BAC Information

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BAC

Clone NameB6Ng01-210O04
Chromosome2 (Build37)
Map Location 115,334,192 - 115,479,785
singlet/doubletdoublet
Overlap geneLOC100043232, LOC100043236, BC052040
Upstream geneAtpbd4, LOC100043219, LOC100043222
Downstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210O04.bB6Ng01-210O04.g
ACCGA029105GA029106
length1,1771,111
definitionB6Ng01-210O04.b B6Ng01-210O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,334,192 - 115,335,369)(115,478,661 - 115,479,785)
sequence
gaattcaaaccaaagcagcaaatggtgtttccaatggccgcttctgctgg
cttccatgacccttttgcatccaacagcacagcaatcatttccaccagga
aactgatttaggtaccaagaccctgagctctgaactccatgggtcatgtc
tagttttgctgtgccctatagaacataatcaccatgatgtcttccagggt
gtgacccacaaataaaggattcacaaataaagaaggctctgttaaataaa
tatcatagagttagtcttctcctctctctgctgctctcatcgttctgtct
gctggttcctcggaagctttcctggctcctggctccaacatctctatatc
tttccagcagaacctctgctaccaggctcctagcttcctactaaatttgc
ttcttggatcccaggctgagccaaccactttctggtcccctaacccgaac
ttgattcaatttgccacctggaccagtgaggtccagcattgtgtttcttc
agaccatagaacaggactgtatttttatgctgtctcataagtaccatata
cttacactatagatttacatgtccttcccagaaaaggaaagagagaacac
aaaaagccatttatttacatgactctgaggaataagttgagggaggaaaa
aaatggtcatatcagagagtttgtatgtctaattttaatacaactaccca
gagcaccaaaaacggtgtcttagggatattaagtgtgaacccaagttcat
gggggcatggtagagaattaaccgtctgtgactgcccacctttcaaggga
aacaaaagtttatcctctgtacttagagtgggagacacctgaacaaagct
ctcaccattaatatgtgaattctgggtactttaggctaaagcaaacactt
aatatgagcaagatatgtaaaagttagggattgctgattgaagaggcatt
ttgatagtggtggacatatcagtggtggtgcctcagcaaagacctctgct
tcttgcatgtgatcgcatggtaatctaaccaactagtgtttctaatgtcc
tgggggagcctgaatcatgtaattacctggtgacatctcattatctcttt
ttcctccacaaaccgcatattatggttacatggacaattaaatacacaaa
ctagctaagtgacgctttatggggttg

gaattctttgggtagatggccagaattacccatatatagctggatcatgt
agtaattctatttttagtttctttctttttcagaaacttccatactgatt
tccattaatggatagactatttgcatccccgccagcagtgcctaggagct
cctcgtccccagatccctgccagcacttgctgtcagttttcttgatgata
gccatcagaatgtctaattagacaggaaatgttgaaaacaccatcaaccc
ctttgccacccatctgtcagccccattttctccagttctttcatctttca
tacttcaaaagatacaatcatctgccttccgagccaaaaggcaggtgagc
agccccaaagaacacggtcaatgtgctgatgacttaaagaacactcaagt
ggtgaaaggcatcgtggacagtaccacatccctcctcattcccagcacag
actctctcctgggaatggtgacaaacttgatgcttcgtgtgtcacaacga
gaccattcacacgtttcacagataatccagcatctcttcattctttgctt
acttcaggtgtgactacagacaggttacagagggggcagtggggtgctgt
gcaccattaaggggcaagagtaactcccagatcacaaccttagtgttctt
acctgctctacacctgtgcacccgaatacacaaaatatcatttcaagact
actcttagacacattgtctagtttttaaaaccaaataagactcaacagtt
tgaaaactgaacagaaacagttataaggaaaatgcaacaaagcaagagat
tagaaaaaacattgaaaactggactttacgagtgctagggcagtgccgcc
gcagctctctgcccaccacctgcgatgcctcccgcacaggaagacattca
gtgagcatacagcagaggtaatagcttacggaggagagggaaatgaatcc
aatcaaaataacccacctttttattttgatttctcctctttaagtgttgc
ctagtattaaaacaatataacaaggtaaagacataaagaataagaaggaa
aaaaaaaaaaataggccaacccaaaccaaacctaggcttctggtagattc
ataaaagttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115334192_115335369
seq2: B6Ng01-210O04.b_46_1222

seq1  GAATTCAAACCAAAGCAGCAAATGGTGTTTCCAATGGCCGCTTCTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCAAAGCAGCAAATGGTGTTTCCAATGGCCGCTTCTGCTGG  50

seq1  CTTCCATGACCCTTTTGCATCCAACAGCACAGCAATCATTTCCACCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGACCCTTTTGCATCCAACAGCACAGCAATCATTTCCACCAGGA  100

seq1  AACTGATTTAGGTACCAAGACCCTGAGCTCTGAACTCCATGGGTCATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTAGGTACCAAGACCCTGAGCTCTGAACTCCATGGGTCATGTC  150

seq1  TAGTTTTGCTGTGCCCTATAGAACATAATCACCATGATGTCTTCCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGCTGTGCCCTATAGAACATAATCACCATGATGTCTTCCAGGGT  200

seq1  GTGACCCACAAATAAAGGATTCACAAATAAAGAAGGCTCTGTTAAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCACAAATAAAGGATTCACAAATAAAGAAGGCTCTGTTAAATAAA  250

seq1  TATCATAGAGTTAGTCTTCTCCTCTCTCTGCTGCTCTCATCGTTCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGAGTTAGTCTTCTCCTCTCTCTGCTGCTCTCATCGTTCTGTCT  300

seq1  GCTGGTTCCTCGGAAGCTTTCCTGGCTCCTGGCTCCAACATCTCTATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTCCTCGGAAGCTTTCCTGGCTCCTGGCTCCAACATCTCTATATC  350

seq1  TTTCCAGCAGAACCTCTGCTACCAGGCTCCTAGCTTCCTACTAAATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCAGAACCTCTGCTACCAGGCTCCTAGCTTCCTACTAAATTTGC  400

seq1  TTCTTGGATCCCAGGCTGAGCCAACCACTTTCTGGTCCCCTAACCCGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGATCCCAGGCTGAGCCAACCACTTTCTGGTCCCCTAACCCGAAC  450

seq1  TTGATTCAATTTGCCACCTGGACCAGTGAGGTCCAGCATTGTGTTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCAATTTGCCACCTGGACCAGTGAGGTCCAGCATTGTGTTTCTTC  500

seq1  AGACCATAGAACAGGACTGTATTTTTATGCTGTCTCATAAGTACCATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAGAACAGGACTGTATTTTTATGCTGTCTCATAAGTACCATATA  550

seq1  CTTACACTATAGATTTACATGTCCTTCCCAGAAAAGGAAAGAGAGAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTATAGATTTACATGTCCTTCCCAGAAAAGGAAAGAGAGAACAC  600

seq1  AAAAAGCCATTTATTTACATGACTCTGAGGAATAAGTTGAGGGAGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCATTTATTTACATGACTCTGAGGAATAAGTTGAGGGAGGAAAA  650

seq1  AAATGGTCATATCAGAGAGTTTGTATGTCTAATTTTAATACAACTACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCATATCAGAGAGTTTGTATGTCTAATTTTAATACAACTACCCA  700

seq1  GAGCACCAAAAACGGTGTCTTAGGGATATTAAGTGTGAACCCAAGTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCAAAAACGGTGTCTTAGGGATATTAAGTGTGAACCCAAGTTCAT  750

seq1  -GGGGCATGGTAGAGAATTAACCGTCTGTGACTGCCCACCTTTCAAGGGA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATGGTAGAGAATTAACCGTCTGTGACTGCCCACCTTTCAAGGGA  800

seq1  AACAAAAGTTTATCCTCTGTACTTAGAGTGGGAGACACCTGAACAAAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGTTTATCCTCTGTACTTAGAGTGGGAGACACCTGAACAAAGCT  850

seq1  CTCACCATTAATATGTGAATTCTGGGTACTTTAGGCTAAAGCAAACACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATTAATATGTGAATTCTGGGTACTTTAGGCTAAAGCAAACACTT  900

seq1  AATATGAGCAAGATATGTAAAAGTTAGGGATTGCTGATTGAAGAGGCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGCAAGATATGTAAAAGTTAGGGATTGCTGATTGAAGAGGCATT  950

seq1  TTGATAGTGGTGGACAATATCAGT-GTGGTGCCTCAGCAAAGACCTCTGC  998
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  TTGATAGTGGTGGAC-ATATCAGTGGTGGTGCCTCAGCAAAGACCTCTGC  999

seq1  TTCTTGCATGTGATCGCATGGTAATCTTACCCAACTAGTGTTTTCTTAAT  1048
      |||||||||||||||||||||||||| || |||||||||||||   ||||
seq2  TTCTTGCATGTGATCGCATGGTAATC-TAACCAACTAGTGTTT--CTAAT  1046

seq1  GTCCT-GGGGAGCCTG-ATCATTGTAAATTACCT-GTGACATCTCATTAA  1095
      ||||| |||||||||| |||| ||| |||||||| |||||||||||||| 
seq2  GTCCTGGGGGAGCCTGAATCA-TGT-AATTACCTGGTGACATCTCATTA-  1093

seq1  TCCTCTTTTTCCT-CACAAA-CGCATAATTAATGGTAACATTGACAAT--  1141
        ||||||||||| |||||| ||||||  | ||||| |||| ||||||  
seq2  -TCTCTTTTTCCTCCACAAACCGCATA--TTATGGTTACATGGACAATTA  1140

seq1  AATACACAAATTAGCTAAGTGACGCTTTATGGTGTTG  1178
      |||||||||| ||||||||||||||||||||| ||||
seq2  AATACACAAACTAGCTAAGTGACGCTTTATGGGGTTG  1177


seq1: chr2_115478661_115479785
seq2: B6Ng01-210O04.g_63_1173 (reverse)

seq1  CTAACTTTTAATGAATCTA-CAGATACCTTAGGTTTTGGTTTTGGTTGGC  49
      ||||||||| ||||||||| |||| | | |||| |||||||| |||||||
seq2  CTAACTTTT-ATGAATCTACCAGA-AGCCTAGG-TTTGGTTTGGGTTGGC  47

seq1  TTTATTTTTTTTTTTTCCCTTTCTTTTTTTTTTTTTTTTTTTTCTTTACC  99
       |  ||||||||||||||         || || || ||| | ||||||||
seq2  CTATTTTTTTTTTTTTCC---------TTCTTATTCTTTATGTCTTTACC  88

seq1  TTGTTATATTGTTTTAATTACTTAGGCAACACTTAAAGAGGAGAAATCAA  149
      ||||||||||||||||| ||| ||||||||||||||||||||||||||||
seq2  TTGTTATATTGTTTTAA-TAC-TAGGCAACACTTAAAGAGGAGAAATCAA  136

seq1  AATAAAAAGGTGGGTTATTTTGATTTGGATTCATTTCCCTCTCCTCCGTA  199
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATAAAAAGGTGGGTTATTTTGA-TTGGATTCATTTCCCTCTCCTCCGTA  185

seq1  AGCTATTACCTCTGCTGTATGCTCACTGAATGTCTTCCTGTGCGGGAGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTACCTCTGCTGTATGCTCACTGAATGTCTTCCTGTGCGGGAGGC  235

seq1  ATCGCAGGTGGTGGGCAGAGAGCTGCGGCGGCACTGCCCTAGCACTCGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCAGGTGGTGGGCAGAGAGCTGCGGCGGCACTGCCCTAGCACTCGTA  285

seq1  AAGTCCAGTTTTCAATGTTTTTTCTAATCTCTTGCTTTGTTGCATTTTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGTTTTCAATGTTTTTTCTAATCTCTTGCTTTGTTGCATTTTCC  335

seq1  TTATAACTGTTTCTGTTCAGTTTTCAAACTGTTGAGTCTTATTTGGTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTGTTTCTGTTCAGTTTTCAAACTGTTGAGTCTTATTTGGTTTT  385

seq1  AAAAACTAGACAATGTGTCTAAGAGTAGTCTTGAAATGATATTTTGTGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAGACAATGTGTCTAAGAGTAGTCTTGAAATGATATTTTGTGTA  435

seq1  TTCGGGTGCACAGGTGTAGAGCAGGTAAGAACACTAAGGTTGTGATCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGTGCACAGGTGTAGAGCAGGTAAGAACACTAAGGTTGTGATCTGG  485

seq1  GAGTTACTCTTGCCCCTTAATGGTGCACAGCACCCCACTGCCCCCTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTCTTGCCCCTTAATGGTGCACAGCACCCCACTGCCCCCTCTGT  535

seq1  AACCTGTCTGTAGTCACACCTGAAGTAAGCAAAGAATGAAGAGATGCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCTGTAGTCACACCTGAAGTAAGCAAAGAATGAAGAGATGCTGG  585

seq1  ATTATCTGTGAAACGTGTGAATGGTCTCGTTGTGACACACGAAGCATCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGTGAAACGTGTGAATGGTCTCGTTGTGACACACGAAGCATCAA  635

seq1  GTTTGTCACCATTCCCAGGAGAGAGTCTGTGCTGGGAATGAGGAGGGATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCACCATTCCCAGGAGAGAGTCTGTGCTGGGAATGAGGAGGGATG  685

seq1  TGGTACTGTCCACGATGCCTTTCACCACTTGAGTGTTCTTTAAGTCATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGTCCACGATGCCTTTCACCACTTGAGTGTTCTTTAAGTCATCA  735

seq1  GCACATTGACCGTGTTCTTTGGGGCTGCTCACCTGCCTTTTGGCTCGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTGACCGTGTTCTTTGGGGCTGCTCACCTGCCTTTTGGCTCGGAA  785

seq1  GGCAGATGATTGTATCTTTTGAAGTATGAAAGATGAAAGAACTGGAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGATTGTATCTTTTGAAGTATGAAAGATGAAAGAACTGGAGAAA  835

seq1  ATGGGGCTGACAGATGGGTGGCAAAGGGGTTGATGGTGTTTTCAACATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTGACAGATGGGTGGCAAAGGGGTTGATGGTGTTTTCAACATTT  885

seq1  CCTGTCTAATTAGACATTCTGATGGCTATCATCAAGAAAACTGACAGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTAATTAGACATTCTGATGGCTATCATCAAGAAAACTGACAGCAA  935

seq1  GTGCTGGCAGGGATCTGGGGACGAGGAGCTCCTAGGCACTGCTGGCGGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGCAGGGATCTGGGGACGAGGAGCTCCTAGGCACTGCTGGCGGGG  985

seq1  ATGCAAATAGTCTATCCATTAATGGAAATCAGTATGGAAGTTTCTGAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATAGTCTATCCATTAATGGAAATCAGTATGGAAGTTTCTGAAAA  1035

seq1  AGAAAGAAACTAAAAATAGAATTACTACATGATCCAGCTATATATGGGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAACTAAAAATAGAATTACTACATGATCCAGCTATATATGGGTA  1085

seq1  ATTCTGGCCATCTACCCAAAGAATTC  1125
      ||||||||||||||||||||||||||
seq2  ATTCTGGCCATCTACCCAAAGAATTC  1111


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