BAC Information

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BAC

Clone NameB6Ng01-207C19
Chromosome3 (Build37)2 (Build37)
Map Location 142,613,127 - 142,614,31713,539,915 - 13,540,054
singlet/doubletsingletsinglet
Overlap geneLOC100040053
Upstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
Downstream geneLOC100039883, 1700001N15Rik, EG668889, EG621809, LOC100039938
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207C19.bB6Ng01-207C19.g
ACCGA026399GA026400
length1,181942
definitionB6Ng01-207C19.b B6Ng01-207C19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,613,127 - 142,614,317)(13,539,915 - 13,540,054)
sequence
gaattcaaaaccaggggccagtggttaagagcactggctgctcttccaga
gggttcagtactcagcacccacatggtggctcacagctgtctataactcc
agttctagggcatctgataccctcgcctgcaagcaaaacaccaaagcaca
taaaatatgataaataattttaaagttcaaagtctctttaaaatattcaa
actttctcttaaaaatccaaagtctttgtgaaactccaaaaatctcttta
aaagtttaaaagtctctcaactgtggtttcctgtaaaattaattaattaa
ttggttaattaattaataattaatttctcggttcatgagggaagaaccaa
ggcacagccacaatctgaacacattactatgacaaagggaacaggcaaat
gtgtctaagggtatggcacacttggtagcaagcacccagcacccagcacc
cagcatccacagttcagcccccagcacttctgaagtggggatgagaagtt
cagagtgatccttagtgtataagaaatcccaggccagcctaggctagaga
ccttgtctcaaaaaacaaatgcatgtacagaataataccacatagataaa
ctcttgacaccaatatgatacaatgctatgtatacaatcagatgtgataa
actgaacatatacaaatgctgtgtagtttcaaagttccccagagaactat
agaaacaacgaagccttatagtaaggaaatcatgataacaacttaaccta
gttatactattatctatgagttcccttacatgaagtctttctttgattcg
tccctttgtctgtccctctgggtactaagggtgtgtctgtagtccagcta
aaaggattaaaggtgtgtagcatgtctgcattccagccagatcacacaga
tctagaaggtcttaggaagggatcagagcagccctgttgctggattaaaa
ttcctctgtgcctcctacatcagttaacaatcaacagcccctcccagaca
tctgatggtgacattattcagttgagttcactttccacgtgtccacacca
acaaacaccaggagccacatgatagaacagatgtaacagttgcaagatgc
ctgtgctcttgtaagggatcctgctcaatgcctcaacctcacttcagtca
tcgaaaactttaccaacagtaaagaggaacg
gaattctcacccgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatggactcctccattgttggtgggattacaagcttg
tacaaccactctggaaatcagtctggcggttcctcagaaaattggacata
gtactaccggaggatccagcaatacctctcctgggcatatatccaaaaga
tgtcccaacgggtaagaaggacacatgctccactatgttcatagcagcct
tatttgtaatagccagaagctggaaagaacccagatgcccctcaacagag
gaatggatacaaaaaatgtggtacatctacacagtggagtactactcagc
tattaaaaagaatgaatttatgaaattcctaggcaaatggatggacccgg
agagcatcatcctgagtgaggtaacacaatcacaaaagaactcaaatgat
atgtactcactgataagaggatattagcctagaaacttagtatagcgaga
tataaggtacaatttgcaaaacacatgaaactgaagaggaacgaagacca
aagtgtggacactttgccccttcttagaattggaaacaagggctggagag
atggctcagcagttaagagcactgactgctcttccgaaggtcctgagttc
aaatcccagcaaccacatggtggctcacaaccatccgtaatgagatctgg
cgccctcctctggtgtgtctgaagacagctacagtgtacttacatgtaat
aaatatgtaaattattaaaaaaaaaaaaagaattggaaacatcacccatg
ggaaggagttacagagacagtttggagctgagacaaaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142613127_142614317
seq2: B6Ng01-207C19.b_44_1224 (reverse)

seq1  CGTTCCTCTTTTTCTGTTTGTAAATGTTTTCTGATGACTGAAGTGAGGTT  50
      |||||||| ||| ||||| ||||| |||||| ||||||||||||||||||
seq2  CGTTCCTC-TTTACTGTTGGTAAA-GTTTTC-GATGACTGAAGTGAGGTT  47

seq1  GAGCATTTGAGGCAAGAACCC-TAC-AGAGCAACAGGCATCCTGCAACTG  98
      |||   |||| ||| || ||| ||| ||||| ||||||||| ||||||||
seq2  GAGGCATTGA-GCAGGATCCCTTACAAGAGC-ACAGGCATCTTGCAACTG  95

seq1  -TACATCTG-TCTATCATTGTGCTCCTTGGTGTTTGTTGGTGT-GACACG  145
       |||||||| ||||||||   ||||| |||||||||||||||| ||||||
seq2  TTACATCTGTTCTATCATGTGGCTCC-TGGTGTTTGTTGGTGTGGACACG  144

seq1  GTTGGGAAAGTGGAACCTCAACTGAATAATTGTCACCATCAGATTGGTCT  195
          ||||||||  | ||||||||||||| ||||||||||||||  ||||
seq2  ---TGGAAAGTG--AACTCAACTGAATAA-TGTCACCATCAGAT--GTCT  186

seq1  GGGAGGGGCTTGTTGATTGTTAACTGATGTAGGAGGCACAGAGGAATTTT  245
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGC-TGTTGATTGTTAACTGATGTAGGAGGCACAGAGGAATTTT  235

seq1  AATCCAGCAACAGGGCTGCTCTGATCCCTTCCTAAGACCTTCTAGATCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCAACAGGGCTGCTCTGATCCCTTCCTAAGACCTTCTAGATCTG  285

seq1  TGTGATCTGGCTGGAATGCAGACATGCTACACACCTTTAATCCTTTTAGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTGGCTGGAATGCAGACATGCTACACACCTTTAATCCTTTTAGC  335

seq1  TGGACTACAGACACACCCTTAGTACCCAGAGGGACAGACAAAGGGACGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTACAGACACACCCTTAGTACCCAGAGGGACAGACAAAGGGACGAA  385

seq1  TCAAAGAAAGACTTCATGTAAGGGAACTCATAGATAATAGTATAACTAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAAGACTTCATGTAAGGGAACTCATAGATAATAGTATAACTAGG  435

seq1  TTAAGTTGTTATCATGATTTCCTTACTATAAGGCTTCGTTGTTTCTATAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTGTTATCATGATTTCCTTACTATAAGGCTTCGTTGTTTCTATAG  485

seq1  TTCTCTGGGGAACTTTGAAACTACACAGCATTTGTATATGTTCAGTTTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGGAACTTTGAAACTACACAGCATTTGTATATGTTCAGTTTAT  535

seq1  CACATCTGATTGTATACATAGCATTGTATCATATTGGTGTCAAGAGTTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGATTGTATACATAGCATTGTATCATATTGGTGTCAAGAGTTTA  585

seq1  TCTATGTGGTATTATTCTGTACATGCATTTGTTTTTTGAGACAAGGTCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGGTATTATTCTGTACATGCATTTGTTTTTTGAGACAAGGTCTC  635

seq1  TAGCCTAGGCTGGCCTGGGATTTCTTATACACTAAGGATCACTCTGAACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAGGCTGGCCTGGGATTTCTTATACACTAAGGATCACTCTGAACT  685

seq1  TCTCATCCCCACTTCAGAAGTGCTGGGGGCTGAACTGTGGATGCTGGGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCCCACTTCAGAAGTGCTGGGGGCTGAACTGTGGATGCTGGGTG  735

seq1  CTGGGTGCTGGGTGCTTGCTACCAAGTGTGCCATACCCTTAGACACATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGCTGGGTGCTTGCTACCAAGTGTGCCATACCCTTAGACACATTT  785

seq1  GCCTGTTCCCTTTGTCATAGTAATGTGTTCAGATTGTGGCTGTGCCTTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTCCCTTTGTCATAGTAATGTGTTCAGATTGTGGCTGTGCCTTGG  835

seq1  TTCTTCCCTCATGAACCGAGAAATTAATTATTAATTAATTAACCAATTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTCATGAACCGAGAAATTAATTATTAATTAATTAACCAATTAA  885

seq1  TTAATTAATTTTACAGGAAACCACAGTTGAGAGACTTTTAAACTTTTAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATTTTACAGGAAACCACAGTTGAGAGACTTTTAAACTTTTAAA  935

seq1  GAGATTTTTGGAGTTTCACAAAGACTTTGGATTTTTAAGAGAAAGTTTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTGGAGTTTCACAAAGACTTTGGATTTTTAAGAGAAAGTTTGA  985

seq1  ATATTTTAAAGAGACTTTGAACTTTAAAATTATTTATCATATTTTATGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAGAGACTTTGAACTTTAAAATTATTTATCATATTTTATGTG  1035

seq1  CTTTGGTGTTTTGCTTGCAGGCGAGGGTATCAGATGCCCTAGAACTGGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGTTTTGCTTGCAGGCGAGGGTATCAGATGCCCTAGAACTGGAG  1085

seq1  TTATAGACAGCTGTGAGCCACCATGTGGGTGCTGAGTACTGAACCCTCTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACAGCTGTGAGCCACCATGTGGGTGCTGAGTACTGAACCCTCTG  1135

seq1  GAAGAGCAGCCAGTGCTCTTAACCACTGGCCCCTGGTTTTGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGCCAGTGCTCTTAACCACTGGCCCCTGGTTTTGAATTC  1181

seq1: chr2_13539915_13540054
seq2: B6Ng01-207C19.g_752_891 (reverse)

seq1  CTGTCTTCAGACACACCAGAAGAGGGTGTTAAATCTCATTACAGATGGTT  50
      |||||||||||||||||||| ||||| |  | |||||||||| |||||||
seq2  CTGTCTTCAGACACACCAGAGGAGGGCGCCAGATCTCATTACGGATGGTT  50

seq1  GATGGCCACCATGTGGTTGCTGGGATTTAAACTTAGAACCTTTGGAAGAG  100
      |   |||||||||||||||||||||||| |||| || ||||| |||||||
seq2  GTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAG  100

seq1  CAGTCAGTGCTCTTAACTGCTGTGCCATCTCTCCAGCCCT  140
      |||||||||||||||||||||| |||||||||||||||||
seq2  CAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCT  140