BAC Information

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BAC

Clone NameB6Ng01-210L17
Chromosome2 (Build37)
Map Location 156,499,120 - 156,639,113
singlet/doubletdoublet
Overlap geneDlgap4, Myl9, LOC433546
Upstream geneTrpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
Downstream geneTgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210L17.bB6Ng01-210L17.g
ACCGA028994GA028995
length625878
definitionB6Ng01-210L17.b B6Ng01-210L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,499,120 - 156,499,744)(156,638,239 - 156,639,113)
sequence
gaattccagacccttctgggccccttttagctctacttgagcaagaactg
gcaggttggggcgtcgggcgccatccgctcccatatgcttcctgctattt
aggggaaaactctcctcgcgttcctccaaccacacgggctgacatttcca
gacagacgctggaaccagctctttggaggattggcagataaatttggccc
aggctgttgggaaaatcttgagtcttgctggggaattggagcccaggctt
gccgacttctgttcactctgagacttctgggcctctcatcctctgtgggg
ttgcagattagggtaagtctgcccagctcaacccttcccaggagagtgcc
tagagggccaggatatgttggcttccagcttttcctcagaggtagcagga
aggcagtagagacttctctatcacacaccacaggccacctgggtgtggct
cagctcaccttggcagatgacagtcagaattagagagatcagagctctag
acacttcctgtctgtgtcatctcccagagatggtgccatttctctgagac
tcttttagttcatctgtaaaatggggcaatggtagatctgtctggtgaaa
aagctgtgggggttgggggtgggga
gaattctaggcacataggagccttgtgatgcagacactggcaataaaacc
cagttcctctgcgagagcagagagcagccggcactcctaacttctgagcc
agctctccatccctgaaggccagttttgaccttgaattttgtttttcccc
ccaaagatagatagggaggggaggcagagagagagagagagagagaaaga
gagagagagagagagagcgagagagagagaatgtgtgagtgcctacatgg
catgtatgtgggcatgtgtgtgagggtacttaagtaaactgctatgtagg
agctgggaattgaacccatgtcctctggaagagtagccagtgctgttgat
cactgagccgtctgtctattgtctaatctcagcgtgtttcctccttaaag
gtaaagaacacttactatgtttccatagtctgtgcttagagcaagagcct
gctggaaggtcttggtcagggtggtgtcatggctggaggaacttgacaac
cagttacctgacgtttcttgtggtaggtgtgaggcttggctggggaatac
caggaatcctgctcagggggctttgttcatcctcttgtgtgcttcagata
ccctagtttttctatctgcagatttttttttttttaaagatttatttatt
atatgtaagtacactgtcttcagacacaccagaagagggcatcagatctc
gttacggatggttgtgagccaccatgtggttgctgggatttgaactctgg
gaccttttggaagagcagtcaggtgctcttacccactgagccattcttac
cagcccctatctgcagattttaaacggaagacttaatattggtgttcaca
taaagccaggatgctaggggtgaaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_156499120_156499744
seq2: B6Ng01-210L17.b_49_673

seq1  GAATTCCAGACCCTTCTGGGCCCCTTTTAGCTCTACTTGAGCAAGAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCCTTCTGGGCCCCTTTTAGCTCTACTTGAGCAAGAACTG  50

seq1  GCAGGTTGGGGCGTCGGGCGCCATCCGCTCCCATATGCTTCCTGCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTGGGGCGTCGGGCGCCATCCGCTCCCATATGCTTCCTGCTATTT  100

seq1  AGGGGAAAACTCTCCTCGCGTTCCTCCAACCACACGGGCTGACATTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAACTCTCCTCGCGTTCCTCCAACCACACGGGCTGACATTTCCA  150

seq1  GACAGACGCTGGAACCAGCTCTTTGGAGGATTGGCAGATAAATTTGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACGCTGGAACCAGCTCTTTGGAGGATTGGCAGATAAATTTGGCCC  200

seq1  AGGCTGTTGGGAAAATCTTGAGTCTTGCTGGGGAATTGGAGCCCAGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTGGGAAAATCTTGAGTCTTGCTGGGGAATTGGAGCCCAGGCTT  250

seq1  GCCGACTTCTGTTCACTCTGAGACTTCTGGGCCTCTCATCCTCTGTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTTCTGTTCACTCTGAGACTTCTGGGCCTCTCATCCTCTGTGGGG  300

seq1  TTGCAGATTAGGGTAAGTCTGCCCAGCTCAACCCTTCCCAGGAGAGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATTAGGGTAAGTCTGCCCAGCTCAACCCTTCCCAGGAGAGTGCC  350

seq1  TAGAGGGCCAGGATATGTTGGCTTCCAGCTTTTCCTCAGAGGTAGCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGCCAGGATATGTTGGCTTCCAGCTTTTCCTCAGAGGTAGCAGGA  400

seq1  AGGCAGTAGAGACTTCTCTATCACACACCACAGGCCACCTGGGTGTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTAGAGACTTCTCTATCACACACCACAGGCCACCTGGGTGTGGCT  450

seq1  CAGCTCACCTTGGCAGATGACAGTCAGAATTAGAGAGATCAGAGCTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACCTTGGCAGATGACAGTCAGAATTAGAGAGATCAGAGCTCTAG  500

seq1  ACACTTCCTGTCTGTGTCATCTCCCAGAGATGGTGCCATTTCTCTGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCTGTCTGTGTCATCTCCCAGAGATGGTGCCATTTCTCTGAGAC  550

seq1  TCTTTTAGTTCATCTGTAAAATGGGGCAATGGTAGATCTGTCTGGTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGTTCATCTGTAAAATGGGGCAATGGTAGATCTGTCTGGTGAAA  600

seq1  AAGCTGTGGGGGTTGGGGGTGGGGA  625
      |||||||||||||||||||||||||
seq2  AAGCTGTGGGGGTTGGGGGTGGGGA  625

seq1: chr2_156638239_156639113
seq2: B6Ng01-210L17.g_65_942 (reverse)

seq1  AGCTTTCACCCCTAACATCCTGGGCTTTATGTGAACCACCAATA-TCAGT  49
      |||||||||||||| |||||| ||||||||||||| |||||||| | |||
seq2  AGCTTTCACCCCTAGCATCCT-GGCTTTATGTGAA-CACCAATATTAAGT  48

seq1  CTTCC-TTTAAAATCTGCAGATAGGGGCTGGTAAG-ATGGCTCAGTGGGT  97
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTCCGTTTAAAATCTGCAGATAGGGGCTGGTAAGAATGGCTCAGTGGGT  98

seq1  AAGAGCACCTGACTGCTCTTCC-AAAGGT-CCAGAGTTCAAATCCCAGCA  145
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  AAGAGCACCTGACTGCTCTTCCAAAAGGTCCCAGAGTTCAAATCCCAGCA  148

seq1  ACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGATGCCCTCTTCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGATGCCCTCTTCT  198

seq1  GGTGTGTCTGAAGACAGTGTACTTACATATAATAAATAAATCTTTAAAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTGAAGACAGTGTACTTACATATAATAAATAAATCTTTAAAAA  248

seq1  AAAAAAAATCTGCAGATAGAAAAACTAGGGTATCTGAAGCACACAAGAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCTGCAGATAGAAAAACTAGGGTATCTGAAGCACACAAGAGG  298

seq1  ATGAACAAAGCCCCCTGAGCAGGATTCCTGGTATTCCCCAGCCAAGCCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAAGCCCCCTGAGCAGGATTCCTGGTATTCCCCAGCCAAGCCTC  348

seq1  ACACCTACCACAAGAAACGTCAGGTAACTGGTTGTCAAGTTCCTCCAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACCACAAGAAACGTCAGGTAACTGGTTGTCAAGTTCCTCCAGCC  398

seq1  ATGACACCACCCTGACCAAGACCTTCCAGCAGGCTCTTGCTCTAAGCACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACCACCCTGACCAAGACCTTCCAGCAGGCTCTTGCTCTAAGCACA  448

seq1  GACTATGGAAACATAGTAAGTGTTCTTTACCTTTAAGGAGGAAACACGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGGAAACATAGTAAGTGTTCTTTACCTTTAAGGAGGAAACACGCT  498

seq1  GAGATTAGACAATAGACAGACGGCTCAGTGATCAACAGCACTGGCTACTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAGACAATAGACAGACGGCTCAGTGATCAACAGCACTGGCTACTC  548

seq1  TTCCAGAGGACATGGGTTCAATTCCCAGCTCCTACATAGCAGTTTACTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGACATGGGTTCAATTCCCAGCTCCTACATAGCAGTTTACTTA  598

seq1  AGTACCCTCACACACATGCCCACATACATGCCATGTAGGCACTCACACAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCTCACACACATGCCCACATACATGCCATGTAGGCACTCACACAT  648

seq1  TCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTC  698

seq1  TCTCTGCCTCCCCTCCCTATCTATCTTTGGGGGGAAAAACAAAATTCAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCCCCTCCCTATCTATCTTTGGGGGGAAAAACAAAATTCAAG  748

seq1  GTCAAAACTGGCCTTCAGGGATGGAGAGCTGGCTCAGAAGTTAGGAGTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACTGGCCTTCAGGGATGGAGAGCTGGCTCAGAAGTTAGGAGTGC  798

seq1  CGGCTGCTCTCTGCTCTCGCAGAGGAACTGGGTTTTATTGCCAGTGTCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCTCTCTGCTCTCGCAGAGGAACTGGGTTTTATTGCCAGTGTCTG  848

seq1  CATCACAAGGCTCCTATGTGCCTAGAATTC  875
      ||||||||||||||||||||||||||||||
seq2  CATCACAAGGCTCCTATGTGCCTAGAATTC  878