BAC Information

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BAC

Clone NameB6Ng01-210H05
Chromosome2 (Build37)16 (Build37)
Map Location 103,719,196 - 103,719,69355,721,048 - 55,721,968
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCd44, Pdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965
Downstream geneLmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210H05.bB6Ng01-210H05.g
ACCGA028785GA028786
length949929
definitionB6Ng01-210H05.b B6Ng01-210H05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,719,196 - 103,719,693)(55,721,048 - 55,721,968)
sequence
gaattcactgtgtagaccaggctggcctcatgatcctagtgatacatctg
tctctgccttactggtgcaaggctcgggctatgtgccatcaccccccccc
ccacacacacacacacacatttaactttgttatttcttatgttagacaag
ttttcttataaggttttcactatggggtaaacttaatagtcataagaaac
agaaccacctttttttttttttttttcttattggaaaaacaaggaatttg
ctttttttctttttctttttttttttttttaaattcaggagtataattta
aattattttactttctaaaaaaaaaaaattagccagacagtggtggcgca
cgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagtt
cgaggccagcctggtctacaaagtgagttccaggacaggcagagctacac
ggagaaaccctgtctcgaacaaaccaaaaaaataaataaataaattaaaa
taaaataaaataaaaaaattatttgtttacctattttgaggtgagatctc
tcactgtagccctgggaagctttaaactcagtaattcccctgccttagcc
tcccaagtgctggtattacaaacatatgctatcattcttgggctaaaaat
ttgttttaattgataaataagtgcatgtatttagagggtaccttgggacc
tgtagatagaatgatttattaagctaactacatatctgtaacttcatata
cttatttatgggcagtgacatcgtttgggatgcctttgggagagtctaaa
gtatgttattattaaccatggccactctgctgtgactcgaggtgtaactc
agggtgctaggtcttcacagccctggccctttcctcattagcataggtat
cttttgattgactttcttctgttgcttccaaaggtcccctagcttttgg
gaattcagtcccaactttgatggagcaatgacacagcttgaccgaagagc
tgaaaaacccacctggtaactgctgcctttatagcgtgctccgtgtcttc
acagagctcttctgtgtgtggaaaacccaggatctctgttttctttccat
ttgatttcatcaggaaatcaacacatggttttattgtaaaatggttatac
tacaagaatatgcctggaaagagggggacaagaggtttttacataaggaa
aagaaacatggagagtgcagatgaacatacaaaggaagagaaaacaaaag
aaagaactattcaaagacaattcgatagagtcaacaatgagtgtacagta
ggagtaaaaagacaaattatctagtattcaaatgttacaaatataaatct
gggagaaaatggagaagatgcctggacatcctagtccccgagatatgtag
acatctaaggagacagcttttgggtctgcagaaatggaggtgaagatggt
ctacagagctgttctttcaacaaattcattgagacaccagggaagagatt
aaagaaatataatagtggggtaagaggggaaggagaagtgggtttagaag
catagtgaataatgcattgattcccacagaggtattcagtcaagagttta
aacaaacttctctggacaaagtcactgggtatctttaaagggatagtaat
ggagtcctatttctatcttattcttctatggattcatttgcatccctggg
ggatccaggcagcctgtttagagtgtgggaaccagatcacttataatctc
ctttctatatggagatatcaggtgacaaagtaacgcaaaggcaataccag
tgcccttgtaaagcaattctttttacaccttgccagtttgggctccttta
aggagctgtctttagcaaagctttagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_103719196_103719693
seq2: B6Ng01-210H05.b_47_511

seq1  TCACTTTGTAGACCAGGCAGGCCTCA--AACTCAGAAATCTGCCTGCCTC  48
      ||||| |||||||||||| |||||||  | |  ||  ||    ||| |||
seq2  TCACTGTGTAGACCAGGCTGGCCTCATGATCCTAGTGATACATCTGTCTC  50

seq1  TGCCTCCCAAGTGCAGGGATTACAGGC-GTGCGCCACCACGCCCGGCTGT  97
      |||||  |  ||||| || |  | |||  || |||| ||| ||       
seq2  TGCCTTACTGGTGCAAGGCT--CGGGCTATGTGCCATCACCCC-------  91

seq1  CTTTCTTTCTGTCTCTCTGTGTCTCTTTCTGTCTGTCTCTCTGTCTCTCT  147
                                                    | | 
seq2  ----------------------------------------------CCCC  95

seq1  CTCATAAGCACACACACACACACAT---ACATTGGGATTCAATTCTTTCA  194
      | ||    |||||||||||||||||   || |||    | | |||||   
seq2  CCCA----CACACACACACACACATTTAACTTTG----TTATTTCTTATG  137

seq1  CTCGTATCAATTTTT---------TTTTCCCT------GAAACT---TTC  226
       | |   ||| ||||         ||||| ||       |||||   |  
seq2  TTAG--ACAAGTTTTCTTATAAGGTTTTCACTATGGGGTAAACTTAATAG  185

seq1  TCAAAAGAAGC-TCGTCACATTTTCAAACAAGTAAGACCTTTCCCCTAAT  275
      ||| ||||| |     ||| ||||        |      |||   || ||
seq2  TCATAAGAAACAGAACCACCTTTT--------TTTTTTTTTTTTTCTTAT  227

seq1  T-----AAAGAGGAA--------TACTCTAAGAACTGAATTTCTTTTCT-  311
      |     ||  |||||        |  |||      |   ||| |||| | 
seq2  TGGAAAAACAAGGAATTTGCTTTTTTTCTTTTTCTTTTTTTTTTTTTTTA  277

seq1  AACTCAGG----------AAATTATTGGCTGATTTCTTGGCAAGCAAATC  351
      || |||||          ||||||||      || |||   ||  |||  
seq2  AATTCAGGAGTATAATTTAAATTATT------TTACTTTCTAAAAAAA--  319

seq1  TCAATAAAT-GCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTG  400
        || || | ||| | | ||||||||||||||||||||||||||||||||
seq2  --AAAAATTAGCCAGACAGTGGTGGCGCACGCCTTTAATCCCAGCACTTG  367

seq1  GGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAA  450
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAA  417

seq1  AGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAA  498
      ||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  AGTGAGTTCCAGGACAGGCAGAGCTACACGGAGAAACCCTGTCTCGAA  465

seq1: chr16_55721048_55721968
seq2: B6Ng01-210H05.g_67_995

seq1  GAATTCAGTCCCAACTTTGATGGAGCAATGACACAGCTTGACCGAAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCAACTTTGATGGAGCAATGACACAGCTTGACCGAAGAGC  50

seq1  TGAAAAACCCACCTGGTAACTGCTGCCTTTATAGCGTGCTCCGTGTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACCCACCTGGTAACTGCTGCCTTTATAGCGTGCTCCGTGTCTTC  100

seq1  ACAGAGCTCTTCTGTGTGTGGAAAACCCAGGATCTCTGTTTTCTTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTCTTCTGTGTGTGGAAAACCCAGGATCTCTGTTTTCTTTCCAT  150

seq1  TTGATTTCATCAGGAAATCAACACATGGTTTTATTGTAAAATGGTTATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCATCAGGAAATCAACACATGGTTTTATTGTAAAATGGTTATAC  200

seq1  TACAAGAATATGCCTGGAAAGAGGGGGACAAGAGGTTTTTACATAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAATATGCCTGGAAAGAGGGGGACAAGAGGTTTTTACATAAGGAA  250

seq1  AAGAAACATGGAGAGTGCAGATGAACATACAAAGGAAGAGAAAACAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATGGAGAGTGCAGATGAACATACAAAGGAAGAGAAAACAAAAG  300

seq1  AAAGAACTATTCAAAGACAATTCGATAGAGTCAACAATGAGTGTACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTATTCAAAGACAATTCGATAGAGTCAACAATGAGTGTACAGTA  350

seq1  GGAGTAAAAAGACAAATTATCTAGTATTCAAATGTTACAAATATAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAAAAGACAAATTATCTAGTATTCAAATGTTACAAATATAAATCT  400

seq1  GGGAGAAAATGGAGAAGATGCCTGGACATCCTAGTCCCCGAGATATGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAATGGAGAAGATGCCTGGACATCCTAGTCCCCGAGATATGTAG  450

seq1  ACATCTAAGGAGACAGCTTTTGGGTCTGCAGAAATGGAGGTGAAGATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAAGGAGACAGCTTTTGGGTCTGCAGAAATGGAGGTGAAGATGGT  500

seq1  CTACAGAGCTGTTCTTTCAACAAATTCATTGAGACACCAGGGAAGAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGCTGTTCTTTCAACAAATTCATTGAGACACCAGGGAAGAGATT  550

seq1  AAAGAAATATAATAGTGGGGTAAGAGGGGAAGGAGAAGTGGGTTTAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATATAATAGTGGGGTAAGAGGGGAAGGAGAAGTGGGTTTAGAAG  600

seq1  CATAGTGAATAATGCATTGATTCCCACAGAGGTATTCAGTCAAGAG-TTA  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATAGTGAATAATGCATTGATTCCCACAGAGGTATTCAGTCAAGAGTTTA  650

seq1  AACAAACTTCTCTGGACAAAGTCACTGGGTATCTTTAAAGGGATAGTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTTCTCTGGACAAAGTCACTGGGTATCTTTAAAGGGATAGTAAT  700

seq1  GGAGTCCTATTTCTATCTTATTCTTCTATGGATTCATTTGCATCCCT-GG  748
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGAGTCCTATTTCTATCTTATTCTTCTATGGATTCATTTGCATCCCTGGG  750

seq1  GGATCCAGGCAGCCTGTTTAGAGTGTGGGAACCAGATCAC-TATAATCTC  797
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGATCCAGGCAGCCTGTTTAGAGTGTGGGAACCAGATCACTTATAATCTC  800

seq1  C-TTCTATATGGAGATATCAGGTGACAAAGTAACGCAAAGCAAATACCAG  846
      | ||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  CTTTCTATATGGAGATATCAGGTGACAAAGTAACGCAAAGGCAATACCAG  850

seq1  TG-CCTTGTAAAGCAATTC-TTTTACACCTTGCAAGTTTGGGCTCC-TTA  893
      || |||||||||||||||| ||||||||||||| |||||||||||| |||
seq2  TGCCCTTGTAAAGCAATTCTTTTTACACCTTGCCAGTTTGGGCTCCTTTA  900

seq1  AGGAGCTGTCTTTAGCAAAGC-TTAGAAA  921
      ||||||||||||||||||||| |||||||
seq2  AGGAGCTGTCTTTAGCAAAGCTTTAGAAA  929