BAC Information

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BAC

Clone NameB6Ng01-209I08
Chromosome2 (Build37)
Map Location 102,297,272 - 102,479,983
singlet/doubletdoublet
Overlap geneE430002G05Rik
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1
Downstream geneSlc1a2, Cd44, Pdhx, Apip, Ehf, Elf5, Cat, Abtb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209I08.bB6Ng01-209I08.g
ACCGA028116GA028117
length1,1351,037
definitionB6Ng01-209I08.b B6Ng01-209I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,297,272 - 102,298,427)(102,478,951 - 102,479,983)
sequence
gaattcactttgaattggcattgtttataagttggagttcctctaggcca
tgtgcccttgcaggagcgcatgggagctagagaggggacaggcatggaag
catcttaatcacagacagactgctggggtggctgtgcttttgttctttgg
ggacacagccaggctgtcttgtatgcaaaagctgtcccacctaaggaaaa
tcaccttccctctctgggcttgttaactcatccgtgaagagaagataaca
attcagtgtttcattactgtgtagatgagatgtgccttccacatttagta
attgctcaataaatttttattgcctgctatcacaatcttgggactttatt
tagaaagaacattggagcacagaacagggaacaactgatcttgccaggga
agtccaggaaggcttccccgaggaggcagatgctaagatgggccagtctt
gaaggacacgttaagacttatgcatcccagtttgaggggtaatgggcaac
agagaggacagcaggtgagcacagcagccaggctcccacgatttcatcac
cacacctttcaggtgagtgagtgaatttgtttaatcctcttgtgaagcct
ggcgtgaggctcctccctagcccctatctgatgagaacttccccatccct
tcaccaatgctcccagactgtcccaacccaccttgaagaatttacttgac
aaagaaacgtgactgtccccagctttgtggattttggtccttgtagctgc
ccagagctttacccagcatacatacaattagtgattctgcacccctccag
catccccaggtctcatcagtcacatagacgctgaagcttaattaagcttg
taaagctttctgatttcctccgatgaaaggtggcccatgagtaccaggtt
ttattttggtggctccctgccaagtgttattataaataggacttagtgcg
acgtggctgagctcttagggtgatattgtgtcagaccaatcgagctgcga
gagcagagatatatcatatggtcatcatctgcgtgggtgttatgagtgac
ttgaccgggtaagagtactgcagcagctagtctgtacggagcaactgcac
gtaaatatcgcagctctgggactccatcatatcat
gaattcattggagactgagtgtgaaaatggagccttgacaaggttgtgaa
gataacatagatgaagtcctctcaccgttttagctttatccccactgggg
atcaagggtcttttctttttctagatatgatgaatgatgaacaagaaaca
attcctctaagatcttatgagtcaatttcttctggataataagtttaagc
caaaaggagggagcttgaactgtggaattccaaaggtcactaaactaggg
ggatcgatcgatgggagaaaatccccttgctcaattaagctttctataaa
agccttccacaatattaacagcagttcacaagtgaccgtggaaaaggaaa
gaggctcaaactcaaagatgagccttgactcacttgggatacaggacggg
gcccgcccactccacttcccagttctcaggcatgtcctcctgctgcttcc
caggcggcggtagaagggcgagatgcactcatactggacttgggtgtgca
gatgttggtatccagggggcaggtctccaaatggaagggctggctttttg
gtagaggcatcctgcaatttctgcttgctgaaagccgtggaataaagctg
atgtaatggtgtctccctggatcaaggcacacaaggccagggaaagaaca
aaagcaagactttagcatccagttcccatgatgatgttggttataggaaa
gaaaaatacctcccatttccactttctctccctgtcctttcctcctgtct
ttgtccactcatgttctctttcttttttctctggtttcttttcctccttt
ttctccctctatccaccccctccttccctctcctcctcgctgtctctctc
cttttgctactgaataaattttctttatgtcactcaatattgtagtcctt
tgctcctggcattcttccaagtacctagaattttaaaccaaccgaataaa
gtcttgacatattattattgattcaatgtactctttgtgtagaccccacc
actaagggggaagaggagaggcagaggagagggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_102297272_102298427
seq2: B6Ng01-209I08.b_43_1177

seq1  GAATTCACTTTGAATTGGCATTGTTTATAAGTTGGAGTTCCTCTAGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGAATTGGCATTGTTTATAAGTTGGAGTTCCTCTAGGCCA  50

seq1  TGTGCCCTTGCAGGAGCGCATGGGAGCTAGAGAGGGGACAGGCATGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTTGCAGGAGCGCATGGGAGCTAGAGAGGGGACAGGCATGGAAG  100

seq1  CATCTTAATCACAGACAGACTGCTGGGGTGGCTGTGCTTTTGTTCTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAATCACAGACAGACTGCTGGGGTGGCTGTGCTTTTGTTCTTTGG  150

seq1  GGACACAGCCAGGCTGTCTTGTATGCAAAAGCTGTCCCACCTAAGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGCCAGGCTGTCTTGTATGCAAAAGCTGTCCCACCTAAGGAAAA  200

seq1  TCACCTTCCCTCTCTGGGCTTGTTAACTCATCCGTGAAGAGAAGATAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCCCTCTCTGGGCTTGTTAACTCATCCGTGAAGAGAAGATAACA  250

seq1  ATTCAGTGTTTCATTACTGTGTAGATGAGATGTGCCTTCCACATTTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGTTTCATTACTGTGTAGATGAGATGTGCCTTCCACATTTAGTA  300

seq1  ATTGCTCAATAAATTTTTATTGCCTGCTATCACAATCTTGGGACTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCAATAAATTTTTATTGCCTGCTATCACAATCTTGGGACTTTATT  350

seq1  TAGAAAGAACATTGGAGCACAGAACAGGGAACAACTGATCTTGCCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAACATTGGAGCACAGAACAGGGAACAACTGATCTTGCCAGGGA  400

seq1  AGTCCAGGAAGGCTTCCCCGAGGAGGCAGATGCTAAGATGGGCCAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGAAGGCTTCCCCGAGGAGGCAGATGCTAAGATGGGCCAGTCTT  450

seq1  GAAGGACACGTTAAGACTTATGCATCCCAGTTTGAGGGGTAATGGGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACACGTTAAGACTTATGCATCCCAGTTTGAGGGGTAATGGGCAAC  500

seq1  AGAGAGGACAGCAGGTGAGCACAGCAGCCAGGCTCCCACGATTTCATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGACAGCAGGTGAGCACAGCAGCCAGGCTCCCACGATTTCATCAC  550

seq1  CACACCTTTCAGGTGAGTGAGTGAATTTGTTTAATCCTCTTGTGAAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTTCAGGTGAGTGAGTGAATTTGTTTAATCCTCTTGTGAAGCCT  600

seq1  GGCGTGAGGCTCCTCCCTAGCCCCTATCTGATGAGAACTTCCCCATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGAGGCTCCTCCCTAGCCCCTATCTGATGAGAACTTCCCCATCCCT  650

seq1  TCACCAATGCTCCCAGACTGTCCCAACCCACCTTGAAGAATTTACTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAATGCTCCCAGACTGTCCCAACCCACCTTGAAGAATTTACTTGAC  700

seq1  AAAGAAACGTGACTGTCCCCAGCTTTGTGGATTTTGGTCCTTGTAGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACGTGACTGTCCCCAGCTTTGTGGATTTTGGTCCTTGTAGCTGC  750

seq1  CCAGAGCTTTACCCAGCATACATACAATTAGTGATTCTGCACCCCTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTTTACCCAGCATACATACAATTAGTGATTCTGCACCCCTCCAG  800

seq1  CATCCCCAGGTCTCATCAGTCACATAGACGCTGAAGCTTAATTAAGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAGGTCTCATCAGTCACATAGACGCTGAAGCTTAATTAAGCTTG  850

seq1  TAAAGCTTTCTGATTTCCTCCGATGAAAGGTGGCCCATGAGTACCAGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTCTGATTTCCTCCGATGAAAGGTGGCCCATGAGTACCAGGTT  900

seq1  TTATTTTGGTGGCT-CCTGCCAAGTGTTATTATAAATAGGACTTAGTGCG  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGTGGCTCCCTGCCAAGTGTTATTATAAATAGGACTTAGTGCG  950

seq1  ACGTGGCTGAGCTCTTAGGGTGATAATGTGTCAAGACCAATCGAGGCTGC  999
      ||||||||||||||||||||||||| |||||| ||||||||||| |||||
seq2  ACGTGGCTGAGCTCTTAGGGTGATATTGTGTC-AGACCAATCGA-GCTGC  998

seq1  GGAGAGCAGAGATATTATCATAATGGTTCCATCATCTGCGGTGGGTGTTA  1049
       ||||||||||||| |||||| |||||  |||||||||| ||||||||| 
seq2  -GAGAGCAGAGATA-TATCAT-ATGGT--CATCATCTGC-GTGGGTGTT-  1041

seq1  ATGGAAGTGGACGTGAACGGGGGAAAGAAGTACTGCAGGCAGCAGGGCCG  1099
      |||  ||| ||| ||| |  ||| ||| ||||||||| |||||   | | 
seq2  ATG--AGT-GACTTGACC--GGGTAAG-AGTACTGCA-GCAGC-TAGTCT  1083

seq1  GGACGGAGGCAACTGCAAGTGAAATATCGCAGCTCCTGGGATCTCCATCA  1149
      | ||||| ||||||||| || ||||||||||||| |||||| ||||||||
seq2  GTACGGA-GCAACTGCACGT-AAATATCGCAGCT-CTGGGA-CTCCATCA  1129

seq1  TAATCAT  1156
      | |||||
seq2  T-ATCAT  1135

seq1: chr2_102478951_102479983
seq2: B6Ng01-209I08.g_66_1102 (reverse)

seq1  CTCT-CCTCTCCTCT-CCTCTCCTCTTCCCCCTTAGTG--TGTGTCTACA  46
      |||| |||||||||| ||||||||||||||||||||||   | |||||||
seq2  CTCTCCCTCTCCTCTGCCTCTCCTCTTCCCCCTTAGTGGTGGGGTCTACA  50

seq1  CAAAGAGTACATTTGAATC-ATAATATTATGTC-AGACTTTATTCGGTTT  94
      ||||||||||| ||||||| |||||| |||||| ||||||||||||| ||
seq2  CAAAGAGTACA-TTGAATCAATAATAATATGTCAAGACTTTATTCGG-TT  98

seq1  GGTTTAAAATTCTAGGTACTTGGAAGAATGCCAGGAGCAAAGGACTACAA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAATTCTAGGTACTTGGAAGAATGCCAGGAGCAAAGGACTACAA  148

seq1  TATTGAGTGACATAAAGAAAATTTATTCAGTAGCAAAAGGAGAGAGACAG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTGACATAAAGAAAATTTATTCAGTAGCAAAAGGAGAGAGACAG  198

seq1  CGAGGAGGAGAGGGAAGGAGGGGGTGGATAGAGGGAGAAAAAGGAGGAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAGGAGAGGGAAGGAGGGGGTGGATAGAGGGAGAAAAAGGAGGAAA  248

seq1  AGAAACCAGAGAAAAAAGAAAGAGAACATGAGTGGACAAAGACAGGAGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAGAGAAAAAAGAAAGAGAACATGAGTGGACAAAGACAGGAGGA  298

seq1  AAGGACAGGGAGAGAAAGTGGAAATGGGAGGTATTTTTCTTTCCTATAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGGGAGAGAAAGTGGAAATGGGAGGTATTTTTCTTTCCTATAAC  348

seq1  CAACATCATCATGGGAACTGGATGCTAAAGTCTTGCTTTTGTTCTTTCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCATCATGGGAACTGGATGCTAAAGTCTTGCTTTTGTTCTTTCCC  398

seq1  TGGCCTTGTGTGCCTTGATCCAGGGAGACACCATTACATCAGCTTTATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTGTGCCTTGATCCAGGGAGACACCATTACATCAGCTTTATTC  448

seq1  CACGGCTTTCAGCAAGCAGAAATTGCAGGATGCCTCTACCAAAAAGCCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTTTCAGCAAGCAGAAATTGCAGGATGCCTCTACCAAAAAGCCAG  498

seq1  CCCTTCCATTTGGAGACCTGCCCCCTGGATACCAACATCTGCACACCCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCATTTGGAGACCTGCCCCCTGGATACCAACATCTGCACACCCAA  548

seq1  GTCCAGTATGAGTGCATCTCGCCCTTCTACCGCCGCCTGGGAAGCAGCAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTATGAGTGCATCTCGCCCTTCTACCGCCGCCTGGGAAGCAGCAG  598

seq1  GAGGACATGCCTGAGAACTGGGAAGTGGAGTGGGCGGGCCCCGTCCTGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATGCCTGAGAACTGGGAAGTGGAGTGGGCGGGCCCCGTCCTGTA  648

seq1  TCCCAAGTGAGTCAAGGCTCATCTTTGAGTTTGAGCCTCTTTCCTTTTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGAGTCAAGGCTCATCTTTGAGTTTGAGCCTCTTTCCTTTTCC  698

seq1  ACGGTCACTTGTGAACTGCTGTTAATATTGTGGAAGGCTTTTATAGAAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCACTTGTGAACTGCTGTTAATATTGTGGAAGGCTTTTATAGAAAG  748

seq1  CTTAATTGAGCAAGGGGATTTTCTCCCATCGATCGATCCCCCTAGTTTAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGAGCAAGGGGATTTTCTCCCATCGATCGATCCCCCTAGTTTAG  798

seq1  TGACCTTTGGAATTCCACAGTTCAAGCTCCCTCCTTTTGGCTTAAACTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTGGAATTCCACAGTTCAAGCTCCCTCCTTTTGGCTTAAACTTA  848

seq1  TTATCCAGAAGAAATTGACTCATAAGATCTTAGAGGAATTGTTTCTTGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGAAGAAATTGACTCATAAGATCTTAGAGGAATTGTTTCTTGTT  898

seq1  CATCATTCATCATATCTAGAAAAAGAAAAGACCCTTGATCCCCAGTGGGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCATCATATCTAGAAAAAGAAAAGACCCTTGATCCCCAGTGGGG  948

seq1  ATAAAGCTAAAACGGTGAGAGGACTTCATCTATGTTATCTTCACAACCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTAAAACGGTGAGAGGACTTCATCTATGTTATCTTCACAACCTT  998

seq1  GTCAAGGCTCCATTTTCACACTCAGTCTCCAATGAATTC  1033
      |||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGCTCCATTTTCACACTCAGTCTCCAATGAATTC  1037