BAC Information

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BAC

Clone NameB6Ng01-209A16
Chromosome2 (Build37)19 (Build37)
Map Location 165,029,405 - 165,030,12351,682,083 - 51,682,421
singlet/doubletsingletsinglet
Overlap geneCdh22
Upstream geneWfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40
Downstream geneSlc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209A16.bB6Ng01-209A16.g
ACCGA027762GA027763
length720654
definitionB6Ng01-209A16.b B6Ng01-209A16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(165,029,405 - 165,030,123)(51,682,083 - 51,682,421)
sequence
gaattccagacactctaaggacagcagcccctctctctgtctccaagtct
ctatcaatactcttgctcttttctgtatttcattcagccctgatcacctt
gtgacctgtcctatattctcatatttactgtgatttttcaatgtgcgtgt
gtatgtgtgcacgcttgcgtgtgcccacgtgtgtgcctcgtgtatacaat
caggtatccaaggaacctagaagaggacctcagatcccttaaagctggat
tgtaggtgattgtgagccccctgatggggtgctgggaactgaactctggt
cctctgtaagagctgcaagctctcttaactgctgagcctcctctgcaacc
ccttgctgtgctttttgtgtgccttgctcctcctccatggcacattacag
tcactgggataagaatgcttgctggcttctttcactcacatgcccttagg
acacagaagagtctctgccacagagaagtggccaacatgtatttgttgag
tatctgaattcataagaggctccacaaatacctgagttctgttcgtgcca
gaagctgaccacatgggctctggatggacgaatgtcttatccctagagga
attgtcttttaggagattgaccatggcaacaaaagggggggggggttggg
accaccagatgccatcacttaaaaatcagggtggggggtttcaggctgag
tgaataacatgtgtaaggca
gaattcaacttctgtggagttttgtacagggggaatgtagactttaaata
tcctctttatggcctgggcttcctatggatggtgtaggttaggggtggag
agagacagcctgagtatcagcccttacttatcttaggccatatggtgctg
ctgtaacaaaatacccgaggctggtcagtttacattgaagacaaatttgt
ttctcacaatctgggaggctaagtccaagaccaaggggctagaatctggt
gaggatcttatctttcatctcctagcagtggacagtaaaaggaggggaag
gggaggggagatgagaggatgctaaatttaacctcagtgtatcaattata
tctaattacttcccttcatttaaacaaaaaagatatttgtatttaaataa
atataaaaatggtgtatacatcatagaaaatgagttctttgttgtatttt
gtttgataatgccaaaactatgaagtaatacttttacatctcagtttcta
tgtgcatgtgcatatattcatagacatgttgactcatatactccttgttt
gtgtcaatatcattcatatttatactttacttcagcctatgtctcactta
cttttcccttaaatgtgtttgccactgtacgagagactatgaatgatgtt
tgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165029405_165030123
seq2: B6Ng01-209A16.b_46_765

seq1  GAATTCCAGACACTCTAAGGACAGCAGCCCCTCTCTCTGTCTCCAAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACACTCTAAGGACAGCAGCCCCTCTCTCTGTCTCCAAGTCT  50

seq1  CTATCAATACTCTTGCTCTTTTCTGTATTTCATTCAGCCCTGATCACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATACTCTTGCTCTTTTCTGTATTTCATTCAGCCCTGATCACCTT  100

seq1  GTGACCTGTCCTATATTCTCATATTTACTGTGATTTTTCAATGTGCGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGTCCTATATTCTCATATTTACTGTGATTTTTCAATGTGCGTGT  150

seq1  GTATGTGTGCACGCTTGCGTGTGCCCACGTGTGTGCCTCGTGTATACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGCACGCTTGCGTGTGCCCACGTGTGTGCCTCGTGTATACAAT  200

seq1  CAGGTATCCAAGGAACCTAGAAGAGGACCTCAGATCCCTTAAAGCTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCCAAGGAACCTAGAAGAGGACCTCAGATCCCTTAAAGCTGGAT  250

seq1  TGTAGGTGATTGTGAGCCCCCTGATGGGGTGCTGGGAACTGAACTCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGATTGTGAGCCCCCTGATGGGGTGCTGGGAACTGAACTCTGGT  300

seq1  CCTCTGTAAGAGCTGCAAGCTCTCTTAACTGCTGAGCCTCCTCTGCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAAGAGCTGCAAGCTCTCTTAACTGCTGAGCCTCCTCTGCAACC  350

seq1  CCTTGCTGTGCTTTTTGTGTGCCTTGCTCCTCCTCCATGGCACATTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGTGCTTTTTGTGTGCCTTGCTCCTCCTCCATGGCACATTACAG  400

seq1  TCACTGGGATAAGAATGCTTGCTGGCTTCTTTCACTCACATGCCCTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGATAAGAATGCTTGCTGGCTTCTTTCACTCACATGCCCTTAGG  450

seq1  ACACAGAAGAGTCTCTGCCACAGAGAAGTGGCCAACATGTATTTGTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGAGTCTCTGCCACAGAGAAGTGGCCAACATGTATTTGTTGAG  500

seq1  TATCTGAATTCATAAGAGGCTCCACAAATACCTGAGTTCTGTTCGTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAATTCATAAGAGGCTCCACAAATACCTGAGTTCTGTTCGTGCCA  550

seq1  GAAGCTGACCACATGGGCTCTGGATGGACGAATGTCTTATCCCTAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGACCACATGGGCTCTGGATGGACGAATGTCTTATCCCTAGAGGA  600

seq1  ATTGTCTTTTAGGAGATTGACCATGGCAACAAAAGGGGGGGGGGGTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTTTAGGAGATTGACCATGGCAACAAAAGGGGGGGGGGGTTGGG  650

seq1  ACCACCAGATGCCATCACTTAAAAATCAGGGTGGGGGG-TTCAGGCTGAG  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCACCAGATGCCATCACTTAAAAATCAGGGTGGGGGGTTTCAGGCTGAG  700

seq1  TGAATAACATGTGCAAGGCA  719
      ||||||||||||| ||||||
seq2  TGAATAACATGTGTAAGGCA  720

seq1: chr19_51682083_51682421
seq2: B6Ng01-209A16.g_374_714 (reverse)

seq1  ACAAACATCATACAAAGTCTCTCCTACACTGGCAAACACATTTAAGGGAA  50
      ||||||||||| || |||||||| |||| |||||||||||||||||||||
seq2  ACAAACATCATTCATAGTCTCTCGTACAGTGGCAAACACATTTAAGGGAA  50

seq1  ATGTAAGTGAGACATAGGCTGAAGTAAAGTATATTTTTG-ATGATATTGG  99
      | |||||||||||||||||||||||||||||||  | || ||||||||| 
seq2  AAGTAAGTGAGACATAGGCTGAAGTAAAGTATAAATATGAATGATATTGA  100

seq1  CACAAACAAGGAGTATATGAGTCAACATGTCTATAAATATATGCACATGC  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACAAACAAGGAGTATATGAGTCAACATGTCTATGAATATATGCACATGC  150

seq1  ACATAGAAACTG-TATGTAAAAGTATTACTTCATAGTTTTAGCATTATCA  198
      ||||||||||||  |||||||||||||||||||||||||| |||||||||
seq2  ACATAGAAACTGAGATGTAAAAGTATTACTTCATAGTTTTGGCATTATCA  200

seq1  AACAAAATACAACAAAGAACTCAATTTTTATGATGTATACACCATTTTTA  248
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  AACAAAATACAACAAAGAACTCATTTTCTATGATGTATACACCATTTTTA  250

seq1  TATTTATTTAAATACAAATATCTTTCTTCTTTAAATGAAGGGAGGTAATT  298
      ||||||||||||||||||||||||| || |||||||||||||| ||||||
seq2  TATTTATTTAAATACAAATATCTTTTTTGTTTAAATGAAGGGAAGTAATT  300

seq1  AGATATAATTGATACACTGAGGTTAAATTTAGCATCCTCTC  339
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAATTGATACACTGAGGTTAAATTTAGCATCCTCTC  341