatctgccccact
ttccccagtgccagctgtgaggcctgctgtgtgccctgccattaagttca
gttagcactaaagttaccaaggacagccgcaggtgtggaaggccttatag
gcaggcaccaggtcaggctgcagataaggaccagcaaatgggtcaagtaa
gatttccttggagggagctttgggtaactggtttctggcaggaaacccca
gtggttcatgtgtgtgcgtctgtgtatgcatgtacataaggagaccagtg
gtcaacctcaggtgtcaccccttaaggagccatccaccttttttatgaga
cagacatagccagttaggctggcgggccaccaagctacaaggatcctgct
gttctctatgtccccggcattgggatcataagcacaagtgcccaccacct
tagcttccttttatgtgcattcctggggggcctactccagtttctcgtgc
ttgaagagcgtttttatttaattgaaaacaagcctgggaaatgaagccta
gaaggtccaggcttgggatttctcaggaacctgcctctgggaggaaccta
ggccctgcatttgttttggaactgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_174722548_174722686
seq2: B6Ng01-202E10.b_42_180 (reverse)

seq1  CCCCCCCCCCCCCTTCTCTCTCCAGATTCTCTTGGCTTGGAGACATTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCTTCTCTCTCCAGATTCTCTTGGCTTGGAGACATTTGG  50

seq1  ATCACCATCCTCTCCCTGGAATACAACTGTGTTCAAACCAAATTGGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATCCTCTCCCTGGAATACAACTGTGTTCAAACCAAATTGGAGAA  100

seq1  AAGCGCTGAGCTGGGACGGGGTGAGTGGAATGTTTGAAT  139
      |||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCTGAGCTGGGACGGGGTGAGTGGAATGTTTGAAT  139

seq1: chr2_174602747_174603843
seq2: B6Ng01-202E10.g_66_1193

seq1  GAATTCAATTTGATTTTACTTTGAAAACACAGAGAGGATGTTAGGCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTGATTTTACTTTGAAAACACAGAGAGGATGTTAGGCCACC  50

seq1  CTTTGAGGTGGATAATTGGTGATACTCTGTGGGTCTCATAGAAACAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGTGGATAATTGGTGATACTCTGTGGGTCTCATAGAAACAGGGA  100

seq1  TGAACGAGTAGGCCAAGACTTACTGGAAAAGGGCCTTTGGCCCCATAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGAGTAGGCCAAGACTTACTGGAAAAGGGCCTTTGGCCCCATAAGT  150

seq1  TTCCTCAAGTTCTTAGTAATTTGTCCCCCAGATCATGTTGAGTTACATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAGTTCTTAGTAATTTGTCCCCCAGATCATGTTGAGTTACATTA  200

seq1  ATGAATTACGCATGTGGTTTTAACTTCTCACTCAACTCTCTACAAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTACGCATGTGGTTTTAACTTCTCACTCAACTCTCTACAAGCCTT  250

seq1  TCCTCTCTGGAGAATGAGCCATGGTTGGGCTGTGCTCGCTCTTAAAATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTGGAGAATGAGCCATGGTTGGGCTGTGCTCGCTCTTAAAATCG  300

seq1  GATTTAAATGTTTATTGCCCTAGATGCCTTCCAATGCTGACCATAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAATGTTTATTGCCCTAGATGCCTTCCAATGCTGACCATAACCAT  350

seq1  AAGTGGTTGATCATTTCAGACAGTTTTTGCTGCACAATAAGACCTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTTGATCATTTCAGACAGTTTTTGCTGCACAATAAGACCTTCCCA  400

seq1  TGATGAATTCCACTCTCAGCCGCCCCACTGAGGTAGTGGCGGCGGCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATTCCACTCTCAGCCGCCCCACTGAGGTAGTGGCGGCGGCTCCT  450

seq1  GGAGAGCATGGAGCATAGCCGGTGGTGTTTGTCTCTTTGAGGACGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCATGGAGCATAGCCGGTGGTGTTTGTCTCTTTGAGGACGCTGCA  500

seq1  TGCAGGGGCTGAGGTGGATCTCTAATAACTGTAATTTCATCTGCCCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGGCTGAGGTGGATCTCTAATAACTGTAATTTCATCTGCCCCACT  550

seq1  TTCCCCAGTGCCAGCTGTGAGGCCTGCTGTGTGCCCTGCCATTAAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGTGCCAGCTGTGAGGCCTGCTGTGTGCCCTGCCATTAAGTTCA  600

seq1  GTTAGCACTAAAGTTACCAAGGACAGCCGCAGGTGTGGAAGGCCTTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCACTAAAGTTACCAAGGACAGCCGCAGGTGTGGAAGGCCTTATAG  650

seq1  GCAGGCACCAGGTCAGGCTGCAGATAAGGACCAGCAAATGGGTCAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACCAGGTCAGGCTGCAGATAAGGACCAGCAAATGGGTCAAGTAA  700

seq1  GATTTCCTTGGAGGGAGCTTTGGGTAACTGGTTTCTGGCAGGAAACCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTGGAGGGAGCTTTGGGTAACTGGTTTCTGGCAGGAAACCCCA  750

seq1  GTGGTTCATGTGTGTGCGTCTGTGTATGCATGTACATAAGGAGACCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCATGTGTGTGCGTCTGTGTATGCATGTACATAAGGAGACCAGTG  800

seq1  GTCAACCTCAGGTGTCACCCCTT-AGGAGCCATCCACC-TTTTTATGAGA  848
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GTCAACCTCAGGTGTCACCCCTTAAGGAGCCATCCACCTTTTTTATGAGA  850

seq1  CAGACATAGCCAGTTAGGCTGGCGGGCCACCAAGCTACAAGGATCCTGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAGCCAGTTAGGCTGGCGGGCCACCAAGCTACAAGGATCCTGCT  900

seq1  G-TCTCTATGTCCCCGGCATTGGGATCATAAGCACAAGTGCC--ACACC-  944
      | ||||||||||||||||||||||||||||||||||||||||   |||| 
seq2  GTTCTCTATGTCCCCGGCATTGGGATCATAAGCACAAGTGCCCACCACCT  950

seq1  TAGCTTC--TTTATGTGCATTC--TGGGGGCCTACT-CAGTTTCTCGTGC  989
      |||||||  |||||||||||||   ||||||||||| |||||||||||||
seq2  TAGCTTCCTTTTATGTGCATTCCTGGGGGGCCTACTCCAGTTTCTCGTGC  1000

seq1  TTG-AGAGCGTTTT--ATTAATTGAGA--CAGGCTGGG-AATGA--GCTA  1031
      ||| ||||||||||   |||||||| |   || ||||| |||||   |||
seq2  TTGAAGAGCGTTTTTATTTAATTGAAAACAAGCCTGGGAAATGAAGCCTA  1050

seq1  G-AGGTCCAGGC-TGGGA--TCTCAGG-ACCTG-CTCT-GGAGG-AGCTA  1073
      | |||||||||| |||||  ||||||| ||||| |||| ||||| | |||
seq2  GAAGGTCCAGGCTTGGGATTTCTCAGGAACCTGCCTCTGGGAGGAACCTA  1100

seq1  GG-CCTGCA-TTGTTT--GAGCTGGGAA  1097
      || |||||| ||||||  || |||||||
seq2  GGCCCTGCATTTGTTTTGGAACTGGGAA  1128