BAC Information

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BAC

Clone NameB6Ng01-210D01
Chromosome2 (Build37)
Map Location 112,231,182 - 112,435,625
singlet/doubletdoublet
Overlap gene2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Upstream geneLOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839
Downstream geneRyr3, 4930563P21Rik, Fmn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210D01.bB6Ng01-210D01.g
ACCGA028595GA028596
length1,0621,101
definitionB6Ng01-210D01.b B6Ng01-210D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,434,564 - 112,435,625)(112,231,182 - 112,232,287)
sequence
gaattctgggaatggtagttcttggaaaataacaaagcctcatgggacag
tatagtgatttataggtttgtcctcataagctcctgaaacaggtggctca
aggcctttctcaggaaattccagggaatggtcttgaccaaagttcatctt
ggtcactatttaatagttaataaaaattgctttaaatttggcccaaaata
atggaattttttttctggtgaatcgcaggattaacatatggaagccccag
aagatcactccaccccaaattcactcttcactcatgcatacttgagaagc
aaactgccaaggtgaacaaccacattttgtggggggttgggggagacgca
gggaactgcacacatttgttttagctactattccattggtttctgagttc
tggttatagggtactctatctggaatgaagagggctggacacaaatctaa
aagatccttcatctggggcattgggaggcactcgaagcccacaggttatt
tctacagaatccaaagcctagcaaccatctagggtttccatgaatttgag
agccaatactgaggttttggataagtccagcatggatttgaggacccagg
gaagactcaggatggccttgcctttgatgagttcctagcatctgggttgt
acatgaagaactaatggacttctgaagcaaagaagtccaattattaaatg
tcattgtcttgccttgttttgtcttatcttatgaacctgatgatctatct
ttgtgtgttctgacttggagcagtaaggcactgccaaacacaccatctcc
aggtaccacctagccccacctcctacctgcatctagaaaggcagagaagc
ttagccacagaatttagtgatagccttgacggctttagcggcatagctgc
aatttcaatgtacagatgaatctgtaacttctatgtctgttagtttggct
gtctatttcgatgtatgaatgcccatagcccactgcatgtttgattctac
tgggcttgattgtgtgaaatacatgctgtttccttccactggcctgggct
cgatttacctct
gaattcagtcctcaggacccatatgccagctgtagctatataacaagttc
caggtcggcctgggttatataatgagactctgtttcaaaaaaaaaaaaaa
ttcccctaagatcccatttctctttgtttcagttttctcctatattaaaa
caaaggtaccgttttgtaggtttttcattcttttggagttaagtcaaggc
aaattatataaataaacatttttacttttattcatgaaaacactaaaaca
gctggttcccaagttacatggatagttaaaggtggaagctggaaaattct
gcctggttcttttgaacctggtctttaaactgcaccggtcttttaagttt
taagagagtctttagtttttactcagtaagctgtggcccatactactaca
cagtgagcagtaaggttcccagagagttgagagagcgtggaaggagccca
gaggtgtctgctgattgagctttgtaaactcccacatgccattgcataca
cagggcactgagggcatgttcagcttggtctacacagtctgatccagccc
acacagttgactactagaaccagttggtctggctttggtaatctccattc
agaacgcatgtgtgttctgggtgttttaaggaacatttcagaaactgtca
ggactcaagaatagactggtttcctaaagggaagacagtgggtctgagcc
caccgttacttctatcaagcaagtgcctgatgtatgagcatgctatagtg
aaaagccataaattctctcctctattttttcctatgtgctggggattgag
ccaaattcttgcagattttctaccactaagctacacaacagtgctatttc
ccaatttccttaaaggcagttattaagatactatttctatgacttgtcac
ttccatatagtagcacattcattactatagtaaagtatgtaacatctctc
tacccccaaaattttcttattccttgggagagactttttccctgcttatt
actgatatgttcctccaccagctattatttttgctattagatgtcatgaa
aatagcctttacattttagtttcttcacttagctcaatatagttgaagtt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112434564_112435625
seq2: B6Ng01-210D01.b_44_1105 (reverse)

seq1  AGAGGTAAATTCTGAGCCCAGGCAGGTGGAAGGAAACAGCATGTA-TTCA  49
      ||||||||||   ||||||||||  |||||||||||||||||||| ||||
seq2  AGAGGTAAAT--CGAGCCCAGGCCAGTGGAAGGAAACAGCATGTATTTCA  48

seq1  CACATTCAAGGCCAGTTAGAATCAAACATGCAGT-GGCTATGGACATTCA  98
      |||| ||||| |||| |||||||||||||||||| |||||||| ||||||
seq2  CACAATCAAGCCCAG-TAGAATCAAACATGCAGTGGGCTATGGGCATTCA  97

seq1  TACATACAAAATAGACAGCAAAACTTAACAGACATAGAAGTTACAGATTC  148
      ||||| | ||||||||||| |||| |||||||||||||||||||||||||
seq2  TACAT-CGAAATAGACAGCCAAAC-TAACAGACATAGAAGTTACAGATTC  145

seq1  ATCTGTACATTGGAATTGCAGCTATGCCGCT-AAGCCGTCAAGGCTATCA  197
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  ATCTGTACATTGAAATTGCAGCTATGCCGCTAAAGCCGTCAAGGCTATCA  195

seq1  CT-AATTCTGTGGCTAAGCTTCTCTGCC-TTCTAGATGCAGGTAGGAGGT  245
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAAATTCTGTGGCTAAGCTTCTCTGCCTTTCTAGATGCAGGTAGGAGGT  245

seq1  GGGGCTAGGTGGTACCTGGAGATGGTGTGTTTGGCAGTGCCTTACTGCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAGGTGGTACCTGGAGATGGTGTGTTTGGCAGTGCCTTACTGCTC  295

seq1  CAAGTCAGAACACACAAAGATAGATCATCAGGTTCATAAGATAAGACAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGAACACACAAAGATAGATCATCAGGTTCATAAGATAAGACAAA  345

seq1  ACAAGGCAAGACAATGACATTTAATAATTGGACTTCTTTGCTTCAGAAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAAGACAATGACATTTAATAATTGGACTTCTTTGCTTCAGAAGT  395

seq1  CCATTAGTTCTTCATGTACAACCCAGATGCTAGGAACTCATCAAAGGCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGTTCTTCATGTACAACCCAGATGCTAGGAACTCATCAAAGGCAA  445

seq1  GGCCATCCTGAGTCTTCCCTGGGTCCTCAAATCCATGCTGGACTTATCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCCTGAGTCTTCCCTGGGTCCTCAAATCCATGCTGGACTTATCCA  495

seq1  AAACCTCAGTATTGGCTCTCAAATTCATGGAAACCCTAGATGGTTGCTAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAGTATTGGCTCTCAAATTCATGGAAACCCTAGATGGTTGCTAG  545

seq1  GCTTTGGATTCTGTAGAAATAACCTGTGGGCTTCGAGTGCCTCCCAATGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGATTCTGTAGAAATAACCTGTGGGCTTCGAGTGCCTCCCAATGC  595

seq1  CCCAGATGAAGGATCTTTTAGATTTGTGTCCAGCCCTCTTCATTCCAGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGAAGGATCTTTTAGATTTGTGTCCAGCCCTCTTCATTCCAGAT  645

seq1  AGAGTACCCTATAACCAGAACTCAGAAACCAATGGAATAGTAGCTAAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACCCTATAACCAGAACTCAGAAACCAATGGAATAGTAGCTAAAAC  695

seq1  AAATGTGTGCAGTTCCCTGCGTCTCCCCCAACCCCCCACAAAATGTGGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTGCAGTTCCCTGCGTCTCCCCCAACCCCCCACAAAATGTGGTT  745

seq1  GTTCACCTTGGCAGTTTGCTTCTCAAGTATGCATGAGTGAAGAGTGAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCTTGGCAGTTTGCTTCTCAAGTATGCATGAGTGAAGAGTGAATT  795

seq1  TGGGGTGGAGTGATCTTCTGGGGCTTCCATATGTTAATCCTGCGATTCAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGAGTGATCTTCTGGGGCTTCCATATGTTAATCCTGCGATTCAC  845

seq1  CAGAAAAAAAATTCCATTATTTTGGGCCAAATTTAAAGCAATTTTTATTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAATTCCATTATTTTGGGCCAAATTTAAAGCAATTTTTATTA  895

seq1  ACTATTAAATAGTGACCAAGATGAACTTTGGTCAAGACCATTCCCTGGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAATAGTGACCAAGATGAACTTTGGTCAAGACCATTCCCTGGAA  945

seq1  TTTCCTGAGAAAGGCCTTGAGCCACCTGTTTCAGGAGCTTATGAGGACAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAGAAAGGCCTTGAGCCACCTGTTTCAGGAGCTTATGAGGACAA  995

seq1  ACCTATAAATCACTATACTGTCCCATGAGGCTTTGTTATTTTCCAAGAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAAATCACTATACTGTCCCATGAGGCTTTGTTATTTTCCAAGAAC  1045

seq1  TACCATTCCCAGAATTC  1062
      |||||||||||||||||
seq2  TACCATTCCCAGAATTC  1062

seq1: chr2_112231182_112232287
seq2: B6Ng01-210D01.g_66_1166

seq1  GAATTCAGTCCTCAGGACCCATATGCCAGCTGTAGCTATATAACAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTCAGGACCCATATGCCAGCTGTAGCTATATAACAAGTTC  50

seq1  CAGGTCGGCCTGGGTTATATAATGAGACTCTGTTTCAAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCGGCCTGGGTTATATAATGAGACTCTGTTTCAAAAAAAAAAAAAA  100

seq1  TTCCCCTAAGATCCCATTTCTCTTTGTTTCAGTTTTCTCCTATATTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTAAGATCCCATTTCTCTTTGTTTCAGTTTTCTCCTATATTAAAA  150

seq1  CAAAGGTACCGTTTTGTAGGTTTTTCATTCTTTTGGAGTTAAGTCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTACCGTTTTGTAGGTTTTTCATTCTTTTGGAGTTAAGTCAAGGC  200

seq1  AAATTATATAAATAAACATTTTTACTTTTATTCATGAAAACACTAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATAAATAAACATTTTTACTTTTATTCATGAAAACACTAAAACA  250

seq1  GCTGGTTCCCAAGTTACATGGATAGTTAAAGGTGGAAGCTGGAAAATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTCCCAAGTTACATGGATAGTTAAAGGTGGAAGCTGGAAAATTCT  300

seq1  GCCTGGTTCTTTTGAACCTGGTCTTTAAACTGCACCGGTCTTTTAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTTCTTTTGAACCTGGTCTTTAAACTGCACCGGTCTTTTAAGTTT  350

seq1  TAAGAGAGTCTTTAGTTTTTACTCAGTAAGCTGTGGCCCATACTACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGTCTTTAGTTTTTACTCAGTAAGCTGTGGCCCATACTACTACA  400

seq1  CAGTGAGCAGTAAGGTTCCCAGAGAGTTGAGAGAGCGTGGAAGGAGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCAGTAAGGTTCCCAGAGAGTTGAGAGAGCGTGGAAGGAGCCCA  450

seq1  GAGGTGTCTGCTGATTGAGCTTTGTAAACTCCCACATGCCATTGCATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCTGCTGATTGAGCTTTGTAAACTCCCACATGCCATTGCATACA  500

seq1  CAGGGCACTGAGGGCATGTTCAGCTTGGTCTACACAGTCTGATCCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACTGAGGGCATGTTCAGCTTGGTCTACACAGTCTGATCCAGCCC  550

seq1  ACACAGTTGACTACTAGAACCAGTTGGTCTGGCTTTGGTAATCTCCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTGACTACTAGAACCAGTTGGTCTGGCTTTGGTAATCTCCATTC  600

seq1  AGAACGCATGTGTGTTCTGGGTGTTTTAAGGAACATTTCAGAAACTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCATGTGTGTTCTGGGTGTTTTAAGGAACATTTCAGAAACTGTCA  650

seq1  GGACTCAAGAATAGACTGGTTTCCTAAAGGGAAGACAGTGGGTCTGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAGAATAGACTGGTTTCCTAAAGGGAAGACAGTGGGTCTGAGCC  700

seq1  CACCGTTACTTCTATCAAGCAAGTGCCTGATGTATGAGCATGCTATAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTTACTTCTATCAAGCAAGTGCCTGATGTATGAGCATGCTATAGTG  750

seq1  AAAAGCCATAAATTCTCTCCTCTATTTTTTCCTATGTGCTGGGGATTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATAAATTCTCTCCTCTATTTTTTCCTATGTGCTGGGGATTGAG  800

seq1  CCAAATTCTTGCAGATTTTCTACCACTAAGCTACACAACAGTGCTATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCTTGCAGATTTTCTACCACTAAGCTACACAACAGTGCTATTTC  850

seq1  CCAATTTCCTTAAAGGCAGTTATTAAGATACTATTTCTATGACTTGTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCCTTAAAGGCAGTTATTAAGATACTATTTCTATGACTTGTCAC  900

seq1  TTCCATATAGTAGCACAATCATTACTATAGTAAAGTATGTAACATCTCTC  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCCATATAGTAGCACATTCATTACTATAGTAAAGTATGTAACATCTCTC  950

seq1  TACCCCCAAAATTTTCTTATTCCTTTGGAGAGAACTTTTCCCTGCTTATT  1000
      ||||||||||||||||||||||||| |||||||  |||||||||||||||
seq2  TACCCCCAAAATTTTCTTATTCCTTGGGAGAGACTTTTTCCCTGCTTATT  1000

seq1  ACTGATATGTTTCCTTCCACAGTTTATATTTTTGCTATTTAGAATGTCAT  1050
      ||||||||| ||||| |  ||| |  ||||||||||| |||| |||||||
seq2  ACTGATATG-TTCCTCCACCAGCTATTATTTTTGCTA-TTAG-ATGTCAT  1047

seq1  GAAAATAGCCTTTTACATTTTAGTTTCCTTCACTTAGCTCAATATAGTTG  1100
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  GAAAATAGCC-TTTACATTTTAGTTT-CTTCACTTAGCTCAATATAGTTG  1095

seq1  AAGTTT  1106
      ||||||
seq2  AAGTTT  1101