BAC Information

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BAC

Clone NameB6Ng01-210N13
Chromosome2 (Build37)
Map Location 33,344,213 - 33,487,132
singlet/doubletdoublet
Overlap geneLOC676764, Lmx1b
Upstream geneC230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43
Downstream geneLOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210N13.bB6Ng01-210N13.g
ACCGA029075GA029076
length5291,010
definitionB6Ng01-210N13.b B6Ng01-210N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,486,604 - 33,487,132)(33,344,213 - 33,345,203)
sequence
tccgatccaggacgggctgggctggagcccggaacccggggcctcgccac
agctcttgggttccttcgcagttaaggaatcttccgaagcttggaggctc
ttcggggctggaggccgggtgcccggtgggatggagcgcccacacggagt
cggggagcggcacccctaggaaccattaaaggggccaactggagggagca
ggctgatggcgagaacaggctttaagattctcgccccagccccccagccc
actcctttgggcaagcacgggagcaagtcggggagagttgttgatctagg
gagtagaacattgaaggaaagcctgtaagatctttttcccgcctgagaaa
tgtcccaagtgcctctgctcctgaagctggcgaaggggcccgcaacagag
tcctcagcacggctgcgtgcgcaagcagaattaccccccaccccctcccc
gagtaccagcaccgtaccagccgaacgtttttttcccccctttccagatt
tggtttgcagggatgtgggggtgtggttg
gaattcttgccagacgtggtggtgcacgcctttaatcccagcactcggga
ggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagt
gagttccaggacagcctgggctatacagagaaaccttgtctcgaaaaaaa
taaaaaagattggctttagacaccggtgtgtcatttcttgtcttgttaac
tgtcactggctagtgtcttgggttgcccacatccctaaccaagcatagca
cgcagtttgacagcaagggctgatgtgtgagaggcatgtccgagccattc
atcagaaagatgccatgacacacagccgcttcatcaactctgcagcatcc
aagagggacagctgggaaagagcctcatgttctaacttcaagatggccgg
aggacacaagaaacgcagccactgttgagagtgggatgcgcacccaagat
caggtctcgagtagatgtgtaagaacatttgtccaatgattttcctcaaa
gcattgcccagtgctgaggggtgtggaattaacaaagttgccatagtgat
tattcaggttcctcctcgtattacatgaaccattttcctctgaagaatac
cgccgtgcaggcgggtgacgtcgcgcagtcagaaaaggtgcgtgtgaagc
ctggtggtctgagttagaaccctgagcccacgtggtggaaaggaagcccc
gcctccctcagtatgctctttggccttcatatgcacactatggcgtatag
gtggacacattcacacaaatatatgcatgcaacaaaagtgttacattgga
aattacgcaacgaaacctctaaagggatggattagccatgtgtggcatat
acaactgatgcgacatttacgttagcttaggctatgtgggcaccggccct
gtttccacacaacagaaaacaagggaaaaacaaaacatgaggggaggtta
ggttgcacaggcctcacactttgaaatttctggtggtccaggaccttccc
cctgccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_33486604_33487132
seq2: B6Ng01-210N13.b_55_583 (reverse)

seq1  CAACCACACCCCCACATCCCTGCAAACCAAATCTGGAAAGGGGGGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACACCCCCACATCCCTGCAAACCAAATCTGGAAAGGGGGGAAAAA  50

seq1  AACGTTCGGCTGGTACGGTGCTGGTACTCGGGGAGGGGGTGGGGGGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCGGCTGGTACGGTGCTGGTACTCGGGGAGGGGGTGGGGGGTAAT  100

seq1  TCTGCTTGCGCACGCAGCCGTGCTGAGGACTCTGTTGCGGGCCCCTTCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGCGCACGCAGCCGTGCTGAGGACTCTGTTGCGGGCCCCTTCGC  150

seq1  CAGCTTCAGGAGCAGAGGCACTTGGGACATTTCTCAGGCGGGAAAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCAGGAGCAGAGGCACTTGGGACATTTCTCAGGCGGGAAAAAGAT  200

seq1  CTTACAGGCTTTCCTTCAATGTTCTACTCCCTAGATCAACAACTCTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGCTTTCCTTCAATGTTCTACTCCCTAGATCAACAACTCTCCCC  250

seq1  GACTTGCTCCCGTGCTTGCCCAAAGGAGTGGGCTGGGGGGCTGGGGCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTCCCGTGCTTGCCCAAAGGAGTGGGCTGGGGGGCTGGGGCGAG  300

seq1  AATCTTAAAGCCTGTTCTCGCCATCAGCCTGCTCCCTCCAGTTGGCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAAGCCTGTTCTCGCCATCAGCCTGCTCCCTCCAGTTGGCCCCT  350

seq1  TTAATGGTTCCTAGGGGTGCCGCTCCCCGACTCCGTGTGGGCGCTCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTTCCTAGGGGTGCCGCTCCCCGACTCCGTGTGGGCGCTCCATC  400

seq1  CCACCGGGCACCCGGCCTCCAGCCCCGAAGAGCCTCCAAGCTTCGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGGGCACCCGGCCTCCAGCCCCGAAGAGCCTCCAAGCTTCGGAAGA  450

seq1  TTCCTTAACTGCGAAGGAACCCAAGAGCTGTGGCGAGGCCCCGGGTTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAACTGCGAAGGAACCCAAGAGCTGTGGCGAGGCCCCGGGTTCCG  500

seq1  GGCTCCAGCCCAGCCCGTCCTGGATCGGA  529
      |||||||||||||||||||||||||||||
seq2  GGCTCCAGCCCAGCCCGTCCTGGATCGGA  529

seq1: chr2_33344213_33345203
seq2: B6Ng01-210N13.g_68_1068

seq1  GAATTCTTGCCAGACGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCAGACGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGA  50

seq1  GGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  100

seq1  GAGTTCCAGGACAGCCTGGGCTATACAGAGAAACCTTGTCTCGAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCCTGGGCTATACAGAGAAACCTTGTCTCGAAAAAAA  150

seq1  TAAAAAAGATTGGCTTTAGACACCGGTGTGTCATTTCTTGTCTTGTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGATTGGCTTTAGACACCGGTGTGTCATTTCTTGTCTTGTTAAC  200

seq1  TGTCACTGGCTAGTGTCTTGGGTTGCCCACATCCCTAACCAAGCATAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGGCTAGTGTCTTGGGTTGCCCACATCCCTAACCAAGCATAGCA  250

seq1  CGCAGTTTGACAGCAAGGGCTGATGTGTGAGAGGCATGTCCGAGCCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTTGACAGCAAGGGCTGATGTGTGAGAGGCATGTCCGAGCCATTC  300

seq1  ATCAGAAAGATGCCATGACACACAGCCGCTTCATCAACTCTGCAGCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAGATGCCATGACACACAGCCGCTTCATCAACTCTGCAGCATCC  350

seq1  AAGAGGGACAGCTGGGAAAGAGCCTCATGTTCTAACTTCAAGATGGCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGACAGCTGGGAAAGAGCCTCATGTTCTAACTTCAAGATGGCCGG  400

seq1  AGGACACAAGAAACGCAGCCACTGTTGAGAGTGGGATGCGCACCCAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAAGAAACGCAGCCACTGTTGAGAGTGGGATGCGCACCCAAGAT  450

seq1  CAGGTCTCGAGTAGATGTGTAAGAACATTTGTCCAATGATTTTCCTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTCGAGTAGATGTGTAAGAACATTTGTCCAATGATTTTCCTCAAA  500

seq1  GCATTGCCCAGTGCTGAGGGGTGTGGAATTAACAAAGTTGCCATAGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCCCAGTGCTGAGGGGTGTGGAATTAACAAAGTTGCCATAGTGAT  550

seq1  TATTCAGGTTCCTCCTCGTATTACATGAACCATTTTCCTCTGAAGAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGTTCCTCCTCGTATTACATGAACCATTTTCCTCTGAAGAATAC  600

seq1  CGCCGTGCAGGCGGGTGACGTCGCGCAGTCAGAAAAGGTGCGTGTGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGTGCAGGCGGGTGACGTCGCGCAGTCAGAAAAGGTGCGTGTGAAGC  650

seq1  CTGGTGGTCTGAGTTAGAACCCTGAGCCCACGTGGTGGAAAGGAAGCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGTCTGAGTTAGAACCCTGAGCCCACGTGGTGGAAAGGAAGCCCC  700

seq1  GCCTCCCTCAGTATGCTCTTTGGCCTTCATATGCACACTATGGCGTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTCAGTATGCTCTTTGGCCTTCATATGCACACTATGGCGTATAG  750

seq1  GTGGACACATTCACACAAATATATGCATGCAACAAAAGTGTTACATTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACATTCACACAAATATATGCATGCAACAAAAGTGTTACATTGGA  800

seq1  AATTACGCAACGAAACCTCTAAA-GGATGGATTAGCCATGTGTGGCATAT  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATTACGCAACGAAACCTCTAAAGGGATGGATTAGCCATGTGTGGCATAT  850

seq1  ACAACTGATGCGACA-TTACG-TAGCTTAGGCTATGT-GGCA-CGGCCCT  895
      ||||||||||||||| ||||| ||||||||||||||| |||| |||||||
seq2  ACAACTGATGCGACATTTACGTTAGCTTAGGCTATGTGGGCACCGGCCCT  900

seq1  G-TTCCACAACAACAGAAAACAA-GGAAAAACAAAACATGAGGGGAGGTT  943
      | |||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  GTTTCCAC-ACAACAGAAAACAAGGGAAAAACAAAACATGAGGGGAGGTT  949

seq1  A-GTTGCACA-GCCTCACCACTTTGAAA-TTCT-GTGGTCCA-GACCTTC  988
      | |||||||| |||||| |||||||||| |||| |||||||| |||||||
seq2  AGGTTGCACAGGCCTCA-CACTTTGAAATTTCTGGTGGTCCAGGACCTTC  998

seq1  CCC  991
      |||
seq2  CCC  1001