BAC Information

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BAC

Clone NameB6Ng01-202G02
Chromosome2 (Build37)
Map Location 56,290,308 - 56,477,460
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202G02.bB6Ng01-202G02.g
ACCGA022885GA022886
length1,1681,141
definitionB6Ng01-202G02.b B6Ng01-202G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,290,308 - 56,291,494)(56,476,314 - 56,477,460)
sequence
gaattcttaagcaggaacagtcacaggaatttacccaaagtcagaagcta
gaaagccacagttctgagattcagattgaggtactctggccgcctaacta
agaaagcactgttgattttgttacctgtaaagcttactctgaacagtgct
aagggagaaaaatcagcacattttatttctaaaagtctaaggattgaaat
gttttatgttcttttttgtcctcaaaggaaaatcaagttacacaagaagg
ccagtatataatagctttgtagatcatatacttctcaatcacaaactttt
ctcaactctttttcaagcctagatcatgatggcatgagttgtcagattta
gtcactcctcataagttcatttgataaccatttatttttcctcaatacat
cctccatagatgttaataaaattaaacatgacctctaagaacattccttg
tatttatgttaagttaaaataaaaataaattataagcagacaaattgatt
cttagttttgatgttaaacccaagtaccttgtatacaaactacaaaagta
gatatcttgggtcatagtcaagtagaactcataacacagggctgaaaaat
ccaagaataagccattatgtcatggatatcaggaaagttaataagaatcc
tatgaagcctgctccagcacctgaacagaattccattgttctttaaattg
gaaatacttgaaaaggccaaacatgtcacatggtttcagaaatgcagaaa
atactatcatcgcctttgctgacccctcttaaatgaagacatagatgata
tacatagataatcccagctctaattctgaccagatgcaaaatcaattaat
tctttttttagcttacaggcagttggtcaaaagtcttagaattattatat
tactataatattatattactataaataatataatattatataatatattt
atattatatatatagtaatattatattactatagtaccctcaactgtaca
aatgagaaactggggaccagagaaattgaagacatggtttaggttgacca
cagcagtaagagtagagttgatatcaaatttatagctgtagactttataa
taaggagtttcaactacaaggcacagtagttctcattatctgtgggatat
tgttccagaatgttctgg

gaattctgacttctagaggacccagatgggttttttagcagccatatgct
gtccaacaaccaacttcgaatctactttcagtgaatccaacattcttctg
accactgtgggcactgaatacacactggacaaagacacatttacagtaaa
aatagccatacacataaaataaaagtctccaaaaaaataaagtactaaag
atgtgtctttaaattacaaatgcatacattattattttttaatttgcatg
ggagtttattatcaccacccatcggcactattgattttcagattaaactt
tataaaatgtcacccttgaatttaaaaataactgcataagatatatggtt
atgataagtgaaaagtagtgaaacgtctcatgaatctcaagaataaaaat
tatatgcagtgtaggaaatgaatatataatatagatttaaaaaacataaa
agtattttaatacagtatatagtgtgtatattatgtaccataaatgagaa
ataaaattatagaagtatccaatagctgatggaagggagaaaatgttttt
atcttcctggtcaagatgttcaggctaccactccaaacgatacttcaaaa
caacagagaggactcaaaatgtttagtttaagatgttcagggaggttcac
aaaccaaaaattctgtaacttagtatttagacaaagaaaggggaaaaaat
tcaagagtaaaactaaaatgcaaatgaaagtaacaatactagacctctat
ggcacattaacaaccttaataactataaaaatttaaatatacaaaagaga
ttgaccaatacagaaaaggaaagagaagaaagagaggaaaacactcttga
agttatcaaaaatgtgaatcttaaatgagttttgttcttcaatgtttcac
atactcggtgaaaggctgtaagtgcaatgtttacagggccaatccatctc
agcatactcttgggggaaaataaagaaatgagcaaaaatggaagaataag
tgtagcatagatcaggtcattaaaagtatacagtgatgtaagttgctgaa
acttgacatgagcatctaatcacttgacttataagtgagatgtttctacc
tacacaaagattcctccatggccaagaaacctgtgaatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56290308_56291494
seq2: B6Ng01-202G02.b_46_1213

seq1  GAATTCTTAAGCAGGAACAGTCACAGGAATTTACCCAAAGTCAGAAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCAGGAACAGTCACAGGAATTTACCCAAAGTCAGAAGCTA  50

seq1  GAAAGCCACAGTTCTGAGATTCAGATTGAGGTACTCTGGCCGCCTAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCACAGTTCTGAGATTCAGATTGAGGTACTCTGGCCGCCTAACTA  100

seq1  AGAAAGCACTGTTGATTTTGTTACCTGTAAAGCTTACTCTGAACAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCACTGTTGATTTTGTTACCTGTAAAGCTTACTCTGAACAGTGCT  150

seq1  AAGGGAGAAAAATCAGCACATTTTATTTCTAAAAGTCTAAGGATTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAAAAATCAGCACATTTTATTTCTAAAAGTCTAAGGATTGAAAT  200

seq1  GTTTTATGTTCTTTTTTGTCCTCAAAGGAAAATCAAGTTACACAAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTTCTTTTTTGTCCTCAAAGGAAAATCAAGTTACACAAGAAGG  250

seq1  CCAGTATATAATAGCTTTGTAGATCATATACTTCTCAATCACAAACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATATAATAGCTTTGTAGATCATATACTTCTCAATCACAAACTTTT  300

seq1  CTCAACTCTTTTTCAAGCCTAGATCATGATGGCATGAGTTGTCAGATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCTTTTTCAAGCCTAGATCATGATGGCATGAGTTGTCAGATTTA  350

seq1  GTCACTCCTCATAAGTTCATTTGATAACCATTTATTTTTCCTCAATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCTCATAAGTTCATTTGATAACCATTTATTTTTCCTCAATACAT  400

seq1  CCTCCATAGATGTTAATAAAATTAAACATGACCTCTAAGAACATTCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATAGATGTTAATAAAATTAAACATGACCTCTAAGAACATTCCTTG  450

seq1  TATTTATGTTAAGTTAAAATAAAAATAAATTATAAGCAGACAAATTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTTAAGTTAAAATAAAAATAAATTATAAGCAGACAAATTGATT  500

seq1  CTTAGTTTTGATGTTAAACCCAAGTACCTTGTATACAAACTACAAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTTGATGTTAAACCCAAGTACCTTGTATACAAACTACAAAAGTA  550

seq1  GATATCTTGGGTCATAGTCAAGTAGAACTCATAACACAGGGCTGAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTGGGTCATAGTCAAGTAGAACTCATAACACAGGGCTGAAAAAT  600

seq1  CCAAGAATAAGCCATTATGTCATGGATATCAGGAAAGTTAATAAGAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATAAGCCATTATGTCATGGATATCAGGAAAGTTAATAAGAATCC  650

seq1  TATGAAGCCTGCTCCAGCACCTGAACAGAATTCCATTGTTCTTTAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCCTGCTCCAGCACCTGAACAGAATTCCATTGTTCTTTAAATTG  700

seq1  GAAATACTTGAAAAGGCCAAACATGTCACATGGTTTCAGAAATGCAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTTGAAAAGGCCAAACATGTCACATGGTTTCAGAAATGCAGAAA  750

seq1  ATACTATCATCGCCTTTGCTGACCCCTCTTAAATGAAGACATAGATGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCATCGCCTTTGCTGACCCCTCTTAAATGAAGACATAGATGATA  800

seq1  TACATAGATAATCCCAGCTCTAATTCTGACCAGATGCAAAATCAATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGATAATCCCAGCTCTAATTCTGACCAGATGCAAAATCAATTAAT  850

seq1  TCTTTTTTTAGCTTACAGGCAGTTGGTCAAAAGTCTTAGAATTATTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTAGCTTACAGGCAGTTGGTCAAAAGTCTTAGAATTATTATAT  900

seq1  TACTATAATATTATATTACTATAAATAATATAATATTATATAATATTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACTATAATATTATATTACTATAAATAATATAATATTATATAATA-TATT  949

seq1  TATATTATAATAATATAGTAATATTATATTACTATAGTACCCTCAACTGT  1000
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  TATATTATA--TATATAGTAATATTATATTACTATAGTACCCTCAACTGT  997

seq1  ACAAATGAGGAAACTGGGGACCAGAGAAATTGAAGGACATGGTTAGGGTT  1050
      |||||||| ||||||||||||||||||||||||| |||||||||  || |
seq2  ACAAATGA-GAAACTGGGGACCAGAGAAATTGAA-GACATGGTTTAGG-T  1044

seq1  TGACCACCAGGCAGTAAAGAGTAGAGTTGATATTCAAATTTATAGCTGTA  1100
      |||||||   ||||| |||||||||||||||| |||||||||||||||||
seq2  TGACCAC--AGCAGT-AAGAGTAGAGTTGATA-TCAAATTTATAGCTGTA  1090

seq1  GACTTTATAATAAGAGGGTTTTTTTTCTATATTTACAA-GCACAGTAGTT  1149
      |||||||||||||| | ||||         |  ||||| |||||||||||
seq2  GACTTTATAATAAG-GAGTTT--------CAACTACAAGGCACAGTAGTT  1131

seq1  CTTCATTATCTGTGGATTATTGTTTCCAGGATG-TCTGG  1187
      | |||||||||||||  ||||| |||||| ||| |||||
seq2  C-TCATTATCTGTGGGATATTG-TTCCAGAATGTTCTGG  1168


seq1: chr2_56476314_56477460
seq2: B6Ng01-202G02.g_69_1209 (reverse)

seq1  CCTA-TCACAGTTTTCTTGGCAATGTGAG--ATCTTTGTGTTAGTAGGAA  47
      |||| |||||| ||||||||| ||| |||  ||||||||||  ||||  |
seq2  CCTATTCACAGGTTTCTTGGCCATG-GAGGAATCTTTGTGTAGGTAG--A  47

seq1  AACATCTCACTTAT-AGTCAAGTGATAAGATGCTCAATGTCAAGTTTTCA  96
      |||||||||||||| ||||||||||| |||||||| |||||||| |||||
seq2  AACATCTCACTTATAAGTCAAGTGATTAGATGCTC-ATGTCAAG-TTTCA  95

seq1  GCAACTTACATCACTGTATACTTTTTAATTGACCTGATTCCTATGCTACA  146
      |||||||||||||||||||||||||  | |||||||||  ||||||||||
seq2  GCAACTTACATCACTGTATACTTTT--AATGACCTGAT--CTATGCTACA  141

seq1  CTTTATCTTCCATTTTTTGCTCATTTCTTTATTTTCCCCCAAGAGTATGC  196
      |||  ||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTTCCA-TTTTTGCTCATTTCTTTATTTTCCCCCAAGAGTATGC  190

seq1  TGAGATGGATTTGGCCCCTGT-AACATTGCACTTACAGCCTTTCACCGAG  245
      |||||||||||  | |||||| ||||||||||||||||||||||||||||
seq2  TGAGATGGATT--GGCCCTGTAAACATTGCACTTACAGCCTTTCACCGAG  238

seq1  TATGTGAAACATTGAAGAACAAAACTCATTTAAGATTCACATTTTTGATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAAACATTGAAGAACAAAACTCATTTAAGATTCACATTTTTGATA  288

seq1  ACTTCAAGAGTGTTTTCCTCTC-TTCTTCTCTTTCCTTTTCTGTATTGGT  344
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTTCAAGAGTGTTTTCCTCTCTTTCTTCTCTTTCCTTTTCTGTATTGGT  338

seq1  CAATCTCTTTTGTATATTTAAATTTTTATAGTTATTAAGGTTGTTAATGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTTTTGTATATTTAAATTTTTATAGTTATTAAGGTTGTTAATGT  388

seq1  GCCATAGAGGTCTAGTATTGTTACTTTCATTTGCATTTTAGTTTTACTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGAGGTCTAGTATTGTTACTTTCATTTGCATTTTAGTTTTACTCT  438

seq1  TGAATTTTTTCCCCTTTCTTTGTCTAAATACTAAGTTACAGAATTTTTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTTCCCCTTTCTTTGTCTAAATACTAAGTTACAGAATTTTTGG  488

seq1  TTTGTGAACCTCCCTGAACATCTTAAACTAAACATTTTGAGTCCTCTCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAACCTCCCTGAACATCTTAAACTAAACATTTTGAGTCCTCTCTG  538

seq1  TTGTTTTGAAGTATCGTTTGGAGTGGTAGCCTGAACATCTTGACCAGGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAAGTATCGTTTGGAGTGGTAGCCTGAACATCTTGACCAGGAA  588

seq1  GATAAAAACATTTTCTCCCTTCCATCAGCTATTGGATACTTCTATAATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAACATTTTCTCCCTTCCATCAGCTATTGGATACTTCTATAATTT  638

seq1  TATTTCTCATTTATGGTACATAATATACACACTATATACTGTATTAAAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCATTTATGGTACATAATATACACACTATATACTGTATTAAAAT  688

seq1  ACTTTTATGTTTTTTAAATCTATATTATATATTCATTTCCTACACTGCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGTTTTTTAAATCTATATTATATATTCATTTCCTACACTGCAT  738

seq1  ATAATTTTTATTCTTGAGATTCATGAGACGTTTCACTACTTTTCACTTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTATTCTTGAGATTCATGAGACGTTTCACTACTTTTCACTTAT  788

seq1  CATAACCATATATCTTATGCAGTTATTTTTAAATTCAAGGGTGACATTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCATATATCTTATGCAGTTATTTTTAAATTCAAGGGTGACATTTT  838

seq1  ATAAAGTTTAATCTGAAAATCAATAGTGCCGATGGGTGGTGATAATAAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTAATCTGAAAATCAATAGTGCCGATGGGTGGTGATAATAAAC  888

seq1  TCCCATGCAAATTAAAAAATAATAATGTATGCATTTGTAATTTAAAGACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCAAATTAAAAAATAATAATGTATGCATTTGTAATTTAAAGACA  938

seq1  CATCTTTAGTACTTTATTTTTTTGGAGACTTTTATTTTATGTGTATGGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAGTACTTTATTTTTTTGGAGACTTTTATTTTATGTGTATGGCT  988

seq1  ATTTTTACTGTAAATGTGTCTTTGTCCAGTGTGTATTCAGTGCCCACAGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTGTAAATGTGTCTTTGTCCAGTGTGTATTCAGTGCCCACAGT  1038

seq1  GGTCAGAAGAATGTTGGATTCACTGAAAGTAGATTCGAAGTTGGTTGTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAGAATGTTGGATTCACTGAAAGTAGATTCGAAGTTGGTTGTTG  1088

seq1  GACAGCATATGGCTGCTAAAAAACCCATCTGGGTCCTCTAGAAGTCAGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATATGGCTGCTAAAAAACCCATCTGGGTCCTCTAGAAGTCAGAA  1138

seq1  TTC  1147
      |||
seq2  TTC  1141


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