BAC Information

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BAC

Clone NameB6Ng01-209E04
Chromosome2 (Build37)
Map Location 152,984,876 - 152,986,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck
Downstream geneTm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209E04.bB6Ng01-209E04.g
ACCGA027923GA027924
length1,1401,174
definitionB6Ng01-209E04.b B6Ng01-209E04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagacccagactatgatctgagagacctgtagaggctcggata
gaactcagtggtagaatgcctacctagcaaagatgaggcgtgaggcttca
tccccattacagcaggcacaagcagacacccaaactggggcaaagacaaa
ctgagagaaaccatcttccagctcaaaaacaaacagcagaatttctggtg
ttccacctatggtcacttgctctttgacaagggagctaaaaccatctagt
ggaaaaaagacagcattttcaacaaatggtgctggcacaactggcagtta
tcatgtagaagaattcgaattggtccattcttatctccttgtacatagct
caagtctaagtggatcaaggaactctacataaaaccagagacactgaaac
ttatagaggagaaagtggggaaaagcctcgaagatatgggcacaggggaa
aaattcctgaacagaacagcaatggcttgtgctgtaagattgagaattga
caaatgggacctcataaaattgcaaagcttctataaggcaaaagacactg
tcaataagacaaaaaggccaccaacagattgggaaaggatctttacctat
cctaaatcagatagaggactaatttccaatatatataaataactcaagaa
gatggactccagaaaatcaaatagcctattaaaaaatggagtacagaact
aaacaaagaattctcaactgaggaataccgaatggctgagaaacacctaa
aaacattttcaacatccttaaacatcagggaaatgcaaatcaaaacaacc
ctgagattctacctcacaccagtcagattgactaagatcaaaaattcagg
tgacagcagatgctggcgaggatgtggagaaagcggaacgctcctccatt
gttggtgggattgcaagctggtacaaccactctggaaatctgtctggtgg
ttcctcagaaaattggacatagtactaccgaaagatccagcaataaccct
tcctgggcataatacccagaagatgtccaatttgtaataagaccacatgc
tccacttatgttcatagagcttatttataatagccaaagctgaagaccca
gatgttccctcaacagagattgcatacagaaaatgtggta
gaattccaagacagccagggttacacagcaaaaccctgtctcaaatatat
atatttccttatcaatataaatatcttcttttatattatgtgtaggggta
ttttgctgtatatatggctacgcatcattcacatacctggtccctacaga
ggccataagagggcatcaaaccccctggaaattggagttacagactgttg
tgcgcagccatgttgatgctgggactcaaactctgatattctagaagagg
atcttccaatggtcttaactgctgagtcatgtctccagccccatcagtat
tactctttaaccagacatagtggtaagaaacttccaggacttaagttgca
gtagaactggccacaagtctgcaattcagaattactacaagactatctag
taaatccatcctgcttctctagctctgtgcctcttgggaatatatctgct
ctttgggatggtgtgttggtcccaggcatttatgggtttgtttttcagca
ctcataacaatccaacccaatactaaatcaactaggctcaaccaagtagt
tcttttgttccaaatatcaataaggatattcacatgttctatatttagtt
agtagcttgctaggtttgaactgcacaaacttatttcctttatatgtgta
actgtcaggtggggtttctagaactctgtgaggaatgacatagacctgtc
tatgcagcaggacacccagccatatttatatccttgggaggaaggagaag
cttcaagcctcttacagcctagacacagaagtggaagacacttataattc
actctatttggtcaaagcaagtaacttaaccccagcattcaacaagagaa
aaaaattcaccttttgacaggagaaccagtatgctcattaacatgcaaga
aggagaggcttgttagtagacatttatgcagaaaaaaatccaccacggta
gtaatcagtactgaccacagtggtggtcagagctcagctgttccctggcc
atggtgcagaagagataactaaaaatctaagacagttttggcacagtact
tagcaatgctggagttttctgtttagccggtagcctcctcttataggcct
caggaatgggcttgaactcaccaatgccttcgttccctagcatcctggag
cgcaattacctaatgtggagccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152984876_152986044
seq2: B6Ng01-209E04.g_64_1237

seq1  GAATTCCAAGACAGCCAGGGTTACACAGCAAAACCCTGTCTCAAATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACAGCCAGGGTTACACAGCAAAACCCTGTCTCAAATATAT  50

seq1  ATATTTCCTTATCAATATAAATATCTTCTTTTATATTATGTGTAGGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTTATCAATATAAATATCTTCTTTTATATTATGTGTAGGGGTA  100

seq1  TTTTGCTGTATATATGGCTACGCATCATTCACATACCTGGTCCCTACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTATATATGGCTACGCATCATTCACATACCTGGTCCCTACAGA  150

seq1  GGCCATAAGAGGGCATCAAACCCCCTGGAAATTGGAGTTACAGACTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAGAGGGCATCAAACCCCCTGGAAATTGGAGTTACAGACTGTTG  200

seq1  TGCGCAGCCATGTTGATGCTGGGACTCAAACTCTGATATTCTAGAAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGCCATGTTGATGCTGGGACTCAAACTCTGATATTCTAGAAGAGG  250

seq1  ATCTTCCAATGGTCTTAACTGCTGAGTCATGTCTCCAGCCCCATCAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCAATGGTCTTAACTGCTGAGTCATGTCTCCAGCCCCATCAGTAT  300

seq1  TACTCTTTAACCAGACATAGTGGTAAGAAACTTCCAGGACTTAAGTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTAACCAGACATAGTGGTAAGAAACTTCCAGGACTTAAGTTGCA  350

seq1  GTAGAACTGGCCACAAGTCTGCAATTCAGAATTACTACAAGACTATCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTGGCCACAAGTCTGCAATTCAGAATTACTACAAGACTATCTAG  400

seq1  TAAATCCATCCTGCTTCTCTAGCTCTGTGCCTCTTGGGAATATATCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCATCCTGCTTCTCTAGCTCTGTGCCTCTTGGGAATATATCTGCT  450

seq1  CTTTGGGATGGTGTGTTGGTCCCAGGCATTTATGGGTTTGTTTTTCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGATGGTGTGTTGGTCCCAGGCATTTATGGGTTTGTTTTTCAGCA  500

seq1  CTCATAACAATCCAACCCAATACTAAATCAACTAGGCTCAACCAAGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAACAATCCAACCCAATACTAAATCAACTAGGCTCAACCAAGTAGT  550

seq1  TCTTTTGTTCCAAATATCAATAAGGATATTCACATGTTCTATATTTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTCCAAATATCAATAAGGATATTCACATGTTCTATATTTAGTT  600

seq1  AGTAGCTTGCTAGGTTTGAACTGCACAAACTTATTTCCTTTATATGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTGCTAGGTTTGAACTGCACAAACTTATTTCCTTTATATGTGTA  650

seq1  ACTGTCAGGTGGGGTTTCTAGAACTCTGTGAGGAATGACATAGACCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGGTGGGGTTTCTAGAACTCTGTGAGGAATGACATAGACCTGTC  700

seq1  TATGCAGCAGGACACCCAGCCATATTTATATCCTTGGGAGGAAGGAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCAGGACACCCAGCCATATTTATATCCTTGGGAGGAAGGAGAAG  750

seq1  CTTCAAGCCTCTTACAGCCTAGACACAGAAGTGGAAGACACTTATAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGCCTCTTACAGCCTAGACACAGAAGTGGAAGACACTTATAATTC  800

seq1  ACTCTATTTGGTCAAAGCAAGTAACTTAACCCCAGCATTCAACAAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTTGGTCAAAGCAAGTAACTTAACCCCAGCATTCAACAAGAGAA  850

seq1  AAAAATTCACCTTTTGACAGGAGAACCAGTATGCTCA-TAACATGCAAGA  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAAATTCACCTTTTGACAGGAGAACCAGTATGCTCATTAACATGCAAGA  900

seq1  AGGAGAGGCTTGTTAGTAGACATTTATGCAGAAAAAAATCCACCACGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGCTTGTTAGTAGACATTTATGCAGAAAAAAATCCACCACGGTA  950

seq1  GTAATCAGTACTGACCACAGTGGTGGTCAGAGCTCAGCTGTT-CCTTGCC  998
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  GTAATCAGTACTGACCACAGTGGTGGTCAGAGCTCAGCTGTTCCCTGGCC  1000

seq1  AAGGTGCAGAAGAGATAACTAAAAATCTTAAGACCAGTTTTGGCACAGTA  1048
      | ||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  ATGGTGCAGAAGAGATAACTAAAAATC-TAAGA-CAGTTTTGGCACAGTA  1048

seq1  CTTAAGCAATGCT-GAGTTTTCTGTTTAGCCCGTGGC--TCTCTT-TATG  1094
      ||| ||||||||| ||||||||||||||||| || ||   ||||| || |
seq2  CTT-AGCAATGCTGGAGTTTTCTGTTTAGCCGGTAGCCTCCTCTTATAGG  1097

seq1  GCTCAGG-ATGGTCTTGAACTCACC-ATGCCTTCCTTCCTCAGCATCCT-  1141
       |||||| |||| |||||||||||| |||||||| ||||  |||||||| 
seq2  CCTCAGGAATGGGCTTGAACTCACCAATGCCTTCGTTCCCTAGCATCCTG  1147

seq1  GAGCGCAAAAATTACC-AGTGT-GAGCCAC  1169
      ||||||   ||||||| | ||| |||||||
seq2  GAGCGC---AATTACCTAATGTGGAGCCAC  1174