BAC Information

Click to search

BAC

Clone NameB6Ng01-207P20
Chromosome2 (Build37)
Map Location 154,617,985 - 154,757,967
singlet/doubletdoublet
Overlap geneRaly, Eif2s2
Upstream geneEG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692
Downstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207P20.bB6Ng01-207P20.g
ACCGA026989GA026990
length1,0911,010
definitionB6Ng01-207P20.b B6Ng01-207P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,756,901 - 154,757,967)(154,617,985 - 154,618,997)
sequence
gaattcacttggagaaaaaaaatcctaaacatgaaacattcccatttgtt
tgcattttgtcgcaagtgtgggagggtgaaggatgtgactcttctcttgt
ttagaaataattctgtagccagagtcccaggctccaggctccactgtctt
cctggtttactctgctctccagggccatcagaagtcattcaaagcaacag
tcagtaggtgggcttttagaaggggaaattttgctatttgaaatagtttc
cttatgtcttatggcagctcgtcttgacatttgtatctagggcagcatct
gcaatgacatttggcttggtgtctatgttaagtcaattcaaacattaatt
agaaagcgccacccttggcgttactataataaaggatatggacaacattt
tgttcaaccctgtaacgtcactggctgctttaagcctgaccacagccagg
tcagacagcagctgactaatgctcatagctcaagaccaagaagataccag
gagaggaaagcaggaggtagaaaccagtcaggtaggaaagggacacagtc
atggtttgaataacacttggtctcccagttgctaccatagtttggaggag
ttatggaaccttttggaggtggggacttttgagggaagtgggtcactcag
ggtgggcttttcagggtttacagcctcgacctatttcctgctcttgcttt
ctctgcctcctgtgtgcccttgatgtgacttcttatctcccttctcgtgc
caacatggcttctctaccattatggacatctaagcctctggaactaaata
aagccttttctttcctcaggtaactgtcagagttttattgcagcagcagc
aacagctacaaaaacaaaacaaaaatcaattattatatagacccccaaag
aatcagctctgggaaaatgttcttccttagaggtcaggtattagcaaaag
aagcactccagtgccttacttccttgttacctccttggtccttagtctag
ggagctacccacagggatgtggaattaatctgtcagcaagccttcttgta
catctgatcagacctagcctggactgggaccagctcatgct
gaattcagggagggagttagtacagggcagaagcgttaaatgccaacagg
taacgtttaacgagactgacccaggaacttcgtgaatgtatcgcctcatg
tccacaccggtcttccagagctgtccctgctcacaggagcagaaatcaag
gttcagagacatgaaaccgccgtagaagtacaaagctgttagtaaccgtt
acttatttcctgataggaaatctctttgtgcagagggcattttgatttac
cgttagtcttaacaccgtataggtaagaaaggtaggctcctctctgagac
attgactgagagacagggactgatctgccatagataaaatctccttttgt
tgctatcagaactctgagggaaagtggttaggaggaaatgtttttgctgg
tgttgtgcttagactggtccagagatcttaagtctcaaacatagttctga
ggtgtttagcttcaggacctcacggaagtccaccctttactttgtttatt
gcatgtctccatcatccccccacctcagtcctagcgatcagtcagtcaga
aatgtaggcagctccagtcatctttaactccctgccttcagatagtgtta
tttttcttttgtcttccaacatggcctagagggattaaagagagctaaac
ttaactttggcacctgttttccttttgcagtgtgtttgcagtgagtttga
tactggctgctgggatctggttcttgagaaggttcacaggtttgcattag
ttccttggacctgtaggtctactgtgtttcctccatcccttcagagtcta
ggatacagtaatggtggaacataggaggttgatggctcgataaccacccc
ttctttccgttttttctgacctttggaaagggggatgtcatctgaaatgg
actaccttggtgattactaaattcctagtagccttctttgagtctgtttt
gttgtacacctcctgtacaatggcatttcctgagtatggagctacccttc
aggcctaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154756901_154757967
seq2: B6Ng01-207P20.b_47_1137 (reverse)

seq1  AGCATGAGCTG--TCCAGTCCA-GCT-GGTCTGATCAGATGTCCAGGA--  44
      |||||||||||   |||||||| ||| ||||||||||||||| || ||  
seq2  AGCATGAGCTGGTCCCAGTCCAGGCTAGGTCTGATCAGATGTACAAGAAG  50

seq1  GCTTGCTTGCAGTTTA--TTCACATCCCTGTGTGTAGCT-CCTAGACTA-  90
      |||||||  ||| |||  | |||||||||||| |||||| ||||||||| 
seq2  GCTTGCTGACAGATTAATTCCACATCCCTGTGGGTAGCTCCCTAGACTAA  100

seq1  -GGCCAA-GAGGTAACAAGGAAGT-AGGCACTGGAGTGC-TCTTTTGCT-  135
       | |||| |||||||||||||||| |||||||||||||| ||||||||| 
seq2  GGACCAAGGAGGTAACAAGGAAGTAAGGCACTGGAGTGCTTCTTTTGCTA  150

seq1  ATACCTGACCTCT-AGGAAGAACATTT--CCAGAGCTGATTCTTTGGGG-  181
      ||||||||||||| |||||||||||||  |||||||||||||||||||| 
seq2  ATACCTGACCTCTAAGGAAGAACATTTTCCCAGAGCTGATTCTTTGGGGG  200

seq1  --TCTATAATAATTGATTTTTGTTTTG-TTTTGTTGCTGTTGCTGCTGCT  228
        | ||||||||||||||||||||||| |||||| |||||||||||||||
seq2  TCTATATAATAATTGATTTTTGTTTTGTTTTTGTAGCTGTTGCTGCTGCT  250

seq1  GCAATAAAACTCTGACAGTTACCTGAGG-AAGAAAAGGCTTTATTTAGTT  277
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAATAAAACTCTGACAGTTACCTGAGGAAAGAAAAGGCTTTATTTAGTT  300

seq1  CCAGAGGCTTAGATGTCCATAATGGTAGAGAAGCCATGTTGGCACGAGAA  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCTTAGATGTCCATAATGGTAGAGAAGCCATGTTGGCACGAGAA  350

seq1  GGGAGATAAGAAGTCACATCAAGGGCACACAGGAGGCAGAGAAAGCAAGA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATAAGAAGTCACATCAAGGGCACACAGGAGGCAGAGAAAGCAAGA  400

seq1  GCAGGAAATAGGTCGAGGCTGTAAACCCTG-AAAGCCCACCCTGAGTGAC  426
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCAGGAAATAGGTCGAGGCTGTAAACCCTGAAAAGCCCACCCTGAGTGAC  450

seq1  CCACTTCCCTCAAAAGTCCCCACCTCCAAAAGGTTCCATAACTCCTCCAA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCCTCAAAAGTCCCCACCTCCAAAAGGTTCCATAACTCCTCCAA  500

seq1  ACTATGGTAGCAACTGGGAGACCAAGTGTTATTCAAACCATGACTGTGTC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGTAGCAACTGGGAGACCAAGTGTTATTCAAACCATGACTGTGTC  550

seq1  CCTTTCCTACCTGACTGGTTTCTACCTCCTGCTTTCCTCTCCTGGTATCT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTACCTGACTGGTTTCTACCTCCTGCTTTCCTCTCCTGGTATCT  600

seq1  TCTTGGTCTTGAGCTATGAGCATTAGTCAGCTGCTGTCTGACCTGGCTGT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCTTGAGCTATGAGCATTAGTCAGCTGCTGTCTGACCTGGCTGT  650

seq1  GGTCAGGCTTAAAGCAGCCAGTGACGTTACAGGGTTGAACAAAATGTTGT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCTTAAAGCAGCCAGTGACGTTACAGGGTTGAACAAAATGTTGT  700

seq1  CCATATCCTTTATTATAGTAACGCCAAGGGTGGCGCTTTCTAATTAATGT  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCTTTATTATAGTAACGCCAAGGGTGGCGCTTTCTAATTAATGT  750

seq1  TTGAATTGACTTAACATAGACACCAAGCCAAATGTCATTGCAGATGCTGC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGACTTAACATAGACACCAAGCCAAATGTCATTGCAGATGCTGC  800

seq1  CCTAGATACAAATGTCAAGACGAGCTGCCATAAGACATAAGGAAACTATT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATACAAATGTCAAGACGAGCTGCCATAAGACATAAGGAAACTATT  850

seq1  TCAAATAGCAAAATTTCCCCTTCTAAAAGCCCACCTACTGACTGTTGCTT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGCAAAATTTCCCCTTCTAAAAGCCCACCTACTGACTGTTGCTT  900

seq1  TGAATGACTTCTGATGGCCCTGGAGAGCAGAGTAAACCAGGAAGACAGTG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACTTCTGATGGCCCTGGAGAGCAGAGTAAACCAGGAAGACAGTG  950

seq1  GAGCCTGGAGCCTGGGACTCTGGCTACAGAATTATTTCTAAACAAGAGAA  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGAGCCTGGGACTCTGGCTACAGAATTATTTCTAAACAAGAGAA  1000

seq1  GAGTCACATCCTTCACCCTCCCACACTTGCGACAAAATGCAAACAAATGG  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACATCCTTCACCCTCCCACACTTGCGACAAAATGCAAACAAATGG  1050

seq1  GAATGTTTCATGTTTAGGATTTTTTTTCTCCAAGTGAATTC  1067
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTCATGTTTAGGATTTTTTTTCTCCAAGTGAATTC  1091

seq1: chr2_154617985_154618997
seq2: B6Ng01-207P20.g_68_1077

seq1  GAATTCAGGGAGGGAGTTAGTACAGGGCAGAAGCGTTAAATGCCAACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGGGAGTTAGTACAGGGCAGAAGCGTTAAATGCCAACAGG  50

seq1  TAACGTTTAACGAGACTGACCCAGGAACTTCGTGAATGTATCGCCTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTTAACGAGACTGACCCAGGAACTTCGTGAATGTATCGCCTCATG  100

seq1  TCCACACCGGTCTTCCAGAGCTGTCCCTGCTCACAGGAGCAGAAATCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCGGTCTTCCAGAGCTGTCCCTGCTCACAGGAGCAGAAATCAAG  150

seq1  GTTCAGAGACATGAAACCGCCGTAGAAGTACAAAGCTGTTAGTAACCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGACATGAAACCGCCGTAGAAGTACAAAGCTGTTAGTAACCGTT  200

seq1  ACTTATTTCCTGATAGGAAATCTCTTTGTGCAGAGGGCATTTTGATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTCCTGATAGGAAATCTCTTTGTGCAGAGGGCATTTTGATTTAC  250

seq1  CGTTAGTCTTAACACCGTATAGGTAAGAAAGGTAGGCTCCTCTCTGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTCTTAACACCGTATAGGTAAGAAAGGTAGGCTCCTCTCTGAGAC  300

seq1  ATTGACTGAGAGACAGGGACTGATCTGCCATAGATAAAATCTCCTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTGAGAGACAGGGACTGATCTGCCATAGATAAAATCTCCTTTTGT  350

seq1  TGCTATCAGAACTCTGAGGGAAAGTGGTTAGGAGGAAATGTTTTTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCAGAACTCTGAGGGAAAGTGGTTAGGAGGAAATGTTTTTGCTGG  400

seq1  TGTTGTGCTTAGACTGGTCCAGAGATCTTAAGTCTCAAACATAGTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCTTAGACTGGTCCAGAGATCTTAAGTCTCAAACATAGTTCTGA  450

seq1  GGTGTTTAGCTTCAGGACCTCACGGAAGTCCACCCTTTACTTTGTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTAGCTTCAGGACCTCACGGAAGTCCACCCTTTACTTTGTTTATT  500

seq1  GCATGTCTCCATCATCCCCCCACCTCAGTCCTAGCGATCAGTCAGTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTCCATCATCCCCCCACCTCAGTCCTAGCGATCAGTCAGTCAGA  550

seq1  AATGTAGGCAGCTCCAGTCATCTTTAACTCCCTGCCTTCAGATAGTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGCAGCTCCAGTCATCTTTAACTCCCTGCCTTCAGATAGTGTTA  600

seq1  TTTTTCTTTTGTCTTCCAACATGGCCTAGAGGGATTAAAGAGAGCTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTGTCTTCCAACATGGCCTAGAGGGATTAAAGAGAGCTAAAC  650

seq1  TTAACTTTGGCACCTGTTTTCCTTTTGCAGTGTGTTTGCAGTGAGTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTGGCACCTGTTTTCCTTTTGCAGTGTGTTTGCAGTGAGTTTGA  700

seq1  TACTGGCTGCTGGGATCTGGTTCTTGAGAAGGTTCACAGGTTTGCATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTGCTGGGATCTGGTTCTTGAGAAGGTTCACAGGTTTGCATTAG  750

seq1  TTCCTTGGACCTGTAGGTCTACTGTGTTTCCTCCATCCCTTCAGAGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGACCTGTAGGTCTACTGTGTTTCCTCCATCCCTTCAGAGTCTA  800

seq1  GGATACAGTAATGGTGGAACATAGGAGGTTGATGGCTCGATAAACCACCC  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGATACAGTAATGGTGGAACATAGGAGGTTGATGGCTCGAT-AACCACCC  849

seq1  CTTCTTTCCGTTTTTTCTGACCCTTGGAAAGGGGGATGTCATCTG-AATG  899
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  CTTCTTTCCGTTTTTTCTGACCTTTGGAAAGGGGGATGTCATCTGAAATG  899

seq1  GACTACCTTGGTGATTACTAGATTCCTAGTAGCCTTTCTTTGAGTCTGTT  949
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  GACTACCTTGGTGATTACTAAATTCCTAGTAGCC-TTCTTTGAGTCTGTT  948

seq1  TTGTTGTTACACCTCCTGTACATTGCCATTTCCTGAGTAT-GAGCTACCT  998
      |||||| ||||||||||||||| || |||||||||||||| |||||||| 
seq2  TTGTTG-TACACCTCCTGTACAATGGCATTTCCTGAGTATGGAGCTACC-  996

seq1  TTTCAGGCCTTAAGA  1013
       |||||||| |||||
seq2  CTTCAGGCC-TAAGA  1010