BAC Information

Click to search

BAC

Clone NameB6Ng01-211J03
Chromosome2 (Build37)
Map Location 107,217,437 - 107,337,929
singlet/doubletdoublet
Overlap genenone
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211J03.bB6Ng01-211J03.g
ACCGA029603GA029604
length1,1541,137
definitionB6Ng01-211J03.b B6Ng01-211J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,217,437 - 107,218,578)(107,336,789 - 107,337,929)
sequence
gaattcagggtcattatggggaggtaatacatgaactggcattggaaagg
agagagaaaactgattgccacagatcaccctctcaagcttccagccatct
ggggaataccatatggaaaagggaggagttcagagaggactggcacttaa
atcatcatcaggagccattttagttttcactggactagatttgactgtaa
gatatgactgtagtcttcactctaggctttggggtaacactagactaagt
taaaataacaggtatactgttttctagctatataattatttccaacttaa
ttacatctctaagttgtgaattatttattcatcagtgacatgagaataat
attcacttagaggaaagtttgtgattgccaatggaggcactgtaaagtac
ccacaccctgccttgccctcatctgtggagagaatgatgctttattttca
atactcaggtctagaacaagcttgagaagaccttggtggaaatagggtca
gaaagaacttcacaggctagtgccttctgctattcagttctgtttatata
ttaaggcaattctttttcatgctagatacagacagtgtatgcattcattt
ttcagggtcttctctagtactctttttccttttcccttctgcagccatat
ctaggagcaagtcttttttccttcagattcttcgtttggcctccatgatg
ctcaatcaccttagaccgtttggctgcattactttccctagcatttgcga
attcttggcttgaaacaattgtgattattgaatgtttgtctttcatggtt
ttggaagttgtggctttgcatagtggtttacatttaattcataaagcaga
tgcaattagaatgaagcaggtgggttggggtaagcagggtgccatctgaa
tgcatactaaccctcattaatatcctgggaagaaactggaaatgggagtg
gattggaactgctcaatctgtacagtctttctctgactatgtccagtccc
cattgtcattttagtccatcagcaaggaagggagccatgccttcctatgt
gatggcctcagggcttcaaagtgcatttttcagccaagggtggaagacca
ccttataatttcctgacataaccctcccccacggtatgtcataccccccc
tccc

gaattcattaaagtagctgcttagggaaatatacatttttgttaatgcct
cctgctaataactgtccaaaggcaaataccattatataattaagaacttg
catcacagttgtctagaaatcataaattcagaatctggagctcaatgctg
tgcatgattgttttggaacctactctacttttatttcaaaatagggaact
caaatttatgtaggtgagctgcaaggaaaagcaatgagaagtcataaaag
aaaaaaagtatcaaattggcttaaggctgaatacctaatacagttatgaa
aaaacaaaatacatctcactcttctgatatagtaatataaacgtgtaact
ggaggagttttggcaagtattcctctttctcatatcttttgcctaaatat
aatttatcaacatacctggatgaaatttgagagcaacaggactgaggata
aatatgatataatgagaatatgaaaagtagaatgaaaataaatacttgag
atttctcagaaaaataaatgaagtgacaaatgaacctaactggaaaccag
aactcttggcagtaaatcacttcacttctcagccaactgggatgtggtca
gaagttaggacaaagggcaatggctaggattagtaatattacaatagaag
agatgaaaattatttttaatttttattattatttccatataaaaaatcaa
aatttaagaggtttaaagttacaataatttgtatgctcaaaaatctgtga
tctgctgctgctttagtttctgagcagcatttgaatagtctttaccattg
tgacaatgttagctaagggtgtcaagcagaggatgttggccaaactctac
accattcattcagtgaaatgagctagacttcaaagtatggtcaatataag
tctcaaaacatgttgattcctgagccatggccaatgatagaaatcactag
tatcacactgactcagatagtcataaaactaagcccaggatcatgtaata
gaacctatgcaggacatgcttatcacagacatctccagtggcactgatgt
gatactgctatgtacagaatcatatattgtttggattgcttgccatcccc
caaagtgagagagatatgttttgaatctctggatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_107217437_107218578
seq2: B6Ng01-211J03.b_46_1199

seq1  GAATTCAGGGTCATTATGGGGAGGTAATACATGAACTGGCATTGGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTCATTATGGGGAGGTAATACATGAACTGGCATTGGAAAGG  50

seq1  AGAGAGAAAACTGATTGCCACAGATCACCCTCTCAAGCTTCCAGCCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAACTGATTGCCACAGATCACCCTCTCAAGCTTCCAGCCATCT  100

seq1  GGGGAATACCATATGGAAAAGGGAGGAGTTCAGAGAGGACTGGCACTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATACCATATGGAAAAGGGAGGAGTTCAGAGAGGACTGGCACTTAA  150

seq1  ATCATCATCAGGAGCCATTTTAGTTTTCACTGGACTAGATTTGACTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATCAGGAGCCATTTTAGTTTTCACTGGACTAGATTTGACTGTAA  200

seq1  GATATGACTGTAGTCTTCACTCTAGGCTTTGGGGTAACACTAGACTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGACTGTAGTCTTCACTCTAGGCTTTGGGGTAACACTAGACTAAGT  250

seq1  TAAAATAACAGGTATACTGTTTTCTAGCTATATAATTATTTCCAACTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACAGGTATACTGTTTTCTAGCTATATAATTATTTCCAACTTAA  300

seq1  TTACATCTCTAAGTTGTGAATTATTTATTCATCAGTGACATGAGAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTCTAAGTTGTGAATTATTTATTCATCAGTGACATGAGAATAAT  350

seq1  ATTCACTTAGAGGAAAGTTTGTGATTGCCAATGGAGGCACTGTAAAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTAGAGGAAAGTTTGTGATTGCCAATGGAGGCACTGTAAAGTAC  400

seq1  CCACACCCTGCCTTGCCCTCATCTGTGGAGAGAATGATGCTTTATTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCTGCCTTGCCCTCATCTGTGGAGAGAATGATGCTTTATTTTCA  450

seq1  ATACTCAGGTCTAGAACAAGCTTGAGAAGACCTTGGTGGAAATAGGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAGGTCTAGAACAAGCTTGAGAAGACCTTGGTGGAAATAGGGTCA  500

seq1  GAAAGAACTTCACAGGCTAGTGCCTTCTGCTATTCAGTTCTGTTTATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACTTCACAGGCTAGTGCCTTCTGCTATTCAGTTCTGTTTATATA  550

seq1  TTAAGGCAATTCTTTTTCATGCTAGATACAGACAGTGTATGCATTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCAATTCTTTTTCATGCTAGATACAGACAGTGTATGCATTCATTT  600

seq1  TTCAGGGTCTTCTCTAGTACTCTTTTTCCTTTTCCCTTCTGCAGCCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTCTTCTCTAGTACTCTTTTTCCTTTTCCCTTCTGCAGCCATAT  650

seq1  CTAGGAGCAAGTCTTTTTTCCTTCAGATTCTTCGTTTGGCCTCCATGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGCAAGTCTTTTTTCCTTCAGATTCTTCGTTTGGCCTCCATGATG  700

seq1  CTCAATCACCTTAGACCGTTTGGCTGCATTACTTTCCCTAGCATTTGCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCACCTTAGACCGTTTGGCTGCATTACTTTCCCTAGCATTTGCGA  750

seq1  ATTCTTGGCTTGAAACAATTGTGATTATTGAATGTTTGTCTTTCATGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGCTTGAAACAATTGTGATTATTGAATGTTTGTCTTTCATGGTT  800

seq1  TTGGAAGTTGTGGCTTTGCATAGTGGTTTACATTTAATTCATAAAGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTTGTGGCTTTGCATAGTGGTTTACATTTAATTCATAAAGCAGA  850

seq1  TGCAATTAGAATGAAGCAGGTGGGTTGGGGTAAGCAGGGTGCCATCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAGAATGAAGCAGGTGGGTTGGGGTAAGCAGGGTGCCATCTGAA  900

seq1  TGCATACTAACCCTCATTAATATCCTGGGAAGAAACTGGAAATGGGAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTAACCCTCATTAATATCCTGGGAAGAAACTGGAAATGGGAGTG  950

seq1  GATTGGAACTGCTCAATCTGTACAGTCTTTCTCTGACTATGTCCAGTCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAACTGCTCAATCTGTACAGTCTTTCTCTGACTATGTCCAGTCCC  1000

seq1  CATTGTCATTTTAGTCCATCAGC-AGGAAGGGAGCCATG-CTTCTTATGT  1048
      ||||||||||||||||||||||| ||||||||||||||| |||| |||||
seq2  CATTGTCATTTTAGTCCATCAGCAAGGAAGGGAGCCATGCCTTCCTATGT  1050

seq1  GATGG-CTCAGGGCTTCAAAGTGCATTTTTCAGC--AAGGTGG-AGACAA  1094
      ||||| ||||||||||||||||||||||||||||  | ||||| |||| |
seq2  GATGGCCTCAGGGCTTCAAAGTGCATTTTTCAGCCAAGGGTGGAAGACCA  1100

seq1  C--TAATATTTTCTGAACTAAC---CTCCCACGTTATGTCATA-CCCCCC  1138
      |  ||  |||| ||||  ||||   | |||||| ||||||||| ||||||
seq2  CCTTATAATTTCCTGACATAACCCTCCCCCACGGTATGTCATACCCCCCC  1150

seq1  TCCC  1142
      ||||
seq2  TCCC  1154


seq1: chr2_107336789_107337929
seq2: B6Ng01-211J03.g_64_1200 (reverse)

seq1  TTGATCAAGAGAT--CAAACATA-CTCTCTCACTTTGGGGGAT-GCAGAC  46
      |||||| ||||||   ||||||| ||||||||||||||||||| |||  |
seq2  TTGATCCAGAGATTCAAAACATATCTCTCTCACTTTGGGGGATGGCAAGC  50

seq1  AATCCCAAACATATATGATTTCTGTACATAGCAGTAATCACATCAGTGCC  96
      ||||| ||  |||||||| |||||||||||||||| ||||||||||||||
seq2  AATCCAAACAATATATGA-TTCTGTACATAGCAGT-ATCACATCAGTGCC  98

seq1  ACTTGGAGATGTCTGTTGATAAGCATGTCCTTGCATAGGTTCTATTAACA  146
      || |||||||||||| |||||||||||||| ||||||||||||||| |||
seq2  AC-TGGAGATGTCTG-TGATAAGCATGTCC-TGCATAGGTTCTATT-ACA  144

seq1  TGATTCTGGGCTTAGTTTTATGACTATCTTGAGTCAGTGTGATACTAGTG  196
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGATCCTGGGCTTAGTTTTATGACTATC-TGAGTCAGTGTGATACTAGTG  193

seq1  ATTTCTATCATTGGCCCATGGCTCAGGAATCAACATGTTTTGAGACTTAT  246
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTCTATCATTGG-CCATGGCTCAGGAATCAACATGTTTTGAGACTTAT  242

seq1  ATTGACCATACTTTGAAGTCTAGCTCATTTCACTGAATGAATGGTGTAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCATACTTTGAAGTCTAGCTCATTTCACTGAATGAATGGTGTAGA  292

seq1  GTTTGGCCAACATCCTCTGCTTGACACCCTTAGCTAACATTGTCACAATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCAACATCCTCTGCTTGACACCCTTAGCTAACATTGTCACAATG  342

seq1  GTAAAGACTATTCAAATGCTGCTCAGAAACTAAAGCAGCAGCAGATCACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGACTATTCAAATGCTGCTCAGAAACTAAAGCAGCAGCAGATCACA  392

seq1  GATTTTTGAGCATACAAATTATTGTAACTTTAAACCTCTTAAATTTTGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGAGCATACAAATTATTGTAACTTTAAACCTCTTAAATTTTGAT  442

seq1  TTTTTATATGGAAATAATAATAAAAATTAAAAATAATTTTCATCTCTTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATGGAAATAATAATAAAAATTAAAAATAATTTTCATCTCTTCT  492

seq1  ATTGTAATATTACTAATCCTAGCCATTGCCCTTTGTCCTAACTTCTGACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATATTACTAATCCTAGCCATTGCCCTTTGTCCTAACTTCTGACC  542

seq1  ACATCCCAGTTGGCTGAGAAGTGAAGTGATTTACTGCCAAGAGTTCTGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCAGTTGGCTGAGAAGTGAAGTGATTTACTGCCAAGAGTTCTGGT  592

seq1  TTCCAGTTAGGTTCATTTGTCACTTCATTTATTTTTCTGAGAAATCTCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTAGGTTCATTTGTCACTTCATTTATTTTTCTGAGAAATCTCAA  642

seq1  GTATTTATTTTCATTCTACTTTTCATATTCTCATTATATCATATTTATCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTTCATTCTACTTTTCATATTCTCATTATATCATATTTATCC  692

seq1  TCAGTCCTGTTGCTCTCAAATTTCATCCAGGTATGTTGATAAATTATATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTGTTGCTCTCAAATTTCATCCAGGTATGTTGATAAATTATATT  742

seq1  TAGGCAAAAGATATGAGAAAGAGGAATACTTGCCAAAACTCCTCCAGTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAAGATATGAGAAAGAGGAATACTTGCCAAAACTCCTCCAGTTA  792

seq1  CACGTTTATATTACTATATCAGAAGAGTGAGATGTATTTTGTTTTTTCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTATATTACTATATCAGAAGAGTGAGATGTATTTTGTTTTTTCAT  842

seq1  AACTGTATTAGGTATTCAGCCTTAAGCCAATTTGATACTTTTTTTCTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATTAGGTATTCAGCCTTAAGCCAATTTGATACTTTTTTTCTTTT  892

seq1  ATGACTTCTCATTGCTTTTCCTTGCAGCTCACCTACATAAATTTGAGTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCTCATTGCTTTTCCTTGCAGCTCACCTACATAAATTTGAGTTC  942

seq1  CCTATTTTGAAATAAAAGTAGAGTAGGTTCCAAAACAATCATGCACAGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTGAAATAAAAGTAGAGTAGGTTCCAAAACAATCATGCACAGCA  992

seq1  TTGAGCTCCAGATTCTGAATTTATGATTTCTAGACAACTGTGATGCAAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCCAGATTCTGAATTTATGATTTCTAGACAACTGTGATGCAAGT  1042

seq1  TCTTAATTATATAATGGTATTTGCCTTTGGACAGTTATTAGCAGGAGGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTATATAATGGTATTTGCCTTTGGACAGTTATTAGCAGGAGGCA  1092

seq1  TTAACAAAAATGTATATTTCCCTAAGCAGCTACTTTAATGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAATGTATATTTCCCTAAGCAGCTACTTTAATGAATTC  1137


| Home | SequenceCutter | Blast | Download |