BAC Information

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BAC

Clone NameB6Ng01-206N13
Chromosome2 (Build37)
Map Location 83,646,222 - 83,873,647
singlet/doubletdoublet
Overlap geneD430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1
Downstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206N13.bB6Ng01-206N13.g
ACCGA026156GA026157
length1,0781,020
definitionB6Ng01-206N13.b B6Ng01-206N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,646,222 - 83,647,302)(83,872,645 - 83,873,647)
sequence
gaattctggggagagcctcaaggagaaggaaaggaagttgttctagagtc
tctgtgtgtggccattgcctatctctgtgtcaccttgttcttactcgtgg
ctagcttgtacatttaatttgatgagtaaggggagatgaccaaaatgtat
tatgggatctaaaaagacaaatacaattgcttgatgtctagtaatttgta
aaggtttctttggacttggtccttttatttgaaccatgaacctgtggcta
tgccatctgcagtatacactggcattcattataatttctgatatgtcatg
gacttcctgtgaggtactgaatctttgaattttgttgtcattgttcttaa
gtgcaatataacaatgtaacgaaacttaaatataagtcactatttagtaa
tcttaatccgaaatttattagtatttttttgttagcagaaaagaacaact
ctgctgtagttgtagatatataggtgaaattttttgttttttgctttttc
tttgcttttttttttttgtttgtttgttttttttacctctaaaccatcca
atctgcattttattttaggtggaagatgaactattccttaccagttttaa
aacactttcagtatattaaggtaacttggaagctgtgtgtatcaaattct
tttgctcgctaagtaacctggaagataattttttttggcttctctcgtga
tcacccacattgggtgagacataagatgagtctctcctgaaatctgtcat
ttgctaacttgttttgagttagtaaaagcaggtaccatgttctgctttgt
ttccagtgtgtaacttgtgactgtacaataacttgaacgtgtggtgccag
cttcctgtgtggattctatcctctcctatgagctcatgtttcctaattac
gggaaccagcgatactgcatcaaacagtgacttcagggtggtgacacagc
ctccctacaagtgcaaagatttaagggtataagttatctaaagaagggac
aacaaactaaaggcaaagggagcctggtgttagacccattctcggaggag
aatacattctttagcgtttcaatgcctt
gaattcaaaaaagggcagcaacctggaggcaggaactgatacaaaaggtc
ccaagaagtactggtttttcactttctagccaaggcttgctcactctgct
ttgttatacaccccaagtccacatacctaaggtggcactacctacaatga
ggtaggccctaccatatcaatcattaattagaaaaatgcaccacaatctt
gcgcacaggccaatctgatgggtacagtttctaaagtcaggtttcctctt
ccaaataactttagcttatgtcaagttgacataaaactagccagcacagc
aaaattggtgaataaaacaaatatctggtggaatagagaagtacacacac
acacacacacacacacacacacacacacacacacattaaaattttaaaaa
atgtttatttgattttaacatttagaaagagaattgaataatgcccaaag
catctaggacattgttgaaggaatgatagctgacatgctataacaggaac
aagtcaccaaagacaatgaactccagaagctgaggcacaaaacagtttat
gcacagggacatggaagttacccaaggtaagggcagaaaggtagaaaaga
ctgtgagtccactctgtacttgaaaatgatcataaaaagtataaaccaag
tgctggagatcctccttaaatactgcacaacaacgcttttgaagcaaact
aaaaaaaaaaaaaaaaaaagattctatggctattcatttaaaaatcagag
ccagcagatggctcagtgggctgtctgacaacctaattttatccccaggt
cccatatggtgtagaggaattttaatccagcagcacggcctatctagcag
gggatcctcatcccaaagaccttttaaggtctataatgaatatggccagg
aatgtaagacactcccctaaatacaaatatggatctgggctggaatacac
acataacccttgggttaacaccttataaatccttaacatgaaggtaatgg
tcaattttgtagaagaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83646222_83647302
seq2: B6Ng01-206N13.b_48_1125

seq1  GAATTCTGGGGAGAGCCTCAAGGAGAAGGAAAGGAAGTTGTTCTAGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGAGAGCCTCAAGGAGAAGGAAAGGAAGTTGTTCTAGAGTC  50

seq1  TCTGTGTGTGGCCATTGCCTATCTCTGTGTCACCTTGTTCTTACTCGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGGCCATTGCCTATCTCTGTGTCACCTTGTTCTTACTCGTGG  100

seq1  CTAGCTTGTACATTTAATTTGATGAGTAAGGGGAGATGACCAAAATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTGTACATTTAATTTGATGAGTAAGGGGAGATGACCAAAATGTAT  150

seq1  TATGGGATCTAAAAAGACAAATACAATTGCTTGATGTCTAGTAATTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGATCTAAAAAGACAAATACAATTGCTTGATGTCTAGTAATTTGTA  200

seq1  AAGGTTTCTTTGGACTTGGTCCTTTTATTTGAACCATGAACCTGTGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTTTGGACTTGGTCCTTTTATTTGAACCATGAACCTGTGGCTA  250

seq1  TGCCATCTGCAGTATACACTGGCATTCATTATAATTTCTGATATGTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTGCAGTATACACTGGCATTCATTATAATTTCTGATATGTCATG  300

seq1  GACTTCCTGTGAGGTACTGAATCTTTGAATTTTGTTGTCATTGTTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTGTGAGGTACTGAATCTTTGAATTTTGTTGTCATTGTTCTTAA  350

seq1  GTGCAATATAACAATGTAACGAAACTTAAATATAAGTCACTATTTAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATATAACAATGTAACGAAACTTAAATATAAGTCACTATTTAGTAA  400

seq1  TCTTAATCCGAAATTTATTAGTATTTTTTTGTTAGCAGAAAAGAACAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCCGAAATTTATTAGTATTTTTTTGTTAGCAGAAAAGAACAACT  450

seq1  CTGCTGTAGTTGTAGATATATAGGTGAAATTTTTTGTTTTTTGCTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTAGTTGTAGATATATAGGTGAAATTTTTTGTTTTTTGCTTTTTC  500

seq1  TTTGCTTTTTTTTTTTTGTTTGTTTGTTTTTTTTACCTCTAAACCATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTTTTTTTTTGTTTGTTTGTTTTTTTTACCTCTAAACCATCCA  550

seq1  ATCTGCATTTTATTTTAGGTGGAAGATGAACTATTCCTTACCAGTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATTTTATTTTAGGTGGAAGATGAACTATTCCTTACCAGTTTTAA  600

seq1  AACACTTTCAGTATATTAAGGTAACTTGGAAGCTGTGTGTATCAAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTCAGTATATTAAGGTAACTTGGAAGCTGTGTGTATCAAATTCT  650

seq1  TTTGCTCGCTAAGTAACCTGGAAGATAATTTTTTTTGGCTTCTCTCGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCGCTAAGTAACCTGGAAGATAATTTTTTTTGGCTTCTCTCGTGA  700

seq1  TCACCCACATTGGGTGAGACATAAGATGAGTCTCTCCTGAAATCTGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACATTGGGTGAGACATAAGATGAGTCTCTCCTGAAATCTGTCAT  750

seq1  TTGCTAACTTGTTTTGAGTTAGTAAAAGCAGGTACCATGTTCTGCTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACTTGTTTTGAGTTAGTAAAAGCAGGTACCATGTTCTGCTTTGT  800

seq1  TTCCAGTGTGTAACTTGTGACTGTACAATAAACTTGAACGTGTGGTGCCA  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCCAGTGTGTAACTTGTGACTGTACAAT-AACTTGAACGTGTGGTGCCA  849

seq1  GCTTCCTGTGTGGATTCTATCCTCTCCTATGAGCTCATGTTTCCTAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGTGTGGATTCTATCCTCTCCTATGAGCTCATGTTTCCTAATTA  899

seq1  CGGGAACCAGCGATACTGCATCAAACAGTGACTTCAGGGTGGTGACACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAACCAGCGATACTGCATCAAACAGTGACTTCAGGGTGGTGACACAG  949

seq1  -CTCCCTACAAGTGCAAAGATTTAAGGGTAT-AGTTATCTAAAGGAAGGG  998
       |||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  CCTCCCTACAAGTGCAAAGATTTAAGGGTATAAGTTATCTAAA-GAAGGG  998

seq1  AACCAACAAACAAAAGGCAAAGGGAGCCTGGTGTTAAGACACATTCCTCG  1048
      |  |||||||| ||||||||||||||||||||||| |||| |||| ||||
seq2  A--CAACAAACTAAAGGCAAAGGGAGCCTGGTGTT-AGACCCATT-CTCG  1044

seq1  GAAGGAG-ATACATTC-TTAGCGTTTCAGTGCCTT  1081
      | ||||| |||||||| ||||||||||| ||||||
seq2  G-AGGAGAATACATTCTTTAGCGTTTCAATGCCTT  1078

seq1: chr2_83872645_83873647
seq2: B6Ng01-206N13.g_69_1088 (reverse)

seq1  GCTTTCTTCTACAAA--TTAACATTACCTTCATTGTTAGGGATT--TAAA  46
      |||||||||||||||  | | ||||||||||| ||||| |||||  ||| 
seq2  GCTTTCTTCTACAAAATTGACCATTACCTTCA-TGTTAAGGATTTATAAG  49

seq1  GTGTTTA-CCAAGGG-TATGTGTGTATTCCAG-CCAGAT-CATA-TTGTA  91
      ||||| | ||||||| |||||||||||||||| |||||| |||| |||||
seq2  GTGTTAACCCAAGGGTTATGTGTGTATTCCAGCCCAGATCCATATTTGTA  99

seq1  ATTTAGGGAGTGTC-TACATT-CTGGCCATA-TCA-TATAGACC-TAAAA  136
       ||  ||||||||| |||||| ||||||||| ||| |||||||| |||||
seq2  TTTAGGGGAGTGTCTTACATTCCTGGCCATATTCATTATAGACCTTAAAA  149

seq1  GGTCTTT-GGATGA-GATCCCTTGCTAGATA-GCCGTGCTGCTGGATTAA  183
      ||||||| |||||| |||||| ||||||||| ||||||||||||||||||
seq2  GGTCTTTGGGATGAGGATCCCCTGCTAGATAGGCCGTGCTGCTGGATTAA  199

seq1  AATTCCTCTACACCATATGGGACCTGGGGATAAAATTAGGTTGTCAGACA  233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTCTACACCATATGGGACCTGGGGATAAAATTAGGTTGTCAGACA  249

seq1  GCCCACTGAGCCATCTGCTGGCTCTGATTTTTAAATGAATAGCCATAGAA  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGAGCCATCTGCTGGCTCTGATTTTTAAATGAATAGCCATAGAA  299

seq1  TCTTTTTTTTTTTTTTTTTTTAGTTTGCTTCAAAAGCGTTGTTGTGCAGT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTTTTAGTTTGCTTCAAAAGCGTTGTTGTGCAGT  349

seq1  ATTTAAGGAGGATCTCCAGCACTTGGTTTATAC-TTTTATGATCATTTTC  382
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTTAAGGAGGATCTCCAGCACTTGGTTTATACTTTTTATGATCATTTTC  399

seq1  AAGTACAGAGTGGACTCACAGTCTTTTCTACCTTTCTGCCCTTACCTTGG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGAGTGGACTCACAGTCTTTTCTACCTTTCTGCCCTTACCTTGG  449

seq1  GTAACTTCCATGTCCCTGTGCATAAACTGTTTTGTGCCTCAGCTTCTGGA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCCATGTCCCTGTGCATAAACTGTTTTGTGCCTCAGCTTCTGGA  499

seq1  GTTCATTGTCTTTGGTGACTTGTTCCTGTTATAGCATGTCAGCTATCATT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGTCTTTGGTGACTTGTTCCTGTTATAGCATGTCAGCTATCATT  549

seq1  CCTTCAACAATGTCCTAGATGCTTTGGGCATTATTCAATTCTCTTTCTAA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAACAATGTCCTAGATGCTTTGGGCATTATTCAATTCTCTTTCTAA  599

seq1  ATGTTAAAATCAAATAAACATTTTTTAAAATTTTAATGTGTGTGTGTGTG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAATCAAATAAACATTTTTTAAAATTTTAATGTGTGTGTGTGTG  649

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTCTCTATTCCACCAGATA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTCTCTATTCCACCAGATA  699

seq1  TTTGTTTTATTCACCAATTTTGCTGTGCTGGCTAGTTTTATGTCAACTTG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTATTCACCAATTTTGCTGTGCTGGCTAGTTTTATGTCAACTTG  749

seq1  ACATAAGCTAAAGTTATTTGGAAGAGGAAACCTGACTTTAGAAACTGTAC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGCTAAAGTTATTTGGAAGAGGAAACCTGACTTTAGAAACTGTAC  799

seq1  CCATCAGATTGGCCTGTGCGCAAGATTGTGGTGCATTTTTCTAATTAATG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGATTGGCCTGTGCGCAAGATTGTGGTGCATTTTTCTAATTAATG  849

seq1  ATTGATATGGTAGGGCCTACCTCATTGTAGGTAGTGCCACCTTAGGTATG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATGGTAGGGCCTACCTCATTGTAGGTAGTGCCACCTTAGGTATG  899

seq1  TGGACTTGGGGTGTATAACAAAGCAGAGTGAGCAAGCCTTGGCTAGAAAG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGGGGTGTATAACAAAGCAGAGTGAGCAAGCCTTGGCTAGAAAG  949

seq1  TGAAAAACCAGTACTTCTTGGGACCTTTTGTATCAGTTCCTGCCTCCAGG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACCAGTACTTCTTGGGACCTTTTGTATCAGTTCCTGCCTCCAGG  999

seq1  TTGCTGCCCTTTTTTGAATTC  1003
      |||||||||||||||||||||
seq2  TTGCTGCCCTTTTTTGAATTC  1020