BAC Information

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BAC

Clone NameB6Ng01-205O06
Chromosome2 (Build37)
Map Location 102,406,600 - 102,490,600
singlet/doubletdoublet
Overlap geneE430002G05Rik
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1
Downstream geneSlc1a2, Cd44, Pdhx, Apip, Ehf, Elf5, Cat, Abtb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205O06.bB6Ng01-205O06.g
ACCGA025448GA025449
length1,1861,108
definitionB6Ng01-205O06.b B6Ng01-205O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,406,600 - 102,407,810)(102,489,473 - 102,490,600)
sequence
gaattctcaagtctccagaggagtgatggagtcacccaaggccaggaaat
gttctgtctatggggcctagagtcgtattcttctgccctggctccagctg
ttaaccagaccttccagcagggaagaaggttgtgtagtgtgaagaagcag
taaaggcagccggacagctgtggagaggtgcggtgagcagcggtgagtga
ggggctccagcagcttaactgttatctccctgtttcctgcaccttccctt
ccattttgtctcagaagattcataaatgaaatagagtttaaggaagaagt
ctcagaagttttcatcacatgagactagatgggatggctatggaggcttt
ggtgtactcagaagcaatctctgagagttagaagacagcatatggaggtc
ccagcatgctgtaggtaacagtggctttccttgacatcttctggggtggt
cctgaccagcacctgtgttgtaacaaatgatgtgctacttcaacagagta
tgggacagaaagattcttgttttcactcagagtccccaatcttcagacca
acctcaatggccatcatatccacttatgtcttcaatagcattgaaaactt
tgtgttttaagattctactaagggggcataattcccctctgcctctctgc
atttgtaagtacaatctgctgaaggaattgtttctgtatctaaccagggc
cagataacgctaaagcaaactgctaggacattccaggacagcggaagtga
atgcagaatagcaacgatgacaatgatgacagcatccaactgtctttcct
gtctcgctcatttgtttctccatatgcatggatgtgggcgctgggctgac
tgagcagccttgtctaggttgccttggcattctcttaataagtcagagct
aagatgataagcgactcctggtattggttagctctttttttaaagggggc
atagaagactcttgtgcatataggatattatgcagcatttctatggccat
tgactattctttgtcaagaaagactagggtagaattaagaagtttctgaa
cacagttcttgtcatcatttcagagtcgagactcagcagttaccagtaat
atgatatgtggatatagattggtctgtgagtgtgacaggagagaaatgtc
cctaagttgaggctattctggaaattaagtttattc
gaattcattcttgcctagatagaggatgtgggagagaagataatgcaaat
gatgaactgtgaggtctctggctgtcattcccaaatcagcatctctagta
caagatcccttggggcccagggtcaaggttagctcagattcatttatgag
aaccataaaaatcacagttctttgagtttgagtgtctgtctcttgatagg
ctgatgttatatgaaatggggagacgtttggaaagcgagtggtggtattt
gaatttctacacccagtttctctccattcttagcaaaggtataatcttcc
acaatgatgtcctcccaaatagtaaacggagaaaagagaactgtattgtc
ttctgggtgacttgcttaacaccaattccttgtggctaaatgctgtgtga
accaggaaaaggaatggaccaagaacctagacctggtgctgatgcctcca
gaacacccaaagatattctttttgctctatttacttcttacaaaattcct
taattatgacagaagctatgtagcaaactcccgaaacatttttttcttca
aagatgacctccactagtaagagagagcaagatcctagactcagatatca
tgtttgcaggctaaagataccatgaactgaaggctaaagacctacattgt
gccttggcgtactcgagtgagctggaacttgctcacctcagtctgcttca
aaggtctgtcattcacacctggacactgttttgtttctgacactgtgtcc
ccttcaacttcaaataaacttcctgagtccaattagtagcttgcttgcct
tcttccctcttgtgttaaattacattcctagaagccataagtacaaggac
ataaccagctgtgttttttattttcctcaaagaattcaatctggaaattt
tttttcttcatctgagaatattgttccccaactcgatgtccttgtttgtt
actggtacaacaacctctctccaaagcctagaccagctctggataaacac
tgagtgatggggtacaaacgtgagtgagctcttaaaacacagcatgagaa
cagtcttcttaaattgcagctcactgcacatccggcagagccctgcaagg
tagtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_102406600_102407810
seq2: B6Ng01-205O06.b_47_1232

seq1  GAATTCTCAAGTCTCCAGAGGAGTGATGGAGTCACCCAAGGCCAGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGTCTCCAGAGGAGTGATGGAGTCACCCAAGGCCAGGAAAT  50

seq1  GTTCTGTCTATGGGGCCTAGAGTCGTATTCTTCTGCCCTGGCTCCAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCTATGGGGCCTAGAGTCGTATTCTTCTGCCCTGGCTCCAGCTG  100

seq1  TTAACCAGACCTTCCAGCAGGGAAGAAGGTTGTGTAGTGTGAAGAAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAGACCTTCCAGCAGGGAAGAAGGTTGTGTAGTGTGAAGAAGCAG  150

seq1  TAAAGGCAGCCGGACAGCTGTGGAGAGGTGCGGTGAGCAGCGGTGAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCAGCCGGACAGCTGTGGAGAGGTGCGGTGAGCAGCGGTGAGTGA  200

seq1  GGGGCTCCAGCAGCTTAACTGTTATCTCCCTGTTTCCTGCACCTTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCAGCAGCTTAACTGTTATCTCCCTGTTTCCTGCACCTTCCCTT  250

seq1  CCATTTTGTCTCAGAAGATTCATAAATGAAATAGAGTTTAAGGAAGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTCTCAGAAGATTCATAAATGAAATAGAGTTTAAGGAAGAAGT  300

seq1  CTCAGAAGTTTTCATCACATGAGACTAGATGGGATGGCTATGGAGGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGTTTTCATCACATGAGACTAGATGGGATGGCTATGGAGGCTTT  350

seq1  GGTGTACTCAGAAGCAATCTCTGAGAGTTAGAAGACAGCATATGGAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACTCAGAAGCAATCTCTGAGAGTTAGAAGACAGCATATGGAGGTC  400

seq1  CCAGCATGCTGTAGGTAACAGTGGCTTTCCTTGACATCTTCTGGGGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGCTGTAGGTAACAGTGGCTTTCCTTGACATCTTCTGGGGTGGT  450

seq1  CCTGACCAGCACCTGTGTTGTAACAAATGATGTGCTACTTCAACAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCAGCACCTGTGTTGTAACAAATGATGTGCTACTTCAACAGAGTA  500

seq1  TGGGACAGAAAGATTCTTGTTTTCACTCAGAGTCCCCAATCTTCAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGAAAGATTCTTGTTTTCACTCAGAGTCCCCAATCTTCAGACCA  550

seq1  ACCTCAATGGCCATCATATCCACTTATGTCTTCAATAGCATTGAAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAATGGCCATCATATCCACTTATGTCTTCAATAGCATTGAAAACTT  600

seq1  TGTGTTTTAAGATTCTACTAAGGGGGCATAATTCCCCTCTGCCTCTCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTAAGATTCTACTAAGGGGGCATAATTCCCCTCTGCCTCTCTGC  650

seq1  ATTTGTAAGTACAATCTGCTGAAGGAATTGTTTCTGTATCTAACCAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAGTACAATCTGCTGAAGGAATTGTTTCTGTATCTAACCAGGGC  700

seq1  CAGATAACGCTAAAGCAAACTGCTAGGACATTCCAGGACAGCGGAAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACGCTAAAGCAAACTGCTAGGACATTCCAGGACAGCGGAAGTGA  750

seq1  ATGCAGAATAGCAACGATGACAATGATGACAGCATCCAACTGTCTTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAATAGCAACGATGACAATGATGACAGCATCCAACTGTCTTTCCT  800

seq1  GTCTCGCTCATTTGTTTCTCCATATGCATGGATGTGGGCGCTGGGCTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGCTCATTTGTTTCTCCATATGCATGGATGTGGGCGCTGGGCTGAC  850

seq1  TGAGCAGCCTTGTCTAGGTTGCCTTGGCATTCTCTTAATAAGTCAGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCCTTGTCTAGGTTGCCTTGGCATTCTCTTAATAAGTCAGAGCT  900

seq1  AAGATGATAAGCGACTCCTGGTATTGGTTAGCTCTTTTTTTTAAAGGGGG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGATGATAAGCGACTCCTGGTATTGGTTAGCTC-TTTTTTTAAAGGGGG  949

seq1  CATAGAAGAACTCTTGTGCATATAGGATAATTATGCAGCAATTTCTAATG  1000
      |||||||| ||||||||||||||||||| |||||||||| |||||| |||
seq2  CATAGAAG-ACTCTTGTGCATATAGGAT-ATTATGCAGC-ATTTCT-ATG  995

seq1  GCCATTGACTATTCTTTGTCAAAAGAAAGACCTTAGGGTAGAAATAAAGA  1050
      ||||||||||||||||||||  |||||||||  |||||||| ||| ||||
seq2  GCCATTGACTATTCTTTGTC--AAGAAAGAC--TAGGGTAG-AATTAAGA  1040

seq1  AGTTTCTGAAACACAGT--CTGTCATCAATTTCAAGAGGTCGGAGGACTC  1098
      |||||||| ||||||||   ||||||| ||||| ||| ||||   |||||
seq2  AGTTTCTG-AACACAGTTCTTGTCATC-ATTTC-AGA-GTCG--AGACTC  1084

seq1  AGCAGTACACAAGGTTAATAATGATATGTGGATATAGATGTGTCCTGTGA  1148
      ||||||  || ||  |||| ||||||||||||||||||| ||  ||||| 
seq2  AGCAGT-TACCAG--TAAT-ATGATATGTGGATATAGAT-TGGTCTGTG-  1128

seq1  AAGTGTGACAGGAGAG-ATGGTCACCAAAATGTTGAGGCTATTTCTGAAT  1197
       ||||||||||||||| |  ||| | ||   |||||||||| ||||| | 
seq2  -AGTGTGACAGGAGAGAAATGTCCCTAA---GTTGAGGCTA-TTCTGGAA  1173

seq1  ATTAAGTTTTATTC  1211
      |||||| |||||||
seq2  ATTAAG-TTTATTC  1186

seq1: chr2_102489473_102490600
seq2: B6Ng01-205O06.g_66_1173 (reverse)

seq1  CCTCACTTTCCCTGGCAGGGCTCTGCCCGGATGTGCAGTTGAGGCCTGGC  50
      ||||||  | ||| ||||||||||| |||||||||||| ||||  || ||
seq2  CCTCAC--TACCTTGCAGGGCTCTG-CCGGATGTGCAG-TGAG--CT-GC  43

seq1  ATTTTAAGAAGACTG-TCTCAATGGCTGTGTTTTTAAGAGCTCACTTCAC  99
      | ||||||||||||| |||||   |||||| |||||||||||||| ||||
seq2  AATTTAAGAAGACTGTTCTCA--TGCTGTG-TTTTAAGAGCTCAC-TCAC  89

seq1  GTTTGTAACCCAATTCACTCAGTGTTTATCCAGAGGCTTGGTCTAGGCTT  149
      ||||||| ||||  |||||||||||||||||||||   ||||||||||||
seq2  GTTTGTACCCCA--TCACTCAGTGTTTATCCAGAG--CTGGTCTAGGCTT  135

seq1  TGGAGAGAGGTTGTTGTTAACCAAGTAAACAAAACAAGGACATCGAGTTG  199
      |||||||||||||||||  ||| |||||   |||||||||||||||||||
seq2  TGGAGAGAGGTTGTTGT--ACC-AGTAA--CAAACAAGGACATCGAGTTG  180

seq1  GGGAACAATATTCTCAGATGAAGAAAAAAAAAATTCCAGATTGAATTCTT  249
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  GGGAACAATATTCTCAGATGAAG-AAAAAAAATTTCCAGATTGAATTCTT  229

seq1  TGAGGAAAATAAAAAACACAGCTGGTTATGTCCTTGTACTTATGGCTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAATAAAAAACACAGCTGGTTATGTCCTTGTACTTATGGCTTCT  279

seq1  AGGAATGTAATTTAACACAAGAGGGAAGAAGGCAAGCAAGCTACTAATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTAATTTAACACAAGAGGGAAGAAGGCAAGCAAGCTACTAATTG  329

seq1  GACTCAGGAAGTTTATTTGAAGTTGAAGGGGACACAGTGTCAGAAACAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGAAGTTTATTTGAAGTTGAAGGGGACACAGTGTCAGAAACAAA  379

seq1  ACAGTGTCCAGGTGTGAATGACAGACCTTTGAAGCAGACTGAGGTGAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCCAGGTGTGAATGACAGACCTTTGAAGCAGACTGAGGTGAGCA  429

seq1  AGTTCCAGCTCACTCGAGTACGCCAAGGCACAATGTAGGTCTTTAGCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGCTCACTCGAGTACGCCAAGGCACAATGTAGGTCTTTAGCCTT  479

seq1  CAGTTCATGGTATCTTTAGCCTGCAAACATGATATCTGAGTCTAGGATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATGGTATCTTTAGCCTGCAAACATGATATCTGAGTCTAGGATCT  529

seq1  TGCTCTCTCTTACTAGTGGAGGTCATCTTTGAAGAAAAAAATGTTTCGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTCTTACTAGTGGAGGTCATCTTTGAAGAAAAAAATGTTTCGGG  579

seq1  AGTTTGCTACATAGCTTCTGTCATAATTAAGGAATTTTGTAAGAAGTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTACATAGCTTCTGTCATAATTAAGGAATTTTGTAAGAAGTAAA  629

seq1  TAGAGCAAAAAGAATATCTTTGGGTGTTCTGGAGGCATCAGCACCAGGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAAAAAGAATATCTTTGGGTGTTCTGGAGGCATCAGCACCAGGTC  679

seq1  TAGGTTCTTGGTCCATTCCTTTTCCTGGTTCACACAGCATTTAGCCACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTTGGTCCATTCCTTTTCCTGGTTCACACAGCATTTAGCCACAA  729

seq1  GGAATTGGTGTTAAGCAAGTCACCCAGAAGACAATACAGTTCTCTTTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGTGTTAAGCAAGTCACCCAGAAGACAATACAGTTCTCTTTTCT  779

seq1  CCGTTTACTATTTGGGAGGACATCATTGTGGAAGATTATACCTTTGCTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTACTATTTGGGAGGACATCATTGTGGAAGATTATACCTTTGCTAA  829

seq1  GAATGGAGAGAAACTGGGTGTAGAAATTCAAATACCACCACTCGCTTTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAGAGAAACTGGGTGTAGAAATTCAAATACCACCACTCGCTTTCC  879

seq1  AAACGTCTCCCCATTTCATATAACATCAGCCTATCAAGAGACAGACACTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCTCCCCATTTCATATAACATCAGCCTATCAAGAGACAGACACTC  929

seq1  AAACTCAAAGAACTGTGATTTTTATGGTTCTCATAAATGAATCTGAGCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAGAACTGTGATTTTTATGGTTCTCATAAATGAATCTGAGCTA  979

seq1  ACCTTGACCCTGGGCCCCAAGGGATCTTGTACTAGAGATGCTGATTTGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACCCTGGGCCCCAAGGGATCTTGTACTAGAGATGCTGATTTGGG  1029

seq1  AATGACAGCCAGAGACCTCACAGTTCATCATTTGCATTATCTTCTCTCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGCCAGAGACCTCACAGTTCATCATTTGCATTATCTTCTCTCCC  1079

seq1  ACATCCTCTATCTAGGCAAGAATGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  ACATCCTCTATCTAGGCAAGAATGAATTC  1108