BAC Information

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BAC

Clone NameB6Ng01-202O14
Chromosome2 (Build37)
Map Location 71,197,062 - 71,354,983
singlet/doubletdoublet
Overlap geneSlc25a12, Hat1, LOC100040177, Metapl1
Upstream geneMyo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, LOC667528
Downstream geneLOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202O14.bB6Ng01-202O14.g
ACCGA023277GA023278
length8791,164
definitionB6Ng01-202O14.b B6Ng01-202O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,197,062 - 71,197,935)(71,353,802 - 71,354,983)
sequence
gaattctgtatctcagcaaattttggtccagcatacatagctgtatggac
tataatcatcaggactataataaatcagtaagtgaacacagagtctacct
actaaaaagagttgagagatgctttaaaaattgtaaaactttgttgcaag
cctactttgtcacaaagcacagagatggcttttaagtcatctttctgaca
tttgtcagatctgtaacaaacacctctgtccccaccccgcctgcctctta
ctacttctttcactgctgtatacttctgatggagaaaaactgggtcaatg
atagtgtgtgggagagaaaggcttaagaagaaagagataactggggagat
gacaggtataaggacgtccatagtaaaaccttagattgaggacccactgt
aaaattacagtgcagttaaacagtctaagaatccgtctgttgtgatctga
tttcctgggctcggaggggaaaggcagaggcccaaaaataatacatcgtt
tattttgattttttaagatttacttatttatgtgtatgggtgtatgtatg
tttgtacatacataagtgcatgtatgtgcaccacatgcatgcctgttggg
tcccctgtaactggagtcaccaatggttgtaagcccactgtgtgagggct
gagattcaaaccccagcccttgtacaagtatcaggtgctgataactgcta
agccatctctccagcccttacacctgtttattaactaacagaaagtacat
aagctaggtatgtagctcagttggtaggatgcttgcctgacataaaagcc
tggttttgagacctaacacatttggccctgagtagtagtacacaccccat
aagccccagtacttgggggatgtagaaac
gaattcatttctattatattcgtggacagtaagatagtgagatatgcatt
aaatttcttttcccagtaggggtctgattcaacatttcctatgaaagaac
agagagacactatccttttttcccaggctagttagcctataatttaaaac
tgtcaaaaacacaattttgttcaaagtcttcaataaaagcttcttagata
taacccaaagagattttactaaagtttgattcagacactgttacaatatt
tttaaagccataaatgcatttaactgatattttactgccttttttcttaa
agtatttgaaggcgaactcagagaaaaaggcagcatcttttcaaggtgac
tgagctttccatgctttgggcaagcgggatgaattcaaaggctcgggcgc
agattaatgagaacagcactttaaaaaggactggccgatcatctttaaca
aaatgtgttacttttaaatgaaaacacatattctgcatgtctacttcaaa
acatttagggttaaaaaaaaaaaaagatctgaaagtgggaaacagattac
aaagaaaagtcttcgattcagaaaatacactcatactctaggagcaagcg
cagaaaagctctgggaaagtaaataatgttttacagaaaaaatgacccag
aggaaaggggacacagggcagcctctcaggctggttcttaatcttagctc
acacctctgatctctgcatcacaggaatgctgcctgcccttcattccttt
atagcctgggatttctctctcttttctcactatccaagggctgggaccat
cagctccttcttaggtaccttctttcacgtttgaataaaagaacatcaca
gaccaacatgtcaagctaaaacaaaagcatccatatgaatgttgctcact
cctccaggaagtttcctagctgaccctggtcaaaattcactttttttttt
aaagcctttttttttttttcaacccagggaacatatgcagcctggcagtt
cacatgctgatatcagactgatgacgctgttgaatcataaacatgtcata
gcttacacccaagccacatacgttgcgcatccgcccgaccattctttctc
gtaagtacagcttacctgatggtcaattcatggtagtgtccagctctgca
ggcttgtcaatcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_71197062_71197935
seq2: B6Ng01-202O14.b_48_926

seq1  GAATTCTGTATCTCAGCAAATTTTGGTCCAGCATACATAGCTGTATGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATCTCAGCAAATTTTGGTCCAGCATACATAGCTGTATGGAC  50

seq1  TATAATCATCAGGACTATAATAAATCAGTAAGTGAACACAGAGTCTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCATCAGGACTATAATAAATCAGTAAGTGAACACAGAGTCTACCT  100

seq1  ACTAAAAAGAGTTGAGAGATGCTTTAAAAATTGTAAAACTTTGTTGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAGAGTTGAGAGATGCTTTAAAAATTGTAAAACTTTGTTGCAAG  150

seq1  CCTACTTTGTCACAAAGCACAGAGATGGCTTTTAAGTCATCTTTCTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTGTCACAAAGCACAGAGATGGCTTTTAAGTCATCTTTCTGACA  200

seq1  TTTGTCAGATCTGTAACAAACACCTCTGTCCCCACCCCGCCTGCCTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGATCTGTAACAAACACCTCTGTCCCCACCCCGCCTGCCTCTTA  250

seq1  CTACTTCTTTCACTGCTGTATACTTCTGATGGAGAAAAACTGGGTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTTTCACTGCTGTATACTTCTGATGGAGAAAAACTGGGTCAATG  300

seq1  ATAGTGTGTGGGAGAGAAAGGCTTAAGAAGAAAGAGATAACTGGGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGTGGGAGAGAAAGGCTTAAGAAGAAAGAGATAACTGGGGAGAT  350

seq1  GACAGGTATAAGGACGTCCATAGTAAAACCTTAGATTGAGGACCCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTATAAGGACGTCCATAGTAAAACCTTAGATTGAGGACCCACTGT  400

seq1  AAAATTACAGTGCAGTTAAACAGTCTAAGAATCCGTCTGTTGTGATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAGTGCAGTTAAACAGTCTAAGAATCCGTCTGTTGTGATCTGA  450

seq1  TTTCCTGGGCTCGGAGGGGAAAGGCAGAGGCCCAAAAATAATACATCGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGGCTCGGAGGGGAAAGGCAGAGGCCCAAAAATAATACATCGTT  500

seq1  TATTTTGATTTTTTAAGATTTACTTATTTATGTGTATGGGTGTATGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATTTTTTAAGATTTACTTATTTATGTGTATGGGTGTATGTATG  550

seq1  TTTGTACATACATAAGTGCATGTATGTGCACCACATGCATGCCTGTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACATACATAAGTGCATGTATGTGCACCACATGCATGCCTGTTGGG  600

seq1  TCCCCTGTAACTGGAGTCACCAATGGTTGTAAG-CCACTGTGTGAGGGCT  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCCCTGTAACTGGAGTCACCAATGGTTGTAAGCCCACTGTGTGAGGGCT  650

seq1  GAGATTCAAACCCCAGCCCTTGTACAAGTATCAGGTGCTGATAACTGCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCAAACCCCAGCCCTTGTACAAGTATCAGGTGCTGATAACTGCTA  700

seq1  AGCCATCTCTCCAGCCCTTACACCTGTTTATTAACTAACAGAAAGTACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCTCCAGCCCTTACACCTGTTTATTAACTAACAGAAAGTACAT  750

seq1  AAGCTAGGTATGTAGCTCAGTTGGTAGGATGCTTGCCTGACATAAAAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGGTATGTAGCTCAGTTGGTAGGATGCTTGCCTGACATAAAAGCC  800

seq1  TGGTTTTGAGACCTAACACA-TTGGCCCTGAGTAGTAGTACACA-CCCAT  847
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  TGGTTTTGAGACCTAACACATTTGGCCCTGAGTAGTAGTACACACCCCAT  850

seq1  AAG-CCCAGTACTT-GGGGATGTAGAAAC  874
      ||| |||||||||| ||||||||||||||
seq2  AAGCCCCAGTACTTGGGGGATGTAGAAAC  879

seq1: chr2_71353802_71354983
seq2: B6Ng01-202O14.g_64_1227 (reverse)

seq1  GCGATTG--CAGCCTGCAGAGCTGGGGCCCCCTTCTCTGTAATTGGAAAC  48
      |||||||   |||||||||||||||    | || |  || |||||     
seq2  GCGATTGACAAGCCTGCAGAGCTGG---ACACTACCATG-AATTG-----  41

seq1  ACAATCAGGTAAGCCTTGTACCTACGAGAAAGAAGGGTCGGGCGGATGGC  98
      || |||||||||||  ||||| |||||||||||| |||||||||||| ||
seq2  ACCATCAGGTAAGC--TGTACTTACGAGAAAGAATGGTCGGGCGGAT-GC  88

seq1  GCAAAGGTTATTGGTGGCTT-GGTGTAAAGCTAATGACATGTTTTATGAT  147
      |||| |  |||  ||||||| ||||| ||||| |||||||| ||||||||
seq2  GCAACG--TAT--GTGGCTTGGGTGT-AAGCT-ATGACATG-TTTATGAT  131

seq1  TC-ACAGCCGTCATTCAGTCTGATATCAGCATGTGAACTGCCAGGCTGCA  196
      || |||| ||||| ||||||||||||||||||||||||||||||||||| 
seq2  TCAACAG-CGTCA-TCAGTCTGATATCAGCATGTGAACTGCCAGGCTGC-  178

seq1  ATATTGTTCCCTGGGTTGAAAAAAAAAAAAAGGCTTT-AAAAAAAAAGTG  245
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATA-TGTTCCCTGGGTTGAAAAAAAAAAAAAGGCTTTAAAAAAAAAAGTG  227

seq1  AATTTTGACCAGGGTCAGCTAGGAAACTTCCTGGAGGAGTGAGCAACATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGACCAGGGTCAGCTAGGAAACTTCCTGGAGGAGTGAGCAACATT  277

seq1  CATATGGATGCTTTTGTTTTAGCTTGACATGTTGGTCTGTGATGTTCTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGATGCTTTTGTTTTAGCTTGACATGTTGGTCTGTGATGTTCTTT  327

seq1  TATTCAAACGTGAAAGAAGGTACCTAAGAAGGAGCTGATGGTCCCAGCCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAACGTGAAAGAAGGTACCTAAGAAGGAGCTGATGGTCCCAGCCC  377

seq1  TTGGATAGTGAGAAAAGAGAGAGAAATCCCAGGCTATAAAGGAATGAAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAGTGAGAAAAGAGAGAGAAATCCCAGGCTATAAAGGAATGAAGG  427

seq1  GCAGGCAGCATTCCTGTGATGCAGAGATCAGAGGTGTGAGCTAAGATTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGCATTCCTGTGATGCAGAGATCAGAGGTGTGAGCTAAGATTAA  477

seq1  GAACCAGCCTGAGAGGCTGCCCTGTGTCCCCTTTCCTCTGGGTCATTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGCCTGAGAGGCTGCCCTGTGTCCCCTTTCCTCTGGGTCATTTTT  527

seq1  TCTGTAAAACATTATTTACTTTCCCAGAGCTTTTCTGCGCTTGCTCCTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAACATTATTTACTTTCCCAGAGCTTTTCTGCGCTTGCTCCTAG  577

seq1  AGTATGAGTGTATTTTCTGAATCGAAGACTTTTCTTTGTAATCTGTTTCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGTGTATTTTCTGAATCGAAGACTTTTCTTTGTAATCTGTTTCC  627

seq1  CACTTTCAGATCTTTTTTTTTTTTTAACCCTAAATGTTTTGAAGTAGACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAGATCTTTTTTTTTTTTTAACCCTAAATGTTTTGAAGTAGACA  677

seq1  TGCAGAATATGTGTTTTCATTTAAAAGTAACACATTTTGTTAAAGATGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATATGTGTTTTCATTTAAAAGTAACACATTTTGTTAAAGATGAT  727

seq1  CGGCCAGTCCTTTTTAAAGTGCTGTTCTCATTAATCTGCGCCCGAGCCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGTCCTTTTTAAAGTGCTGTTCTCATTAATCTGCGCCCGAGCCTT  777

seq1  TGAATTCATCCCGCTTGCCCAAAGCATGGAAAGCTCAGTCACCTTGAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCATCCCGCTTGCCCAAAGCATGGAAAGCTCAGTCACCTTGAAAA  827

seq1  GATGCTGCCTTTTTCTCTGAGTTCGCCTTCAAATACTTTAAGAAAAAAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGCCTTTTTCTCTGAGTTCGCCTTCAAATACTTTAAGAAAAAAGG  877

seq1  CAGTAAAATATCAGTTAAATGCATTTATGGCTTTAAAAATATTGTAACAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAATATCAGTTAAATGCATTTATGGCTTTAAAAATATTGTAACAG  927

seq1  TGTCTGAATCAAACTTTAGTAAAATCTCTTTGGGTTATATCTAAGAAGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAATCAAACTTTAGTAAAATCTCTTTGGGTTATATCTAAGAAGCT  977

seq1  TTTATTGAAGACTTTGAACAAAATTGTGTTTTTGACAGTTTTAAATTATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAAGACTTTGAACAAAATTGTGTTTTTGACAGTTTTAAATTATA  1027

seq1  GGCTAACTAGCCTGGGAAAAAAGGATAGTGTCTCTCTGTTCTTTCATAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTAGCCTGGGAAAAAAGGATAGTGTCTCTCTGTTCTTTCATAGG  1077

seq1  AAATGTTGAATCAGACCCCTACTGGGAAAAGAAATTTAATGCATATCTCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGAATCAGACCCCTACTGGGAAAAGAAATTTAATGCATATCTCA  1127

seq1  CTATCTTACTGTCCACGAATATAATAGAAATGAATTC  1182
      |||||||||||||||||||||||||||||||||||||
seq2  CTATCTTACTGTCCACGAATATAATAGAAATGAATTC  1164