BAC Information

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BAC

Clone NameB6Ng01-208F24
Chromosome2 (Build37)
Map Location 65,723,946 - 65,901,577
singlet/doubletdoublet
Overlap geneA330102K23Rik
Upstream geneGrb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1
Downstream geneGalnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208F24.bB6Ng01-208F24.g
ACCGA027274GA027275
length1,123894
definitionB6Ng01-208F24.b B6Ng01-208F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,723,946 - 65,725,052)(65,900,688 - 65,901,577)
sequence
gaattcaatctagggagtggtagctttcccctctccagaacctggttaaa
actcgtgaaacaatgactatagcctttcgctcttgtcccttcattaacat
catgttcagagactcattaatgctattctgtgtgtcatgactatcaccta
tttttgctatcatagtcgactttataaacacaccacagtttctttacact
tttccccactaaggactatttggatcctttagttttgggagctccaattg
aagttgctataaacataagtttcaaaaggttatctttatgcagacttagt
atgatttgaaaaggaaatgttatccacaggctgtttgtgtcaatcatctg
atgtggcagccttgttttgaaaggctgtggaatctttaggaggtggggat
acgctagaggaagttatggtacactagctacaagcttttcagtaagtcaa
agttgcaaatatttttgagtgtatttcttgtctaaattttggtttgcact
taaatgtgggtctattttgagaggtttttttttctgtataattctaaaat
ttgaaatttaatgctttatgggaaaatattcaaatattctgtcatttgtg
aaaagaattatcctttcttcattaaatttctttttcatgtttgccaaaaa
ttagttaataatatacatctggatgagtttctagcttctttgtttttccc
ctatcctcattattaagctacctggttgcaaatttttttcaaataaatct
ccagacagcacaaaatctcttcatttaaagatagatagcttttgtattct
tttgtagttttgccttgccttatgcatttggagtcaccttgttgatgtct
ataaaactatcttgtaaaattttgattgacatactctactagaaaaacga
tcatttgagaaaggtcctcatttcacgtattaagataaaataacttaaat
attgttaaagtacagcccatttaatatcattacttaaatccttatgaaga
ttattgacatggtctttttacaaagctttttccaaaagtctaaatgatat
tgggcttttgaacccaactggtcaattaatggttcattaaattttaaatc
tcctcaggaagaagttacctatt
gaattctccaccgtggcttccacctcctcccggccatcctcttcccaaac
cacgaaacccaaatgaatgtgttttgttctaaatgggcacagccttaaat
atgaaaccaggaatttggggttgaggatcgtccacggttgatggcattta
tatttttctggcctttgttttcgaagcaaagacaaactaagatccttcat
ctatgctcgcctctttccagttaagctaaaagtagaccgcctcatgctgg
tccttctttctcagctgcttgctgcttatttttagagctgtttcttcaac
agtggaagtgggcctgccttttggcattgaaatatattttggagtggatg
tgagagggggaagcagttagccacgcctgtgggccagtgttcaccaaggt
caagttcaagtgctcacccacttctgtctgctttctcttttctcaaatct
cttcggtctttgtcatcttcccctgacaccccaggaccctctggttcgtc
tctagagaagagtccagatttggaatgccctgggattaactatctgatga
agtaacaggaaaactttgactgtggggtcatagaacaaaggtaatgactg
gaagaagaggtttaaagcaatcacttaaagtttagtcctaataaaggaat
ctggttgttgaaacaaatattagttaagtcatagggtacaattgtattct
ttttaaaaggattcagattcgttgaaatacagaggagaaaaaaaaataca
acactagcctatccggtgtactgaagaaaactcatttttgttggttttgt
gttattgattttttaccattaaaattcatttagattgaagtattcttcat
attagacttggggctttcttctttattttggatttcatcatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_65723946_65725052
seq2: B6Ng01-208F24.b_46_1168

seq1  GAATTCAATCTAGGGAGTGGTAGCTTTCCCCTCTCCAGAACCTGGTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTAGGGAGTGGTAGCTTTCCCCTCTCCAGAACCTGGTTAAA  50

seq1  ACTCGTGAAACAATGACTATAGCCTTTCGCTCTTGTCCCTTCATTAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTGAAACAATGACTATAGCCTTTCGCTCTTGTCCCTTCATTAACAT  100

seq1  CATGTTCAGAGACTCATTAATGCTATTCTGTGTGTCATGACTATCACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAGAGACTCATTAATGCTATTCTGTGTGTCATGACTATCACCTA  150

seq1  TTTTTGCTATCATAGTCGACTTTATAAACACACCACAGTTTCTTTACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTATCATAGTCGACTTTATAAACACACCACAGTTTCTTTACACT  200

seq1  TTTCCCCACTAAGGACTATTTGGATCCTTTAGTTTTGGGAGCTCCAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCACTAAGGACTATTTGGATCCTTTAGTTTTGGGAGCTCCAATTG  250

seq1  AAGTTGCTATAAACATAAGTTTCAAAAGGTTATCTTTATGCAGACTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTATAAACATAAGTTTCAAAAGGTTATCTTTATGCAGACTTAGT  300

seq1  ATGATTTGAAAAGGAAATGTTATCCACAGGCTGTTTGTGTCAATCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGAAAAGGAAATGTTATCCACAGGCTGTTTGTGTCAATCATCTG  350

seq1  ATGTGGCAGCCTTGTTTTGAAAGGCTGTGGAATCTTTAGGAGGTGGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAGCCTTGTTTTGAAAGGCTGTGGAATCTTTAGGAGGTGGGGAT  400

seq1  ACGCTAGAGGAAGTTATGGTACACTAGCTACAAGCTTTTCAGTAAGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTAGAGGAAGTTATGGTACACTAGCTACAAGCTTTTCAGTAAGTCAA  450

seq1  AGTTGCAAATATTTTTGAGTGTATTTCTTGTCTAAATTTTGGTTTGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAAATATTTTTGAGTGTATTTCTTGTCTAAATTTTGGTTTGCACT  500

seq1  TAAATGTGGGTCTATTTTGAGAGGTTTTTTTTTCTGTATAATTCTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGGGTCTATTTTGAGAGGTTTTTTTTTCTGTATAATTCTAAAAT  550

seq1  TTGAAATTTAATGCTTTATGGGAAAATATTCAAATATTCTGTCATTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTAATGCTTTATGGGAAAATATTCAAATATTCTGTCATTTGTG  600

seq1  AAAAGAATTATCCTTTCTTCATTAAATTTCTTTTTCATGTTTGCCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATTATCCTTTCTTCATTAAATTTCTTTTTCATGTTTGCCAAAAA  650

seq1  TTAGTTAATAATATACATCTGGATGAGTTTCTAGCTTCTTTGTTTTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAATAATATACATCTGGATGAGTTTCTAGCTTCTTTGTTTTTCCC  700

seq1  CTATCCTCATTATTAAGCTACCTGGTTGCAAA-TTTTTTCAAATAAATCT  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTATCCTCATTATTAAGCTACCTGGTTGCAAATTTTTTTCAAATAAATCT  750

seq1  CCAGACAGCACAAAATCTCTTCATTTAAAGATAGATAGCTTTTGTATTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGCACAAAATCTCTTCATTTAAAGATAGATAGCTTTTGTATTCT  800

seq1  TTTGTAGTTTTGCCTTGCCTTATGCATTTGGAGTCACCTTGTTGATGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTTTTGCCTTGCCTTATGCATTTGGAGTCACCTTGTTGATGTCT  850

seq1  ATTAAAACTATCTTGTAAAATTTTGATTGACATACTCTACTAG-AAAACG  898
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  A-TAAAACTATCTTGTAAAATTTTGATTGACATACTCTACTAGAAAAACG  899

seq1  ATCATTTGAGAAA-GTCCTCATTTCACGTA-TAAGATAAAATAACT--AA  944
      ||||||||||||| |||||||||||||||| |||||||||||||||  ||
seq2  ATCATTTGAGAAAGGTCCTCATTTCACGTATTAAGATAAAATAACTTAAA  949

seq1  TATTGTTAAAGTACAG-CCATTAAATATCA-TAC-TAAAT-CTTATGAAG  990
      |||||||||||||||| ||||| ||||||| ||| ||||| |||||||||
seq2  TATTGTTAAAGTACAGCCCATTTAATATCATTACTTAAATCCTTATGAAG  999

seq1  ATAATTGACAATGTCTTTTTAC-AAGC-TTTTCATAAAGTCT-AATGATA  1037
      || |||||||  |||||||||| |||| |||||  ||||||| |||||||
seq2  ATTATTGACATGGTCTTTTTACAAAGCTTTTTCCAAAAGTCTAAATGATA  1049

seq1  TTGG--CTTTGAACCCAAACTGTCAAATTAAATGGTCATT-AATTTTAAA  1084
      ||||   ||||||||| |||||   ||||||  | ||||| |||||||||
seq2  TTGGGCTTTTGAACCC-AACTGGTCAATTAATGGTTCATTAAATTTTAAA  1098

seq1  TCT-CTCAGGAAGAAGTTA-CTATT  1107
      ||| ||||||||||||||| |||||
seq2  TCTCCTCAGGAAGAAGTTACCTATT  1123

seq1: chr2_65900688_65901577
seq2: B6Ng01-208F24.g_67_960 (reverse)

seq1  GAAATGATG-AATGCAAAATAAAGAAGAAAG-CCCAATTCTTATATGATG  48
      ||||||||| ||| ||||||||||||||||| ||||| ||| |||||| |
seq2  GAAATGATGAAATCCAAAATAAAGAAGAAAGCCCCAAGTCTAATATGAAG  50

seq1  ACTACTTCAATCTAAATGAATTTTGAATGCT-AAAAATC-ATAACACAAA  96
      | |||||||||||||||||||||| |||| | ||||||| ||||||||||
seq2  AATACTTCAATCTAAATGAATTTT-AATGGTAAAAAATCAATAACACAAA  99

seq1  ACCAACAAAAATGAGTTTTCTTCAGTACACCGGATAGGCTAGTGTTGTAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAAAAATGAGTTTTCTTCAGTACACCGGATAGGCTAGTGTTGTAT  149

seq1  TTTTTTTTCTCCTCTGTATTTCAACGAATCTGAATCCTTTTAAAAAGAAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTCCTCTGTATTTCAACGAATCTGAATCCTTTTAAAAAGAAT  199

seq1  ACAATTGTACCCTATGACTTAACTAATATTTGTTTCAACAACCAGATTCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTACCCTATGACTTAACTAATATTTGTTTCAACAACCAGATTCC  249

seq1  TTTATTAGGACT-AACTTTAAGTGATTGCTTTAAACCTCTTCTTCCAGTC  295
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGGACTAAACTTTAAGTGATTGCTTTAAACCTCTTCTTCCAGTC  299

seq1  ATTACCTTTGTTCTATGACCCCACAGTCAAAGTTTTCCTGTTACTTCATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTTTGTTCTATGACCCCACAGTCAAAGTTTTCCTGTTACTTCATC  349

seq1  AGATAGTTAATCCCAGGGCATTCCAAATCTGGACTCTTCTCTAGAGACGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTAATCCCAGGGCATTCCAAATCTGGACTCTTCTCTAGAGACGA  399

seq1  ACCAGAGGGTCCTGGGGTGTCAGGGGAAGATGACAAAGACCGAAGAGATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGGTCCTGGGGTGTCAGGGGAAGATGACAAAGACCGAAGAGATT  449

seq1  TGAGAAAAGAGAAAGCAGACAGAAGTGGGTGAGCACTTGAACTTGACCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAGAGAAAGCAGACAGAAGTGGGTGAGCACTTGAACTTGACCTT  499

seq1  GGTGAACACTGGCCCACAGGCGTGGCTAACTGCTTCCCCCTCTCACATCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACACTGGCCCACAGGCGTGGCTAACTGCTTCCCCCTCTCACATCC  549

seq1  ACTCCAAAATATATTTCAATGCCAAAAGGCAGGCCCACTTCCACTGTTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAAATATATTTCAATGCCAAAAGGCAGGCCCACTTCCACTGTTGA  599

seq1  AGAAACAGCTCTAAAAATAAGCAGCAAGCAGCTGAGAAAGAAGGACCAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCTCTAAAAATAAGCAGCAAGCAGCTGAGAAAGAAGGACCAGC  649

seq1  ATGAGGCGGTCTACTTTTAGCTTAACTGGAAAGAGGCGAGCATAGATGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCGGTCTACTTTTAGCTTAACTGGAAAGAGGCGAGCATAGATGAA  699

seq1  GGATCTTAGTTTGTCTTTGCTTCGAAAACAAAGGCCAGAAAAATATAAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTAGTTTGTCTTTGCTTCGAAAACAAAGGCCAGAAAAATATAAAT  749

seq1  GCCATCAACCGTGGACGATCCTCAACCCCAAATTCCTGGTTTCATATTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAACCGTGGACGATCCTCAACCCCAAATTCCTGGTTTCATATTTA  799

seq1  AGGCTGTGCCCATTTAGAACAAAACACATTCATTTGGGTTTCGTGGTTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGCCCATTTAGAACAAAACACATTCATTTGGGTTTCGTGGTTTG  849

seq1  GGAAGAGGATGGCCGGGAGGAGGTGGAAGCCACGGTGGAGAATTC  890
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGATGGCCGGGAGGAGGTGGAAGCCACGGTGGAGAATTC  894