BAC Information

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BAC

Clone NameB6Ng01-209L17
Chromosome2 (Build37)
Map Location 168,168,389 - 168,322,666
singlet/doubletdoublet
Overlap geneLOC668952, Nfatc2
Upstream geneB4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1
Downstream geneAtp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209L17.bB6Ng01-209L17.g
ACCGA028274GA028275
length2641,118
definitionB6Ng01-209L17.b B6Ng01-209L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,322,403 - 168,322,666)(168,168,389 - 168,169,518)
sequence
agttttattggtacctaaaaatgagttgatcccaaactgactaactagct
ccctccgtctcttcctgacacatggattgggttggagtcagctcttgctt
gtggaaaaggatagcccgttggcgttccctgggtgtagttagcttgaaga
ttttgcttggctcacctacacagtttggtttttttttgtttttgtttttg
ttttgtttttttaattagattagatgcagcactaaagaagcagggagttg
tacgtgggtggggg
gaattccaattaaattcaccgtttaaagtcatgagtgaaatctgcctcgg
gctttatctcctctgcacatcactgggagctggaaattcagctcttgcat
ctaagccaggctgagaaatgtcacagagggcctgggcgtcatctctcagt
gaggggtctggcattctccagccagagacctcaatttctctgaaacacga
tagtggagccttgtacaggggatgtagggctgcagggatttgtagagtac
tcaaggtgggagtcactgatagtgtccatccaacgtccctatctgtcccg
ccacctgctccagagcagggtgcattagcatcttgcctgggaggtttggg
cagaaagatggagactttattgaaactatccctgcccaatgctcattgtt
gtttctaaatttgatgaacttttatcttttgtttttttaaatcagtagga
gtgtatatgacacatttgagatgcctttggagtctagacgagagtattgg
tgttcaatcccccggaagcaggattacaggtggagtgagcttcccaaagt
tagtgctgggaattgaactctggctctccggaagctcagcaggtacgctt
aatcgttcagccatctcttcagcccaaatgctcgtttgaagactcatatt
gattcttttatttttatcttctggagacagagtttcacgtagcccaggct
gatctcaaactcactatagctgagggtgaccttgaaacaaaggtcggctg
ttgctgagggaggtggcccggagaggcgggtacccaggaaggaggcttct
ggcctcctatgtcatctgcctccccagactccagagctgtgggtggggag
acaggcaattattctctcggaacccaacacagttatttaacacagcactg
aagcttttaattaccagcatattagcatactacatgaggagcaacacttg
tgaaataacagcctagcgcctgtgcagcagcaaggccctgttcttaccac
taattagagaaagccaagcttgagagggattggtctttccgggagatatt
gataccgattagtcctcttcgcccatcactgcaggcagatggtgtctgtc
ccaggatctgtttgccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_168322403_168322666
seq2: B6Ng01-209L17.b_50_313 (reverse)

seq1  CCCCCACCCACGTACAACTCCCTGCTTCTTTAGTGCTGCATCTAATCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCACGTACAACTCCCTGCTTCTTTAGTGCTGCATCTAATCTAA  50

seq1  TTAAAAAAACAAAACAAAAACAAAAACAAAAAAAAACCAAACTGTGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAACAAAACAAAAACAAAAACAAAAAAAAACCAAACTGTGTAGG  100

seq1  TGAGCCAAGCAAAATCTTCAAGCTAACTACACCCAGGGAACGCCAACGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAGCAAAATCTTCAAGCTAACTACACCCAGGGAACGCCAACGGG  150

seq1  CTATCCTTTTCCACAAGCAAGAGCTGACTCCAACCCAATCCATGTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTTTCCACAAGCAAGAGCTGACTCCAACCCAATCCATGTGTCAG  200

seq1  GAAGAGACGGAGGGAGCTAGTTAGTCAGTTTGGGATCAACTCATTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACGGAGGGAGCTAGTTAGTCAGTTTGGGATCAACTCATTTTTAG  250

seq1  GTACCAATAAAACT  264
      ||||||||||||||
seq2  GTACCAATAAAACT  264

seq1: chr2_168168389_168169518
seq2: B6Ng01-209L17.g_66_1183

seq1  GAATTCCAATTAAATTCACCGTTTAAAGTCATGAGTGAAATCTGCCTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTAAATTCACCGTTTAAAGTCATGAGTGAAATCTGCCTCGG  50

seq1  GCTTTATCTCCTCTGCACATCACTGGGAGCTGGAAATTCAGCTCTTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCTCCTCTGCACATCACTGGGAGCTGGAAATTCAGCTCTTGCAT  100

seq1  CTAAGCCAGGCTGAGAAATGTCACAGAGGGCCTGGGCGTCATCTCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCAGGCTGAGAAATGTCACAGAGGGCCTGGGCGTCATCTCTCAGT  150

seq1  GAGGGGTCTGGCATTCTCCAGCCAGAGACCTCAATTTCTCTGAAACACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCTGGCATTCTCCAGCCAGAGACCTCAATTTCTCTGAAACACGA  200

seq1  TAGTGGAGCCTTGTACAGGGGATGTAGGGCTGCAGGGATTTGTAGAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGCCTTGTACAGGGGATGTAGGGCTGCAGGGATTTGTAGAGTAC  250

seq1  TCAAGGTGGGAGTCACTGATAGTGTCCATCCAACGTCCCTATCTGTCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGGGAGTCACTGATAGTGTCCATCCAACGTCCCTATCTGTCCCG  300

seq1  CCACCTGCTCCAGAGCAGGGTGCATTAGCATCTTGCCTGGGAGGTTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCTCCAGAGCAGGGTGCATTAGCATCTTGCCTGGGAGGTTTGGG  350

seq1  CAGAAAGATGGAGACTTTATTGAAACTATCCCTGCCCAATGCTCATTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATGGAGACTTTATTGAAACTATCCCTGCCCAATGCTCATTGTT  400

seq1  GTTTCTAAATTTGATGAACTTTTATCTTTTGTTTTTTTAAATCAGTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAAATTTGATGAACTTTTATCTTTTGTTTTTTTAAATCAGTAGGA  450

seq1  GTGTATATGACACATTTGAGATGCCTTTGGAGTCTAGACGAGAGTATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATGACACATTTGAGATGCCTTTGGAGTCTAGACGAGAGTATTGG  500

seq1  TGTTCAATCCCCCGGAAGCAGGATTACAGGTGGAGTGAGCTTCCCAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATCCCCCGGAAGCAGGATTACAGGTGGAGTGAGCTTCCCAAAGT  550

seq1  TAGTGCTGGGAATTGAACTCTGGCTCTCCGGAAGCTCAGCAGGTACGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGGGAATTGAACTCTGGCTCTCCGGAAGCTCAGCAGGTACGCTT  600

seq1  AATCGTTCAGCCATCTCTTCAGCCCAAATGCTCGTTTGAAGACTCATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTTCAGCCATCTCTTCAGCCCAAATGCTCGTTTGAAGACTCATATT  650

seq1  GATTCTTTTATTTTTATCTTCTGGAGACAGAGTTTCACGTAGCCCAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTTATTTTTATCTTCTGGAGACAGAGTTTCACGTAGCCCAGGCT  700

seq1  GATCTCAAACTCACTATAGCTGAGGGTGACCTTGAAACAAAGGTCGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAAACTCACTATAGCTGAGGGTGACCTTGAAACAAAGGTCGGCTG  750

seq1  TTGCTGAGGGAGGTGGCCCGGAGAGGCGGGTACCCAGGAAGGAGGCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGGGAGGTGGCCCGGAGAGGCGGGTACCCAGGAAGGAGGCTTCT  800

seq1  GGCCTCCTATGTCATCTGCCTCCCCAGACTCCAGAGCTGTGGGTGGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTATGTCATCTGCCTCCCCAGACTCCAGAGCTGTGGGTGGGGAG  850

seq1  ACAGGCAATTATTCTCTCGGAACCCAACACAGTTA-TTAACACAGCACTG  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACAGGCAATTATTCTCTCGGAACCCAACACAGTTATTTAACACAGCACTG  900

seq1  AGGCTTTTAATTACCAGCATATTAGCATACTACAATGAGGAGCAACACTT  949
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGCTTTTAATTACCAGCATATTAGCATACTAC-ATGAGGAGCAACACTT  949

seq1  GGTGAATAACAGCCTAGCGCCTGTGGCAGGCAGCAAGG-CCTGTTCTTAC  998
      |   |||||||||||||||||||| ||| ||||||||| |||||||||||
seq2  GTGAAATAACAGCCTAGCGCCTGT-GCA-GCAGCAAGGCCCTGTTCTTAC  997

seq1  CACTAATTAGGAGAAAGCCAAGCTGGAGGAGGGAATTGGTCTTTCCGGGG  1048
      ||||||||| |||||||||||||| || ||||| ||||||||||||||| 
seq2  CACTAATTA-GAGAAAGCCAAGCTTGA-GAGGG-ATTGGTCTTTCCGGG-  1043

seq1  AAGATAATTGGATAACGATTAGTTCTTCCTCCGCCCATCACTTGCAGGCA  1098
       |||||  | |||| |||||||| ||  || |||||||||| ||||||||
seq2  -AGATA--TTGATACCGATTAGTCCT--CTTCGCCCATCAC-TGCAGGCA  1087

seq1  GATGGTGTCGTGCCCCGTGATCTGTTTGCCAG  1130
      ||||||||| || |||  ||||||||||||||
seq2  GATGGTGTC-TGTCCCAGGATCTGTTTGCCAG  1118