BAC Information

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BAC

Clone NameB6Ng01-212A04
Chromosome2 (Build37)
Map Location 20,754,958 - 20,878,559
singlet/doubletdoublet
Overlap geneArhgap21
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609, Etl4
Downstream geneLOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212A04.bB6Ng01-212A04.g
ACCGA029917GA029918
length1,1481,006
definitionB6Ng01-212A04.b B6Ng01-212A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,877,385 - 20,878,559)(20,754,958 - 20,755,661)
sequence
gaattctgcgtcaggagagccaggcggtggtgcacagcatgtctctagct
ttagctgccttggaagctgagggttcaaggcagcaaaacaaaacacactt
taacatccagcacctgtgagtgatagtctatttttgaaaagtatctgctg
tccctaaccaaaagttaaacattttaaagtggtagaaattctgctttttg
gctcactgcagctacagctgttactttcagttttatttaaaaagtaattt
attgaggttcatttgtagaaggctgtatttgaagaaactcttgctagaat
aatttgtaatcatttgcttttactgttttttttttttagcaagaatagaa
aaagttgcagtgaaagaatatatatgcacatacaacatgcacacacatca
tgcatgcacatacatcatacacacacacacagacacacacacatacccac
acctctgtatgtgagtgcacattgtgagtgacagaaatcattgcaacata
aatcttaaataatgaagtgttcattagtgagataatttcccctataaatc
tgtccccatttactgccaacagctcttctgattctgtcttttgaatcagg
ctggcctttcagtctgactcatagtggacggcatatgataatataatgca
cacacaacgcaaactaattgcagtgtccagttgcaatcctgaaaaagaag
tgtggtttctgaaaacagtgactgtgaaggagtaggcacccagcaactga
caaggaggatctggcagagacagaccagttcacaatgaagaaaatgtaat
cagggttgataggcatctcaaaggagagccgtggagagcatgtttaagga
ttaagagcttttgagaaattgatgtctttgcccgtgattgcatctaggag
gatgcgggttcttctcggaagcaaagtttagcttagactcagtctttcag
cagctctgtttgccagagacagtaaaaatcaggatgaatatattgatgga
tggatggagtagtgaacaaatgctctgctgctgagataatagaaaaccta
gctttctgctacttcaatgagctgtttaaaagagactcggatagtttcta
caagttaagtcctagttcccacatagtcagagtggaacttagctgcac

gaattcacacaaaaataaaactgtttcatttacagaaggcagtaaaatat
gataagtggtattttaaagttgatgaggtaattttgaaagagtggtgtta
tttttagtgagggacaaaacaagtggaatttgaaacttgctgaagagatt
ctgctgcagattagacagagctaaagataaagcagcaaagtagaaagcag
ctgtgggtcttgtatccctggtcccaaagagaccagtctgtgcaggagag
tgggcaggcaacagaatcaacagagcttctgggacagggtctctttctgg
ccttcatcttcagccaggaggcagagctgagctctagaccactgcgcact
tgtctgctgagagtactatgaccactgagactcaggagagagctggactc
ccaggacagctgacagaggctaacagaaccacaggaggaacaagctccag
ccagaggcagctataacaactaacaccagagatttaccaaatggcgaaag
gcaaatataacaatcttactaacagaaaccaagaccactcagcatcatca
gaacccagccctcccatcacagcgaatcctggataccccaacacacccga
aaagcaagattcggatttaaaatcatatctcaggatgctagaggaggatt
ttaagaaggacattaataattcaaagaaatacaggacaacacagctaaac
aggtagaaggccttaaagaggaagcacaaaaatccgttaaagaattacag
gaaaacacaaccaaacagaggtgatggaattgaacaaaaccatctaggat
ctaaaactggaagtagaaacaataaagaaaacccaagggagacaactctg
gagatagaaaccctaggaaagaaattgggcacaatagatgtgagcatcag
caacagaatacagagatggaaaagagaatctcaggtgcagaagattccat
aggagcatggacacacagtcaaagaaaatgcaaatgcaaaaagatcctaa
ctcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20877385_20878559
seq2: B6Ng01-212A04.b_44_1191 (reverse)

seq1  GTGCAGCTAAAATACTCACACTTCTGAACTATGTGGGAACCTAAGAACTA  50
      ||||||||||  | | |     |||| |||||||||||||   || ||| 
seq2  GTGCAGCTAAGTTCCAC-----TCTG-ACTATGTGGGAAC--TAGGACT-  41

seq1  TAACCTTTGTAGAAACTATCCCGAGGTCTCTTTTTAAACAGCTTCATTTG  100
      ||||  ||||||||||||| |||| ||||| ||||||||||| |||||  
seq2  TAAC--TTGTAGAAACTAT-CCGA-GTCTC-TTTTAAACAGC-TCATT--  83

seq1  AAAGTTAACCAGGAAAGCTAGGGTTTTCTATTAATTCTCAGCAGCAAGAG  150
       ||||  | || |||||||| ||||||||||||  |||||||||| ||||
seq2  GAAGT--AGCA-GAAAGCTA-GGTTTTCTATTA--TCTCAGCAGC-AGAG  126

seq1  CAATTTGTTCACTACTTCCATCCATCCATCAATATATTCATCCCTGATTT  200
      | ||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  C-ATTTGTTCACTAC-TCCATCCATCCATCAATATATTCAT-CCTGATTT  173

seq1  TTACTGTCTCTTGGCAAACAGAGCTGCTGAAAGACTGAGTCTAAGCTAAA  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCTC-TGGCAAACAGAGCTGCTGAAAGACTGAGTCTAAGCTAAA  222

seq1  CTTTGCTTCCGAGAAGAA-CCGCATCCTCCTAGATGCAATCACGGGCAAA  299
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTTGCTTCCGAGAAGAACCCGCATCCTCCTAGATGCAATCACGGGCAAA  272

seq1  GACATCAATTTCTCAAAAGCTCTTAATCCTTAAACATGCTCTCCACGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAATTTCTCAAAAGCTCTTAATCCTTAAACATGCTCTCCACGGCT  322

seq1  CTCCTTTGAGATGCCTATCAACCCTGATTACATTTTCTTCATTGTGAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGAGATGCCTATCAACCCTGATTACATTTTCTTCATTGTGAACT  372

seq1  GGTCTGTCTCTGCCAGATCCTCCTTGTCAGTTGCTGGGTGCCTACTCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCTCTGCCAGATCCTCCTTGTCAGTTGCTGGGTGCCTACTCCTT  422

seq1  CACAGTCACTGTTTTCAGAAACCACACTTCTTTTTCAGGATTGCAACTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCACTGTTTTCAGAAACCACACTTCTTTTTCAGGATTGCAACTGG  472

seq1  ACACTGCAATTAGTTTGCGTTGTGTGTGCATTATATTATCATATGCCGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAATTAGTTTGCGTTGTGTGTGCATTATATTATCATATGCCGTC  522

seq1  CACTATGAGTCAGACTGAAAGGCCAGCCTGATTCAAAAGACAGAATCAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGAGTCAGACTGAAAGGCCAGCCTGATTCAAAAGACAGAATCAGA  572

seq1  AGAGCTGTTGGCAGTAAATGGGGACAGATTTATAGGGGAAATTATCTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTTGGCAGTAAATGGGGACAGATTTATAGGGGAAATTATCTCAC  622

seq1  TAATGAACACTTCATTATTTAAGATTTATGTTGCAATGATTTCTGTCACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACACTTCATTATTTAAGATTTATGTTGCAATGATTTCTGTCACT  672

seq1  CACAATGTGCACTCACATACAGAGGTGTGGGTATGTGTGTGTGTCTGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTGCACTCACATACAGAGGTGTGGGTATGTGTGTGTGTCTGTGT  722

seq1  GTGTGTGTATGATGTATGTGCATGCATGATGTGTGTGCATGTTGTATGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGATGTATGTGCATGCATGATGTGTGTGCATGTTGTATGTG  772

seq1  CATATATATTCTTTCACTGCAACTTTTTCTATTCTTGCTAAAAAAAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATTCTTTCACTGCAACTTTTTCTATTCTTGCTAAAAAAAAAAA  822

seq1  ACAGTAAAAGCAAATGATTACAAATTATTCTAGCAAGAGTTTCTTCAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAAGCAAATGATTACAAATTATTCTAGCAAGAGTTTCTTCAAAT  872

seq1  ACAGCCTTCTACAAATGAACCTCAATAAATTACTTTTTAAATAAAACTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTCTACAAATGAACCTCAATAAATTACTTTTTAAATAAAACTGA  922

seq1  AAGTAACAGCTGTAGCTGCAGTGAGCCAAAAAGCAGAATTTCTACCACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACAGCTGTAGCTGCAGTGAGCCAAAAAGCAGAATTTCTACCACTT  972

seq1  TAAAATGTTTAACTTTTGGTTAGGGACAGCAGATACTTTTCAAAAATAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTTAACTTTTGGTTAGGGACAGCAGATACTTTTCAAAAATAGA  1022

seq1  CTATCACTCACAGGTGCTGGATGTTAAAGTGTGTTTTGTTTTGCTGCCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACTCACAGGTGCTGGATGTTAAAGTGTGTTTTGTTTTGCTGCCTT  1072

seq1  GAACCCTCAGCTTCCAAGGCAGCTAAAGCTAGAGACATGCTGTGCACCAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTCAGCTTCCAAGGCAGCTAAAGCTAGAGACATGCTGTGCACCAC  1122

seq1  CGCCTGGCTCTCCTGACGCAGAATTC  1175
      ||||||||||||||||||||||||||
seq2  CGCCTGGCTCTCCTGACGCAGAATTC  1148


seq1: chr2_20754958_20755661
seq2: B6Ng01-212A04.g_63_766

seq1  GAATTCACACAAAAATAAAACTGTTTCATTTACAGAAGGCAGTAAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAAAAATAAAACTGTTTCATTTACAGAAGGCAGTAAAATAT  50

seq1  GATAAGTGGTATTTTAAAGTTGATGAGGTAATTTTGAAAGAGTGGTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTGGTATTTTAAAGTTGATGAGGTAATTTTGAAAGAGTGGTGTTA  100

seq1  TTTTTAGTGAGGGACAAAACAAGTGGAATTTGAAACTTGCTGAAGAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTGAGGGACAAAACAAGTGGAATTTGAAACTTGCTGAAGAGATT  150

seq1  CTGCTGCAGATTAGACAGAGCTAAAGATAAAGCAGCAAAGTAGAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCAGATTAGACAGAGCTAAAGATAAAGCAGCAAAGTAGAAAGCAG  200

seq1  CTGTGGGTCTTGTATCCCTGGTCCCAAAGAGACCAGTCTGTGCAGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTCTTGTATCCCTGGTCCCAAAGAGACCAGTCTGTGCAGGAGAG  250

seq1  TGGGCAGGCAACAGAATCAACAGAGCTTCTGGGACAGGGTCTCTTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGCAACAGAATCAACAGAGCTTCTGGGACAGGGTCTCTTTCTGG  300

seq1  CCTTCATCTTCAGCCAGGAGGCAGAGCTGAGCTCTAGACCACTGCGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCTTCAGCCAGGAGGCAGAGCTGAGCTCTAGACCACTGCGCACT  350

seq1  TGTCTGCTGAGAGTACTATGACCACTGAGACTCAGGAGAGAGCTGGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGAGAGTACTATGACCACTGAGACTCAGGAGAGAGCTGGACTC  400

seq1  CCAGGACAGCTGACAGAGGCTAACAGAACCACAGGAGGAACAAGCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCTGACAGAGGCTAACAGAACCACAGGAGGAACAAGCTCCAG  450

seq1  CCAGAGGCAGCTATAACAACTAACACCAGAGATTTACCAAATGGCGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCAGCTATAACAACTAACACCAGAGATTTACCAAATGGCGAAAG  500

seq1  GCAAATATAACAATCTTACTAACAGAAACCAAGACCACTCAGCATCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATAACAATCTTACTAACAGAAACCAAGACCACTCAGCATCATCA  550

seq1  GAACCCAGCCCTCCCATCACAGCGAATCCTGGATACCCCAACACACCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGCCCTCCCATCACAGCGAATCCTGGATACCCCAACACACCCGA  600

seq1  AAAGCAAGATTCGGATTTAAAATCATATCTCAGGATGCTAGAGGAGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGATTCGGATTTAAAATCATATCTCAGGATGCTAGAGGAGGATT  650

seq1  TTAAGAAGGACATTAATAATTCAAAGAAATACAGGACAACACAGCTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGGACATTAATAATTCAAAGAAATACAGGACAACACAGCTAAAC  700

seq1  AGGT  704
      ||||
seq2  AGGT  704


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