BAC Information

Click to search

BAC

Clone NameB6Ng01-211D10
Chromosome2 (Build37)
Map Location 53,937,708 - 54,092,729
singlet/doubletdoublet
Overlap geneRprm
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneLOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211D10.bB6Ng01-211D10.g
ACCGA029345GA029346
length1,178883
definitionB6Ng01-211D10.b B6Ng01-211D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,091,532 - 54,092,729)(53,937,708 - 53,938,594)
sequence
gaattcaatttacctcaaaagtaccatctacctcaaagtattttaaactt
atttcaggaatgcacggagttgggctcaggattctcccacctgagaatga
gaatagtagcatagatattggggaaattgcaaaaaaaagttatgattgat
tgtcttcagccatcgagctaatagttctaatgtaaagttcttttatcttg
aaccttttataagaaccccaaagttattctatacaataaagtatataaat
tccagctttctctaactgacttgtttcgctaatattcattacatttttct
tttcctcctcttccctcctcctcttattgttctggtctatctcattctcc
atactatatttgcatcttctagatttcaacattgcctttcctccctcctt
ttaaatgtgacctgattatagtaacaactcataacataagatctgtcctt
ttataataacttcaggtataccatattggttgttaatacagggaccgcat
catgtaccaagtctatgtgacaattatactgcttttctgctccctttttt
gttcatacacttgatttttttcatagagatcaattaaatcctctttcata
tgttggccaagtcaggccccaaggcacgtgtttaattacagaagatgcaa
atgtacacaagtaccaatgacattgctggtgcacttcaaaggagagccct
tctgaaatagtttgaatcagttaaggctatttgtttaacatacttggtag
ccaaggatcatggaaaccctctttattatttgcatagcattctaagttat
ttagttctgtggatttttccccttatgtcttgaatgttgttatcatgatt
aaagaaaaataacgatttcattggaaatagagcaacactacagtctttct
tttctttttcttttgaagaagtagtaatattttctcaaattggtgataga
tgcttttgagttatggggaaacattattttcattcagttaatagacatta
ttttgaaaattctctaggagtccatatagagataagtatgatgttaggtc
tgagtaaatctttcgttactattgtataacatgtggtgttacactagtag
aggtaacacgctttccctgcattcccacaagcaagtaagagaatgaactt
agatgaccttatttgataaggcataaaa

gaattcatcacgagagcaagcgggagccgggaaggcgaggatcggagggg
tggggaccagagtggctgtagcgcgggacgaacaggtgcccggcggagcg
ctggcttgatcacttgtgcgcgcagggctcctcagtctccctttcaaagt
cccaggtccgtaagtgtctcaagaacctcttcagggcgcgccgcaagctg
gctcctgtgcgctgtgttctgcccaggcagtgctcgttcccggcgctcgc
acgactgggagctcttggaacttggcgggttgggccggaggggccgtggg
aggcgcgggccttggcggtggcccggctcctgctccaagcgaacagcggc
ccctgctggtgatagagccttgctgcgcccgctcggcttagaggggcggc
taagataggagctaacctagcagcaggctttgtgccttctgcatttccaa
gggctaggcagggttcactatgcactcctgatctgaagagcaagtaaaga
acttggagagaaaggctgaaagttgcagaggacccggatcacaccctctc
ttaagtgtgtccttcgaagccaccctatcacctctgagcagatgtaaggt
ggacaggtaccagatggcgctggtcaaggtactggcctgctgcctgtgtt
tggctgctgcctgttcttgtaagctttctggtggagtattggaagacaag
gcaggtgggaagactgggaatttcttctctccccacccccacccccgttt
ttttttttttttaagtagggggtgttgctgatgttattgttgttttaagg
aagggagaatggaggaaaccttataatcctaaaagagctacgtcccaccc
tacttggaaagctctacgtgtgtatttaagcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54091532_54092729
seq2: B6Ng01-211D10.b_46_1223 (reverse)

seq1  TTTTATGCTTTACAAAATAAGGTCACTCTTAAGTCA-TCTCTTAACCCTG  49
      |||||||| |||  ||||||||||| ||| |  ||| |||||||   || 
seq2  TTTTATGCCTTATCAAATAAGGTCA-TCTAAGTTCATTCTCTTA---CTT  46

seq1  CCTTGTGGGAAATGCAGGGAAAGCGTTGTTACTTCTACTTAGTTGTAACA  99
       |||||||| ||||||||||||||| |||||| ||||| ||| |||||||
seq2  GCTTGTGGG-AATGCAGGGAAAGCG-TGTTACCTCTAC-TAG-TGTAACA  92

seq1  CCAACATGTTATAACAAATAGTAACGAAAGAATTTAACTCAAGAACCTAA  149
      || ||||||||||   |||||||||||||||  || |||||   |||| |
seq2  CC-ACATGTTATA--CAATAGTAACGAAAGA--TTTACTCA--GACCT-A  134

seq1  ACATCATACTTATTCTTCTATTATGGACTCCCTAGAGAATTTTCAAAATA  199
      |||||||||||||   |||| |||||||| ||||||||||||||||||||
seq2  ACATCATACTTAT--CTCTA-TATGGACT-CCTAGAGAATTTTCAAAATA  180

seq1  ATTGTCTATTAACTGAATGAAAATAATGTTTCCCCATAACTCAAAAGCAT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TGTCTATTAACTGAATGAAAATAATGTTTCCCCATAACTCAAAAGCAT  229

seq1  CTATCACCAATTTGAGAAAATATTACTACTTCTTCAAAAGAAAAAGAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACCAATTTGAGAAAATATTACTACTTCTTCAAAAGAAAAAGAAAA  279

seq1  GAAAGACTGTAGTGTTGCTCTATTTCCAATGAAATCGTTATTTTTCTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTGTAGTGTTGCTCTATTTCCAATGAAATCGTTATTTTTCTTTA  329

seq1  ATCATGATAACAACATTCAAGACATAAGGGGAAAAATCCACAGAACTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATAACAACATTCAAGACATAAGGGGAAAAATCCACAGAACTAAA  379

seq1  TAACTTAGAATGCTATGCAAATAATAAAGAGGGTTTCCATGATCCTTGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGAATGCTATGCAAATAATAAAGAGGGTTTCCATGATCCTTGGC  429

seq1  TACCAAGTATGTTAAACAAATAGCCTTAACTGATTCAAACTATTTCAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGTATGTTAAACAAATAGCCTTAACTGATTCAAACTATTTCAGAA  479

seq1  GGGCTCTCCTTTGAAGTGCACCAGCAATGTCATTGGTACTTGTGTACATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCCTTTGAAGTGCACCAGCAATGTCATTGGTACTTGTGTACATT  529

seq1  TGCATCTTCTGTAATTAAACACGTGCCTTGGGGCCTGACTTGGCCAACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTCTGTAATTAAACACGTGCCTTGGGGCCTGACTTGGCCAACAT  579

seq1  ATGAAAGAGGATTTAATTGATCTCTATGAAAAAAATCAAGTGTATGAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGGATTTAATTGATCTCTATGAAAAAAATCAAGTGTATGAACA  629

seq1  AAAAAGGGAGCAGAAAAGCAGTATAATTGTCACATAGACTTGGTACATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGAGCAGAAAAGCAGTATAATTGTCACATAGACTTGGTACATGA  679

seq1  TGCGGTCCCTGTATTAACAACCAATATGGTATACCTGAAGTTATTATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTCCCTGTATTAACAACCAATATGGTATACCTGAAGTTATTATAAA  729

seq1  AGGACAGATCTTATGTTATGAGTTGTTACTATAATCAGGTCACATTTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGATCTTATGTTATGAGTTGTTACTATAATCAGGTCACATTTAAA  779

seq1  AGGAGGGAGGAAAGGCAATGTTGAAATCTAGAAGATGCAAATATAGTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGGAAAGGCAATGTTGAAATCTAGAAGATGCAAATATAGTATG  829

seq1  GAGAATGAGATAGACCAGAACAATAAGAGGAGGAGGGAAGAGGAGGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAGATAGACCAGAACAATAAGAGGAGGAGGGAAGAGGAGGAAAA  879

seq1  GAAAAATGTAATGAATATTAGCGAAACAAGTCAGTTAGAGAAAGCTGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGTAATGAATATTAGCGAAACAAGTCAGTTAGAGAAAGCTGGAA  929

seq1  TTTATATACTTTATTGTATAGAATAACTTTGGGGTTCTTATAAAAGGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACTTTATTGTATAGAATAACTTTGGGGTTCTTATAAAAGGTTC  979

seq1  AAGATAAAAGAACTTTACATTAGAACTATTAGCTCGATGGCTGAAGACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAAGAACTTTACATTAGAACTATTAGCTCGATGGCTGAAGACAA  1029

seq1  TCAATCATAACTTTTTTTTGCAATTTCCCCAATATCTATGCTACTATTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATAACTTTTTTTTGCAATTTCCCCAATATCTATGCTACTATTCT  1079

seq1  CATTCTCAGGTGGGAGAATCCTGAGCCCAACTCCGTGCATTCCTGAAATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAGGTGGGAGAATCCTGAGCCCAACTCCGTGCATTCCTGAAATA  1129

seq1  AGTTTAAAATACTTTGAGGTAGATGGTACTTTTGAGGTAAATTGAATTC  1198
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAATACTTTGAGGTAGATGGTACTTTTGAGGTAAATTGAATTC  1178


seq1: chr2_53937708_53938594
seq2: B6Ng01-211D10.g_66_948

seq1  GAATTCATCACGAGAGCAAGCGGGAGCCGGGAAGGCGAGGATCGGAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACGAGAGCAAGCGGGAGCCGGGAAGGCGAGGATCGGAGGGG  50

seq1  TGGGGACCAGAGTGGCTGTAGCGCGGGACGAACAGGTGCCCGGCGGAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCAGAGTGGCTGTAGCGCGGGACGAACAGGTGCCCGGCGGAGCG  100

seq1  CTGGCTTGATCACTTGTGCGCGCAGGGCTCCTCAGTCTCCCTTTCAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGATCACTTGTGCGCGCAGGGCTCCTCAGTCTCCCTTTCAAAGT  150

seq1  CCCAGGTCCGTAAGTGTCTCAAGAACCTCTTCAGGGCGCGCCGCAAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCCGTAAGTGTCTCAAGAACCTCTTCAGGGCGCGCCGCAAGCTG  200

seq1  GCTCCTGTGCGCTGTGTTCTGCCCAGGCAGTGCTCGTTCCCGGCGCTCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTGCGCTGTGTTCTGCCCAGGCAGTGCTCGTTCCCGGCGCTCGC  250

seq1  ACGACTGGGAGCTCTTGGAACTTGGCGGGTTGGGCCGGAGGGGCCGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTGGGAGCTCTTGGAACTTGGCGGGTTGGGCCGGAGGGGCCGTGGG  300

seq1  AGGCGCGGGCCTTGGCGGTGGCCCGGCTCCTGCTCCAAGCGAACAGCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCGGGCCTTGGCGGTGGCCCGGCTCCTGCTCCAAGCGAACAGCGGC  350

seq1  CCCTGCTGGTGATAGAGCCTTGCTGCGCCCGCTCGGCTTAGAGGGGCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGGTGATAGAGCCTTGCTGCGCCCGCTCGGCTTAGAGGGGCGGC  400

seq1  TAAGATAGGAGCTAACCTAGCAGCAGGCTTTGTGCCTTCTGCATTTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGGAGCTAACCTAGCAGCAGGCTTTGTGCCTTCTGCATTTCCAA  450

seq1  GGGCTAGGCAGGGTTCACTATGCACTCCTGATCTGAAGAGCAAGTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGCAGGGTTCACTATGCACTCCTGATCTGAAGAGCAAGTAAAGA  500

seq1  ACTTGGAGAGAAAGGCTGAAAGTTGCAGAGGACCCGGATCACACCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGAGAAAGGCTGAAAGTTGCAGAGGACCCGGATCACACCCTCTC  550

seq1  TTAAGTGTGTCCTTCGAAGCCACCCTATCACCTCTGAGCAGATGTAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTGTCCTTCGAAGCCACCCTATCACCTCTGAGCAGATGTAAGGT  600

seq1  GGACAGGTACCAGATGGCGCTGGTCAAGGTACTGGCCTGCTGCCTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTACCAGATGGCGCTGGTCAAGGTACTGGCCTGCTGCCTGTGTT  650

seq1  TGGCTGCTGCCTGTTCTTGTAAGCTTTCTGGTGGAGTATTGGAAGACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGCCTGTTCTTGTAAGCTTTCTGGTGGAGTATTGGAAGACAAG  700

seq1  GCAGGTGGGAAGACTGGGAATTTCTTCTCTCCCCACCCCCACCCCCGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGGAAGACTGGGAATTTCTTCTCTCCCCACCCCCACCCCCGTTT  750

seq1  TTTTTTTTTTTTAAGTAGGGGGTGTTGCTGATGTTATTGTTGTTTTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAAGTAGGGGGTGTTGCTGATGTTATTGTTGTTTTAAGG  800

seq1  AAGGGAGAATGGAGGAAAACCTTAGAAATCATAAAAGAGCTACGTCCGCA  850
      ||||||||||||||| ||||||||  |||| |||||||||||||||| ||
seq2  AAGGGAGAATGGAGG-AAACCTTA-TAATCCTAAAAGAGCTACGTCC-CA  847

seq1  CCCTACTTGGAAAGCTCTTACGTGTGTAGTAAAGCGG  887
      ||||||||||||||||| |||||||||| | ||||||
seq2  CCCTACTTGGAAAGCTC-TACGTGTGTATTTAAGCGG  883


| Home | SequenceCutter | Blast | Download |