BAC Information

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BAC

Clone NameB6Ng01-211D09
Chromosome2 (Build37)
Map Location 94,917,500 - 95,021,095
singlet/doubletdoublet
Overlap genenone
Upstream geneHsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211D09.bB6Ng01-211D09.g
ACCGA029343GA029344
length7581,170
definitionB6Ng01-211D09.b B6Ng01-211D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,917,500 - 94,918,255)(95,019,912 - 95,021,095)
sequence
gaattcttttttttttcccttgtacaaattgaaaggcccttggggaggaa
gggtgcagaatagatgaccgggttccctcattggttgtgattgtccttct
tgtctcaagcttctgtctgctcatacttgttccttactgaactgtgaaat
tggaatggggagtggagtgttgcttttccactgctgacacttttcttgtg
atggagcacactgaagggagactgcttttggagctgaagaaggggacgtg
gcaagtgacacatactcatggcatgcaatagtgggctgaatttatttggg
attatcaaatcttggctttctcctactctaaaaatgtatacacaagaaaa
tgatgtcttcatggttactataaatattgttacatggaggctttaaacat
gaaaagttctttcaaaatcacatctaagtagctcattgcctactctttga
agtaactacatgaaggtaatatagtatgtgatgctttcaaagtgtggaaa
atctccaagtagctaattggcattcctagattgaacaaaatgagacttct
acaggctgcttctaaactactgcaccagctatctagtgccacagtgatgc
tacacacaaataattcataaaattttatgagtgtggaacaatgaaagcat
ttgtgagttttcagctgctctgacctggatctacaataatctcagctgtg
tctgctcaggtgtctacactcagctgcagttttataggtaggtttttttt
gggggggg
gaattcatgaactttatgaccctgaccaaagcaattgctactctcaagac
ttctctgatgctctttaatcaatatacagtgatccatctctttctctggg
tttaatagccaacttttgattgagcccaatggagatcaaatatcgcagat
aaataaacatctgtagattttttcatgtcatcatgttctaatatacaata
tatctatagttatagatttaacattgtagtaggcattacaattaatatga
taatttaaaatatgtgatgatatatgtgttatttgcaaagactaaatcat
tttatagaaaatgatctgtgcatcttcagattttgctacctaagagagtc
taggatccagtctttcgtgggtactgaggggcagccatgtgtaaattaga
cagatctttatggacctttaccctggaggaagttctaaggggcatggaac
atggacctcaaatgctcagcatattgtataccaaggtaggctcaggcatc
tggtcagtcatctgacatgtaattatcccatatcttccttttctgcttat
gaacaatgattatgggagacacagactttttctcaaggaagcacaattga
ggcatctgtgctacttcaaagtcagtaagcagctggactgccacttatac
ctattgggagagggaaaatcagttttctctaatagaaatgtcaatgggta
tatcaaacgttctgagacgggcctcatgtttaagagtagttggccaacac
ataatggattccacagtgtttttgtatacttttatttggttacgttttga
tggtttgttaattttttttttctttttggatgtggtttagaaggttttgt
tttcttggtttcagaaggttttgttgtgttgtgcttttgtttgttagaaa
gaatttcagctagttaagtagggagggtgagaggatatagacttgagagg
atatagaatatgatcaactatatttaaagttaaaagtgttttcaataata
aagtatatgtattttaaaaagtctcattgctcaagtgcatgtcagctagc
ctaggcaagcactactcaactgccatgtaggcccagaacgataccttctg
aaggccttgattcctcatagcttgaacctgatcccccatctgttaggaat
ccatctaattctgccctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_94917500_94918255
seq2: B6Ng01-211D09.b_47_804

seq1  GAATTCTTTTTTTTTTCCCTTGTACAAATTGAAAGGCCCTTGGGGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTCCCTTGTACAAATTGAAAGGCCCTTGGGGAGGAA  50

seq1  GGGTGCAGAATAGATGACCGGGTTCCCTCATTGGTTGTGATTGTCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAGAATAGATGACCGGGTTCCCTCATTGGTTGTGATTGTCCTTCT  100

seq1  TGTCTCAAGCTTCTGTCTGCTCATACTTGTTCCTTACTGAACTGTGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAGCTTCTGTCTGCTCATACTTGTTCCTTACTGAACTGTGAAAT  150

seq1  TGGAATGGGGAGTGGAGTGTTGCTTTTCCACTGCTGACACTTTTCTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGGGAGTGGAGTGTTGCTTTTCCACTGCTGACACTTTTCTTGTG  200

seq1  ATGGAGCACACTGAAGGGAGACTGCTTTTGGAGCTGAAGAAGGGGACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCACACTGAAGGGAGACTGCTTTTGGAGCTGAAGAAGGGGACGTG  250

seq1  GCAAGTGACACATACTCATGGCATGCAATAGTGGGCTGAATTTATTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGACACATACTCATGGCATGCAATAGTGGGCTGAATTTATTTGGG  300

seq1  ATTATCAAATCTTGGCTTTCTCCTACTCTAAAAATGTATACACAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAATCTTGGCTTTCTCCTACTCTAAAAATGTATACACAAGAAAA  350

seq1  TGATGTCTTCATGGTTACTATAAATATTGTTACATGGAGGCTTTAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTTCATGGTTACTATAAATATTGTTACATGGAGGCTTTAAACAT  400

seq1  GAAAAGTTCTTTCAAAATCACATCTAAGTAGCTCATTGCCTACTCTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTCTTTCAAAATCACATCTAAGTAGCTCATTGCCTACTCTTTGA  450

seq1  AGTAACTACATGAAGGTAATATAGTATGTGATGCTTTCAAAGTGTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTACATGAAGGTAATATAGTATGTGATGCTTTCAAAGTGTGGAAA  500

seq1  ATCTCCAAGTAGCTAATTGGCATTCCTAGATTGAACAAAATGAGACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAGTAGCTAATTGGCATTCCTAGATTGAACAAAATGAGACTTCT  550

seq1  ACAGGCTGCTTCTAAACTACTGCACCAGCTATCTAGTGCCACAGTGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGCTTCTAAACTACTGCACCAGCTATCTAGTGCCACAGTGATGC  600

seq1  TACACACAAATAA-TCATAAAATTTTATGAGTGTGGAACAATGAAAGCAT  649
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACACACAAATAATTCATAAAATTTTATGAGTGTGGAACAATGAAAGCAT  650

seq1  TTGTGAG-TTTCAGCTGCTCTGACCTGGATCTACAATAATCTCAGCTGTG  698
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTTTTCAGCTGCTCTGACCTGGATCTACAATAATCTCAGCTGTG  700

seq1  TCTGCTCAGGTGTCTACACTCAGCTGCAG-TTTATAGGTAGGTTTTTTTT  747
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGCTCAGGTGTCTACACTCAGCTGCAGTTTTATAGGTAGGTTTTTTTT  750

seq1  TGGGGGGGG  756
       ||||||| 
seq2  GGGGGGGG-  758

seq1: chr2_95019912_95021095
seq2: B6Ng01-211D09.g_66_1235 (reverse)

seq1  GAGA-GGCAGAATTAG-TGAAATCATAACAGAATGGTGGAAACAAGTGTC  48
      |||| ||||||||||| || | || |||||| |||| || | || ||   
seq2  GAGAGGGCAGAATTAGATGGATTCCTAACAG-ATGG-GGGATCAGGT---  45

seq1  TCAGAGCTATGA-GAACCAGAGCTTTTCAGAAGGTATTG-TCTTGGCCTC  96
      ||| |||||||| ||| || ||   |||||||||||| | ||| ||||| 
seq2  TCA-AGCTATGAGGAATCA-AGGCCTTCAGAAGGTATCGTTCTGGGCCTA  93

seq1  CATGCCAGCTGAAGGTAGTGGCTTGGCCTAGGCTAGCTGACATGCACTTG  146
      |||| ||| |||  ||||| |||| |||||||||||||||||||||||||
seq2  CATGGCAGTTGA--GTAGT-GCTT-GCCTAGGCTAGCTGACATGCACTTG  139

seq1  AGCAAATGAGACTTTTTTAAAAATTACATTATACTTTTATTATTGAAAAC  196
      ||| |||||||||||||   ||| |||| ||||| |||||||||||||||
seq2  AGC-AATGAGACTTTTT---AAAATACA-TATAC-TTTATTATTGAAAAC  183

seq1  TATTTTTAAATTTAAATATAGTTTGATCATATTCTATATCCTCTCAAGTC  246
       | |||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  -ACTTTTAACTTTAAATATAG-TTGATCATATTCTATATCCTCTCAAGTC  231

seq1  TATATCCTCTCACCCTCCCTACTTAACTAGCTGAAATTCTTTCTAACAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTCTCACCCTCCCTACTTAACTAGCTGAAATTCTTTCTAACAAA  281

seq1  CAAAAGCACAACACAACAAAACCTTCTGAAACCAAGAAAACAAAACCTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCACAACACAACAAAACCTTCTGAAACCAAGAAAACAAAACCTTC  331

seq1  TAAACCACATCCAAAAAG-AAAAAAAAATTAACAAACCATCAAAACGTAA  395
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAACCACATCCAAAAAGAAAAAAAAAATTAACAAACCATCAAAACGTAA  381

seq1  CCAAATAAAAGTATACAAAAACACTGTGGAATCCATTATGTGTTGGCCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAAAGTATACAAAAACACTGTGGAATCCATTATGTGTTGGCCAA  431

seq1  CTACTCTTAAACATGAGGCCCGTCTCAGAACGTTTGATATACCCATTGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTTAAACATGAGGCCCGTCTCAGAACGTTTGATATACCCATTGAC  481

seq1  ATTTCTATTAGAGAAAACTGATTTTCCCTCTCCCAATAGGTATAAGTGGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTAGAGAAAACTGATTTTCCCTCTCCCAATAGGTATAAGTGGC  531

seq1  AGTCCAGCTGCTTACTGACTTTGAAGTAGCACAGATGCCTCAATTGTGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCTGCTTACTGACTTTGAAGTAGCACAGATGCCTCAATTGTGCT  581

seq1  TCCTTGAGAAAAAGTCTGTGTCTCCCATAATCATTGTTCATAAGCAGAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGAAAAAGTCTGTGTCTCCCATAATCATTGTTCATAAGCAGAAA  631

seq1  AGGAAGATATGGGATAATTACATGTCAGATGACTGACCAGATGCCTGAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATATGGGATAATTACATGTCAGATGACTGACCAGATGCCTGAGC  681

seq1  CTACCTTGGTATACAATATGCTGAGCATTTGAGGTCCATGTTCCATGCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGGTATACAATATGCTGAGCATTTGAGGTCCATGTTCCATGCCC  731

seq1  CTTAGAACTTCCTCCAGGGTAAAGGTCCATAAAGATCTGTCTAATTTACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACTTCCTCCAGGGTAAAGGTCCATAAAGATCTGTCTAATTTACA  781

seq1  CATGGCTGCCCCTCAGTACCCACGAAAGACTGGATCCTAGACTCTCTTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGCCCCTCAGTACCCACGAAAGACTGGATCCTAGACTCTCTTAG  831

seq1  GTAGCAAAATCTGAAGATGCACAGATCATTTTCTATAAAATGATTTAGTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAATCTGAAGATGCACAGATCATTTTCTATAAAATGATTTAGTC  881

seq1  TTTGCAAATAACACATATATCATCACATATTTTAAATTATCATATTAATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATAACACATATATCATCACATATTTTAAATTATCATATTAATT  931

seq1  GTAATGCCTACTACAATGTTAAATCTATAACTATAGATATATTGTATATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCCTACTACAATGTTAAATCTATAACTATAGATATATTGTATATT  981

seq1  AGAACATGATGACATGAAAAAATCTACAGATGTTTATTTATCTGCGATAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGATGACATGAAAAAATCTACAGATGTTTATTTATCTGCGATAT  1031

seq1  TTGATCTCCATTGGGCTCAATCAAAAGTTGGCTATTAAACCCAGAGAAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCCATTGGGCTCAATCAAAAGTTGGCTATTAAACCCAGAGAAAG  1081

seq1  AGATGGATCACTGTATATTGATTAAAGAGCATCAGAGAAGTCTTGAGAGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATCACTGTATATTGATTAAAGAGCATCAGAGAAGTCTTGAGAGT  1131

seq1  AGCAATTGCTTTGGTCAGGGTCATAAAGTTCATGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGCTTTGGTCAGGGTCATAAAGTTCATGAATTC  1170