MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-203P09
Chromosome	2 (Build37)
Map Location	10,966,844 - 11,114,537
singlet/doublet	doublet
Overlap gene	LOC100040703, LOC667192, Prkcq
Upstream gene	Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2, LOC100040690
Downstream gene	LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8
Link	Open Mouse BAC browser

Click to get alignment info.

name	Taf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209361 MGI:2388097
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp5c1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11949 MGI:1261437
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kin (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16588 MGI:96676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itih2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16425 MGI:96619
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itih5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209378 MGI:1925751
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sfmbt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:353282 MGI:2447794
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040690 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040690
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC100040703 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040703
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC667192 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667192
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 7 Proteins pseudo : _no_value

name	Prkcq (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18761 MGI:97601
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040733 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040733
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs

name	LOC100040898 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040898
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 133 mRNAs, 3939 ESTs, 23 Proteins

name	LOC667211 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667211
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 Proteins pseudo : _no_value

name	Pfkfb3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170768 MGI:2181202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76938 MGI:1924188
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il2ra (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16184 MGI:96549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il15ra (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16169 MGI:104644
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Fbxo18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50755 MGI:1354699
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320816 MGI:2444796
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG635919 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:635919 MGI:3643570
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	LOC667247 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667247
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 23 ESTs, 5 Proteins pseudo : _no_value

name	Itga8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241226 MGI:109442
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Taf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362642 GeneID:209361 MGI:2388097
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor transcript_id : NM_027748.2

name	Atp5c1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368640 GeneID:11949 MGI:1261437
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 transcript_id : NM_020615.3

name	Kin (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130378 GeneID:16588 MGI:96676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : antigenic determinant of rec-A protein transcript_id : NM_025280.2

name	Itih2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803557 GeneID:16425 MGI:96619
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inter-alpha trypsin inhibitor, heavy chain 2 transcript_id : NM_010582.2

name	Itih5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286821 GeneID:209378 MGI:1925751
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inter-alpha (globulin) inhibitor H5 transcript_id : NM_172471.2

name	Sfmbt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348084 GeneID:353282 MGI:2447794
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Scm-like with four mbt domains 2 transcript_id : NM_177386.4

name	Prkcq (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130636 GeneID:18761 MGI:97601
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, theta transcript_id : NM_008859.2

name	LOC100040733 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248884 GeneID:100040733
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs product : similar to pol protein transcript_id : XM_001475160.1

name	LOC100040898 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248896 GeneID:100040898
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 92 mRNAs, 1945 ESTs, 23 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), transcript variant 2 transcript_id : XM_001475541.1

name	LOC100040898 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248894 GeneID:100040898
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 133 mRNAs, 3938 ESTs, 23 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), transcript variant 1 transcript_id : XM_001475515.1

name	Pfkfb3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87298846 GeneID:170768 MGI:2181202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 3 transcript_id : NM_133232.2

name	Rbm17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22779923 GeneID:76938 MGI:1924188
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 17 transcript_id : NM_152824.1

name	Il2ra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34556198 GeneID:16184 MGI:96549
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 2 receptor, alpha chain transcript_id : NM_008367.2

name	Il15ra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19745159 GeneID:16169 MGI:104644
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 15 receptor, alpha chain transcript_id : NM_133836.1

name	Il15ra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680408 GeneID:16169 MGI:104644
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 15 receptor, alpha chain transcript_id : NM_008358.1

name	Fbxo18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703349 GeneID:50755 MGI:1354699
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 18 transcript_id : NM_015792.1

name	Ankrd16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343209 GeneID:320816 MGI:2444796
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 16 transcript_id : NM_177268.2

name	EG635919 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149248890 GeneID:635919 MGI:3643570
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : predicted gene, EG635919 transcript_id : XM_989243.2

name	Itga8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131074 GeneID:241226 MGI:109442
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrin alpha 8 transcript_id : NM_001001309.2

name	Taf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74315971 CCDS:CCDS15675.1 GeneID:209361 MGI:2388097
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005669 - transcription factor TFIID complex [Evidence ISS] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003702 - RNA polymerase II transcription factor activity [Evidence TAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006366 - transcription from RNA polymerase II promoter [Evidence TAS] codon_start : 1 exception : mismatches in translation note : RNA polymerase II transcription factor, TFIID subunit; TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa product : TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_id : NP_082024.1

name	Atp5c1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11602916 GeneID:11949 MGI:1261437
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ATP synthase gamma-subunit gene encoding a mitochondrial protein; F1 gamma product : ATP synthase, H+ transporting, mitochondrial F1 complex, gamma subunit protein_id : NP_065640.1

name	Kin (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859684 CCDS:CCDS15676.1 GeneID:16588 MGI:96676
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : KIN, antigenic determinant of recA protein homolog product : antigenic determinant of rec-A protein protein_id : NP_079556.1

name	Itih2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754384 CCDS:CCDS15677.1 GeneID:16425 MGI:96619
definition	GO_function : GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0030212 - hyaluronan metabolism [Evidence IEA] codon_start : 1 product : inter-alpha trypsin inhibitor, heavy chain 2 protein_id : NP_034712.1

name	Itih5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369644 CCDS:CCDS15678.1 GeneID:209378 MGI:1925751
definition	GO_function : GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0030212 - hyaluronan metabolism [Evidence IEA] codon_start : 1 note : inter-alpha trypsin inhibitor heavy chain precursor 5 product : inter-alpha (globulin) inhibitor H5 protein_id : NP_766059.1

name	Sfmbt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91206402 GeneID:353282 MGI:2447794
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 note : Scm-related gene containing four mbt domain 2 product : Scm-like with four mbt domains 2 protein_id : NP_796360.2

name	Prkcq (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679353 CCDS:CCDS15682.1 GeneID:18761 MGI:97601
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0001772 - immunological synapse [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004697 - protein kinase C activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0051092 - activation of NF-kappaB transcription factor [Evidence ISS]; GO:0007242 - intracellular signaling cascade [Evidence IMP]; GO:0045086 - positive regulation of interleukin-2 biosynthesis [Evidence IMP]; GO:0050870 - positive regulation of T cell activation [Evidence IMP]; GO:0042102 - positive regulation of T cell proliferation [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 note : PKC theta product : protein kinase C, theta protein_id : NP_032885.1

name	LOC100040733 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248885 GeneID:100040733
definition	codon_start : 1 product : similar to pol protein protein_id : XP_001475210.1

name	LOC100040898 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248895 GeneID:100040898
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) isoform 1 protein_id : XP_001475565.1

name	LOC100040898 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248897 GeneID:100040898
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) isoform 2 protein_id : XP_001475591.1

name	Pfkfb3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87298847 CCDS:CCDS15683.1 GeneID:170768 MGI:2181202
definition	codon_start : 1 note : inducible 6-phosphofructo-2-kinase; 6-phosphofructo-2-kinase/fructose-2,6-biphosphata se 3 product : 6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 3 protein_id : NP_573495.2

name	Rbm17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22779924 CCDS:CCDS15684.1 GeneID:76938 MGI:1924188
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence TAS] [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0031202 - RNA splicing factor activity, transesterification mechanism [Evidence TAS] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0008380 - RNA splicing [Evidence TAS] codon_start : 1 product : RNA binding motif protein 17 protein_id : NP_690037.1

name	Il2ra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34556199 CCDS:CCDS15685.1 GeneID:16184 MGI:96549
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA] GO_function : GO:0019976 - interleukin-2 binding [Evidence IPI]; GO:0004911 - interleukin-2 receptor activity [Evidence IMP]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006924 - activated T cell apoptosis [Evidence IMP]; GO:0050728 - negative regulation of inflammatory response [Evidence IMP]; GO:0042130 - negative regulation of T cell proliferation [Evidence IMP]; GO:0042104 - positive regulation of activated T cell proliferation [Evidence IMP]; GO:0043065 - positive regulation of apoptosis [Evidence IMP]; GO:0043029 - T cell homeostasis [Evidence IMP] codon_start : 1 exception : mismatches in translation note : IL-2R alpha chain; p55 chain product : interleukin 2 receptor, alpha chain protein_id : NP_032393.2

name	Il15ra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680409 CCDS:CCDS15686.1 GeneID:16169 MGI:104644
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004907 - interleukin receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : interleukin 15 receptor, alpha chain isoform 1 protein_id : NP_032384.1

name	Il15ra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19745160 CCDS:CCDS15687.1 GeneID:16169 MGI:104644
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004907 - interleukin receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : interleukin 15 receptor, alpha chain isoform 2 protein_id : NP_598597.1

name	Fbxo18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703350 CCDS:CCDS15688.1 GeneID:50755 MGI:1354699
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : F-box only protein 18 product : F-box protein 18 protein_id : NP_056607.1

name	Ankrd16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893341 GeneID:320816 MGI:2444796
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 product : ankyrin repeat domain 16 protein_id : NP_796242.1

name	EG635919 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149248891 GeneID:635919 MGI:3643570
definition	codon_start : 1 product : similar to Ankrd26 protein protein_id : XP_994337.2

name	Itga8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47717127 CCDS:CCDS15689.1 GeneID:241226 MGI:109442
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0030030 - cell projection organization and biogenesis [Evidence IMP]; GO:0030198 - extracellular matrix organization and biogenesis [Evidence IMP]; GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0007613 - memory [Evidence IMP] codon_start : 1 product : integrin alpha 8 protein_id : NP_001001309.1

name	LOC100040690 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040690
definition	number : 3 pseudo : _no_value

name	LOC100040690 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040690
definition	number : 2 pseudo : _no_value

name	LOC100040690 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040690
definition	number : 1 pseudo : _no_value

name	LOC100040703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040703
definition	number : 1 pseudo : _no_value

name	LOC100040703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040703
definition	number : 2 pseudo : _no_value

name	LOC667211 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667211
definition	number : 1 pseudo : _no_value

name	LOC667192 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248893 GeneID:667192
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 7 Proteins product : similar to zinc finger and BTB domain containing 2 pseudo : _no_value transcript_id : XR_032260.1

name	LOC667247 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248892 GeneID:667247
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 23 ESTs, 5 Proteins product : similar to karyopherin (importin) alpha 2 pseudo : _no_value transcript_id : XR_032162.1

clone name	MSMg01-367J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522N22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-161A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504L24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-397N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500M13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-147D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545L21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-072P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402F07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-402F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112I13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-373I21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-379D09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-416K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465A03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-153N04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-346G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294L07
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-203P09.b	B6Ng01-203P09.g
ACC	GA024035	GA024036
length	1,069	1,069
definition	B6Ng01-203P09.b	B6Ng01-203P09.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(11,113,464 - 11,114,537)	(10,966,844 - 10,967,909)
sequence	gaattcactaagccattctcaagcattctgctgctcattttcctagctgt gaaataattcagccataggcaataaaaggttaaggatcaaaagtgaaagc agagatgaaccttatgaataaggattacagctgtcggcttaggtaagaga agattcacctaggagctggcattcactgcccactaccaagacccaggcgc tatgtagtaacaaaagaatccagggtagaaaaagagagtcacgtgtgctt tgagcccttctagaggacccaaggggagcactcaaggatgtgtgggtcta gcagagagggtggccatgctgcttctacgctgtctaatggtgcctttgtt tttcttaaccatgattttgcggcagtgagaatgtatgagatttttttttt tctgagtcatacgttaaacaatctgaaagctgctggggttgcagaagttc ccctgagcttcccagccttgtctggattcttcaggcaccggccattactc aacctgctctcaccgagccctgtttgctttcttctccaacagacaggtct tctgagggctagctagcatcttctccttttatccctctttcctctctata cacaaaattatgtccaatgtggttagatatctgatcaagaaatatttaac tcaaataaggcaaatttaaagtttaaaattaaaaaaatgtccagtttctg ctcattgactaaaccaggctaaggtgtcgtggaatgtccacggaacctgg gtttttaaggtgatccgtgccttttcaaagtcctaaggtggcagagaatt tcaggcattggaaaagaatgtggtgaaaattttctacaatattttgtagg aagaaatgttccaaggcagtggttctccaccttgtgagtcccacaccacc cctttgggggttgtctatcagatatttacattatggttcattattagacc caaattaagttatgaagctagaaatgaaataatttcactgattagtggtc accacaacatgagatctagggccaacagcattggaggttaaaaacactgg tctgaggttcttccaacag	gaattcctaactccccatccaaacactggctttgtgcaaatccacacaca tacacacactataattacttaataagctatcaaatgatctgttcctgaag gagaaatatttataatgtgaacacttgggatgatatagcctatgaaaaaa tggtacctttaatgctttaagagcaaaacaaaaacagaaggaaacaaaac aaaaacaaaaatattcttgcttttataattaatgcctttgattaatcagt aatgggctactacattagcctatacacaggggggccagaatacaaaaagc aatgatgtaaaaactactagtgcaatgctaatgaagcaaatcagaatatg tcactcctgaatatgccacccttaaatttgccacccgtaaatatgtcact cctgaatatgccacttctaaatgtgccacttgggcctgccacttacttat tttgagctcaaggcaattgagaaagatcagagtcacactcattttctgcc caaaagcaaagagtacatctggaattgtaaagatgtttccctctctctta acaagaagagaagaaagattctcaaccatgggggtgagggtagcaatgct tactactgaagatttgagtctgccaaaaataaagaactaacaaacttccc accatgctagcagttgtaattgaaattgtaagcaaggcaacaattaaatg ctttcctttataagagttgctttggtcatggtgtcccttcacagcataga acactgactaagacaatctgttttactcttcctggcatatcatttccttt ggtgcgcccttctcttctttaatctttaatatttaatctattaattaaat atgtactaattatataatttatacaattaattatgcacatatatgtgcaa atatatgtactcctataagtttgctattcttagaaactaaaactctaatg actttgtcgaaattccttctctaacagtttactgatgtttacagaggaag atacatagctctcaagcctaatgacttgtggaaatctttgcttcttccaa gcacagttcctcatgtata
quality values	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr2_11113464_11114537
seq2: B6Ng01-203P09.b_43_1111 (reverse)

seq1  CTGTTGGGAAGAAACCCTTCAGACCAGTGGTTCTTAACCTTCCCAATGCT  50
      ||||| |||||||   | |||||||||| ||| |||||||  ||||||||
seq2  CTGTT-GGAAGAA---CCTCAGACCAGT-GTTTTTAACCT--CCAATGCT  43

seq1  GTGGCCCTTAGTTCTTCATGTTGTGGTGACCACTAATCA-TGAAATTATT  99
      || | || ||| || |||||||||||||||||||||||| ||||||||||
seq2  GTTGGCCCTAGATC-TCATGTTGTGGTGACCACTAATCAGTGAAATTATT  92

seq1  TCATTTCTA-CTTCATAACTTTAATTTTGGTACTATTATGAACCATAATG  148
      ||||||||| ||||||||| ||||||| |||   || |||||||||||||
seq2  TCATTTCTAGCTTCATAAC-TTAATTTGGGTCTAATAATGAACCATAATG  141

seq1  TAAATATCTGATAGACAACCCCCAAAGGGGTTGTGTGGGACTCAC-AGGT  197
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TAAATATCTGATAGACAACCCCCAAAGGGGTGGTGTGGGACTCACAAGGT  191

seq1  GGAGAACCACTGCCTTGGAACATTTCTTCCTACAAAATATTGTAGAAAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACCACTGCCTTGGAACATTTCTTCCTACAAAATATTGTAGAAAAT  241

seq1  TTTCACCACATTCTTTTCCAATGCCTGAAATTCTCTGCCACCTTAGGACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCACATTCTTTTCCAATGCCTGAAATTCTCTGCCACCTTAGGACT  291

seq1  TTG-AAAGGCACGGATCACCTTAAAAACCCAGGTTCCGTGGACATTCCAC  346
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGGCACGGATCACCTTAAAAACCCAGGTTCCGTGGACATTCCAC  341

seq1  GACACCTTAGCCTGGTTTAGTCAATGAGCAGAAACTGGACATTTTTTTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTAGCCTGGTTTAGTCAATGAGCAGAAACTGGACATTTTTTTAA  391

seq1  TTTTAAACTTTAAATTTGCCTTATTTGAGTTAAATATTTCTTGATCAGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACTTTAAATTTGCCTTATTTGAGTTAAATATTTCTTGATCAGAT  441

seq1  ATCTAACCACATTGGACATAATTTTGTGTATAGAGAGGAAAGAGGGATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACCACATTGGACATAATTTTGTGTATAGAGAGGAAAGAGGGATAA  491

seq1  AAGGAGAAGATGCTAGCTAGCCCTCAGAAGACCTGTCTGTTGGAGAAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGATGCTAGCTAGCCCTCAGAAGACCTGTCTGTTGGAGAAGAA  541

seq1  AGCAAACAGGGCTCGGTGAGAGCAGGTTGAGTAATGGCCGGTGCCTGAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAGGGCTCGGTGAGAGCAGGTTGAGTAATGGCCGGTGCCTGAAG  591

seq1  AATCCAGACAAGGCTGGGAAGCTCAGGGGAACTTCTGCAACCCCAGCAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGACAAGGCTGGGAAGCTCAGGGGAACTTCTGCAACCCCAGCAGC  641

seq1  TTTCAGATTGTTTAACGTATGACTCAGAAAAAAAAAAATCTCATACATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATTGTTTAACGTATGACTCAGAAAAAAAAAAATCTCATACATTC  691

seq1  TCACTGCCGCAAAATCATGGTTAAGAAAAACAAAGGCACCATTAGACAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCGCAAAATCATGGTTAAGAAAAACAAAGGCACCATTAGACAGC  741

seq1  GTAGAAGCAGCATGGCCACCCTCTCTGCTAGACCCACACATCCTTGAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGCAGCATGGCCACCCTCTCTGCTAGACCCACACATCCTTGAGTG  791

seq1  CTCCCCTTGGGTCCTCTAGAAGGGCTCAAAGCACACGTGACTCTCTTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTGGGTCCTCTAGAAGGGCTCAAAGCACACGTGACTCTCTTTTT  841

seq1  CTACCCTGGATTCTTTTGTTACTACATAGCGCCTGGGTCTTGGTAGTGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTGGATTCTTTTGTTACTACATAGCGCCTGGGTCTTGGTAGTGGG  891

seq1  CAGTGAATGCCAGCTCCTAGGTGAATCTTCTCTTACCTAAGCCGACAGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATGCCAGCTCCTAGGTGAATCTTCTCTTACCTAAGCCGACAGCT  941

seq1  GTAATCCTTATTCATAAGGTTCATCTCTGCTTTCACTTTTGATCCTTAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCTTATTCATAAGGTTCATCTCTGCTTTCACTTTTGATCCTTAAC  991

seq1  CTTTTATTGCCTATGGCTGAATTATTTCACAGCTAGGAAAATGAGCAGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGCCTATGGCTGAATTATTTCACAGCTAGGAAAATGAGCAGCA  1041

seq1  GAATGCTTGAGAATGGCTTAGTGAATTC  1074
      ||||||||||||||||||||||||||||
seq2  GAATGCTTGAGAATGGCTTAGTGAATTC  1069

seq1: chr2_10966844_10967909
seq2: B6Ng01-203P09.g_65_1133

seq1  GAATTCCTAACTCCCCATCCAAACACTGGCTTTGTGCAAATCCACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACTCCCCATCCAAACACTGGCTTTGTGCAAATCCACACACA  50

seq1  TACACACACTATAATTACTTAATAAGCTATCAAATGATCTGTTCCTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACTATAATTACTTAATAAGCTATCAAATGATCTGTTCCTGAAG  100

seq1  GAGAAATATTTATAATGTGAACACTTGGGATGATATAGCCTATGAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATATTTATAATGTGAACACTTGGGATGATATAGCCTATGAAAAAA  150

seq1  TGGTACCTTTAATGCTTTAAGAGCAAAACAAAAACAGAAGGAAACAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTTTAATGCTTTAAGAGCAAAACAAAAACAGAAGGAAACAAAAC  200

seq1  AAAAACAAAAATATTCTTGCTTTTATAATTAATGCCTTTGATTAATCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAATATTCTTGCTTTTATAATTAATGCCTTTGATTAATCAGT  250

seq1  AATGGGCTACTACATTAGCCTATACACAGGGGGGCCAGAATACAAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCTACTACATTAGCCTATACACAGGGGGGCCAGAATACAAAAAGC  300

seq1  AATGATGTAAAAACTACTAGTGCAATGCTAATGAAGCAAATCAGAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTAAAAACTACTAGTGCAATGCTAATGAAGCAAATCAGAATATG  350

seq1  TCACTCCTGAATATGCCACCCTTAAATTTGCCACCCGTAAATATGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTGAATATGCCACCCTTAAATTTGCCACCCGTAAATATGTCACT  400

seq1  CCTGAATATGCCACTTCTAAATGTGCCACTTGGGCCTGCCACTTACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATATGCCACTTCTAAATGTGCCACTTGGGCCTGCCACTTACTTAT  450

seq1  TTTGAGCTCAAGGCAATTGAGAAAGATCAGAGTCACACTCATTTTCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTCAAGGCAATTGAGAAAGATCAGAGTCACACTCATTTTCTGCC  500

seq1  CAAAAGCAAAGAGTACATCTGGAATTGTAAAGATGTTTCCCTCTCTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAAAGAGTACATCTGGAATTGTAAAGATGTTTCCCTCTCTCTTA  550

seq1  ACAAGAAGAGAAGAAAGATTCTCAACCATGGGGGTGAGGGTAGCAATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGAGAAGAAAGATTCTCAACCATGGGGGTGAGGGTAGCAATGCT  600

seq1  TACTACTGAAGATTTGAGTCTGCCAAAAATAAAGAACTAACAAACTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGAAGATTTGAGTCTGCCAAAAATAAAGAACTAACAAACTTCCC  650

seq1  ACCATGCTAGCAGTTGTAATTGAAATTGTAAGCAAGGCAACAATTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTAGCAGTTGTAATTGAAATTGTAAGCAAGGCAACAATTAAATG  700

seq1  CTTTCCTTTATAAGAGTTGCTTTGGTCATGGTGTCCCTTCACAGCATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTATAAGAGTTGCTTTGGTCATGGTGTCCCTTCACAGCATAGA  750

seq1  ACACTGACTAAGACAATCTGTTTTACTCTTCCTGGCATATCATTTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACTAAGACAATCTGTTTTACTCTTCCTGGCATATCATTTCCTTT  800

seq1  GGTGCGCCCTTCTCTTCTTTAATCTTTAATATTTAATCTATTAATTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGCCCTTCTCTTCTTTAATCTTTAATATTTAATCTATTAATTAAAT  850

seq1  ATGTACTAATTATATAA-TTATACAATTAATTATGCACATATATGTGCAA  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGTACTAATTATATAATTTATACAATTAATTATGCACATATATGTGCAA  900

seq1  ATATATGTACTCCTATAAGTTTGCTATTCTTAGAAACTAAAACTCT-ATG  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATATATGTACTCCTATAAGTTTGCTATTCTTAGAAACTAAAACTCTAATG  950

seq1  ACTTTTGTCG-AATTCCTTCTCT-ACAGTTTACTGGTTGTTTACAGAGG-  995
      || ||||||| |||||||||||| |||||||||| | |||||||||||| 
seq2  AC-TTTGTCGAAATTCCTTCTCTAACAGTTTACT-GATGTTTACAGAGGA  998

seq1  AGATACATAAGCTCTCAAGCCTAATGACTTGTTGGAATCTTTGCTTCTTC  1045
      |||||||| ||||||||||||||||||||||| | |||||||||||||||
seq2  AGATACAT-AGCTCTCAAGCCTAATGACTTGTGGAAATCTTTGCTTCTTC  1047

seq1  CCAGCACAGTT-CTCATGTATA  1066
      | ||||||||| ||||||||||
seq2  CAAGCACAGTTCCTCATGTATA  1069

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information