BAC Information

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BAC

Clone NameB6Ng01-212F06
Chromosome2 (Build37)
Map Location 120,096,711 - 120,205,784
singlet/doubletdoublet
Overlap genePla2g4d, Pla2g4f, Vps39, Tmem87a
Upstream geneRhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635
Downstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212F06.bB6Ng01-212F06.g
ACCGA030153GA030154
length904855
definitionB6Ng01-212F06.b B6Ng01-212F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,096,711 - 120,097,583)(120,204,929 - 120,205,784)
sequence
gaattctctggggtgtggaggagttggagtttgttagaaaaatgggatgg
gcaggactttacccttgaagtggagggtttccagatggttctctttgaca
ttgaggctcaagtagagaggcaaagggttctgacccctctccagtgcagc
tctctgtcctgacagcttctgatctgtcacctagggtcagaagcatgaag
acatgtctcggaagcagtaactccaacaggttcacggcagggtagggtag
gaacatcagagttcagtgaggaggctatagccctgctgaggtctggaggc
tatgagtggctgtgtgcagccagctctgagcagctccatatatagtctac
catatctcctcccattctgtcttcacagacatcacacagacacatacaca
gacacagagacacatgcacagacacacacacacacagacacatgcacaga
tacacagtcgcacacagagacacacacacagacacacacagagagacaca
tgcacagacacacacacacagacacacacagagagactcatgcacagaca
cacacatgcacagataaacatagacacagagacacatgcacagacacaca
gtcacacacagagacacacaaagagacacatgcacagacacacacacaca
cagagacacatgcacagatagatacacagtcacacacagagacacagagt
catacacagagacacacacagacacatgcacagacacacacatacacata
catacatacacactttcatacaaagacagatacacatcatatataccaca
caaacacacagagacacagacacatgcacacacactcacacacacagaga
tagacttgtcacactcacacacacactacacacactcattacacacacac
acgc
gaattctgagctaaaaaggcccaatcagtgcaaggagcaggcacttttga
ggacagttatttctgtagtctgcctctagtctacatcattctagatctag
actagatcattctttcttatttattagtattacatgctagagatacagtt
atttttcgaagagaaggtagagactgtttgaggtttttatatttattgta
tgctgattttaaatctgaataatttgttcttggctctaattctgcttttt
atttcattcccaattggataacagtttttcatggtgatgtgtattgtgta
cgtactatttggtgttctctggctggcatggtctgcttgctactggagag
atctcctgagaattcaattttggattggtgctgtcatctttcttggaatg
tttgagaaagctgtgttttatgcagaatttcagaatatccgatacaaagg
agaatctggtatgttttaaaaggtgccattttaaattttttgtttatttt
atgtacatgtgtgggtccctgtgcatggcatgcctgtggaggtcagagac
caacatgtgggaatcaggtctctcctttcaccatgtgtgccctggggatt
gagctcaggtagtcaggtttgacattagggacctttatctactgaaccat
cttaccagacccaaaattcccccctcctttaagttttatatttttaaatg
atctatatgtgggtggatggatggtatgttacatgcacataagtgcaggt
gccctgtggagccagagggatcagatcccccgggaaccagagcggcagtt
tgggtcacctatgggtaggtgttggacaccaaactcaagtcttttgcaga
gcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120096711_120097583
seq2: B6Ng01-212F06.b_49_930

seq1  GAATTCTCTGGGGTGTGGAGGAGTTGGAGTTTGTTAG-AGGATGGGATGG  49
      ||||||||||||||||||||||||||||||||||||| |  |||||||||
seq2  GAATTCTCTGGGGTGTGGAGGAGTTGGAGTTTGTTAGAAAAATGGGATGG  50

seq1  GCAGGACTTTACCCTTGAAGTGGAGGGTTTCCAGATGGTTCTCTTTGACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTTTACCCTTGAAGTGGAGGGTTTCCAGATGGTTCTCTTTGACA  100

seq1  TTGAGGCTCAAGTAGAGAGGCAAAGGGTTCTGACCCCTCTCCAGTGCAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTCAAGTAGAGAGGCAAAGGGTTCTGACCCCTCTCCAGTGCAGC  150

seq1  TCTCTGTCCTGACAGCTTCTGATCTGTCACCTAGGGTCAGAAGCATGAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCCTGACAGCTTCTGATCTGTCACCTAGGGTCAGAAGCATGAAG  200

seq1  ACATGTCTCGGAAGCAGTAACTCCAACAGGTTCACGGCAGGGTAGGGTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTCGGAAGCAGTAACTCCAACAGGTTCACGGCAGGGTAGGGTAG  250

seq1  GAACATCAGAGTTCAGTGAGGAGGCTATAGCCCTGCTGAGGTCTGGAGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCAGAGTTCAGTGAGGAGGCTATAGCCCTGCTGAGGTCTGGAGGC  300

seq1  TATGAGTGGCTGTGTGCAGCCAGCTCTGAGCAGCTCCATATATAGTCTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGGCTGTGTGCAGCCAGCTCTGAGCAGCTCCATATATAGTCTAC  350

seq1  CATATCTCCTCCCATTCTGTCTTCACAGACATCACACAGACACATACACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCCTCCCATTCTGTCTTCACAGACATCACACAGACACATACACA  400

seq1  GACACAGAGACACATGCACAGACACACACACACACAGACACATGCACAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGACACATGCACAGACACACACACACACAGACACATGCACAGA  450

seq1  TACACAGTCGCACACAGAGACACACACACAGACACACACAGAGAGACACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTCGCACACAGAGACACACACACAGACACACACAGAGAGACACA  500

seq1  TGCACAGACACACACACACAGACACACACAGAGAGACTCATGCACAGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGACACACACACACAGACACACACAGAGAGACTCATGCACAGACA  550

seq1  CACACATGCACAGATAAACATAGACACAGAGACACATGCACAGACACACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCACAGATAAACATAGACACAGAGACACATGCACAGACACACA  600

seq1  GTCACACACAGAGACACACAAAGAGACACATGCACAGACACACACACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACACAGAGACACACAAAGAGACACATGCACAGACACACACACACA  650

seq1  CAGAGACACATGCACAGATAGATACACAGTCACACACAGAGACACAGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACATGCACAGATAGATACACAGTCACACACAGAGACACAGAGT  700

seq1  CATACACAGAGACACACACAGACACATGCACAGACACACACATACACATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGAGACACACACAGACACATGCACAGACACACACATACACATA  750

seq1  CATACATACACACATTCATACAAAGACAGATACACATCACATATACCACA  799
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CATACATACACACTTTCATACAAAGACAGATACACATCATATATACCACA  800

seq1  CAAACACACAGAGACACAGACACATGCACACACACACACACACACAGAGA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAACACACAGAGACACAGACACATGCACACACACTCACACACACAGAGA  850

seq1  TAGAC-TGTCACACACACACACACA-------  873
      ||||| |||||||| ||||||||||       
seq2  TAGACTTGTCACACTCACACACACACTACACA  882

seq1: chr2_120204929_120205784
seq2: B6Ng01-212F06.g_69_923 (reverse)

seq1  AGTGCTCTTGCAAAGGACTTGAGTTTGGTGTCCAACACCTACACCTAGGT  50
      ||||||| |||||| ||||||||||||||||||||||||||| | |||||
seq2  AGTGCTC-TGCAAAAGACTTGAGTTTGGTGTCCAACACCTACCCATAGGT  49

seq1  GACCCAAAACTGCCGCTCTGGTTCCCTGGGGATCTGATCCCTCTGGCTCC  100
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  GACCC-AAACTGCCGCTCTGGTTCCCGGGGGATCTGATCCCTCTGGCTCC  98

seq1  ACA-GGCACCTGCACTTATGTGCATGTAACATACCATCCATCCACCCACA  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCACCTGCACTTATGTGCATGTAACATACCATCCATCCACCCACA  148

seq1  TATAGATCATTTAAAAATATAAAACTTAAAGGAGGGGGGAATTTTGGGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATCATTTAAAAATATAAAACTTAAAGGAGGGGGGAATTTTGGGTC  198

seq1  TGGTAAGATGGTTCAGTAGATAAAGGTCCCTAATGTCAAACCTGACTACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGATGGTTCAGTAGATAAAGGTCCCTAATGTCAAACCTGACTACC  248

seq1  TGAGCTCAATCCCCAGGGCACACATGGTGAAAGGAGAGACCTGATTCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCAATCCCCAGGGCACACATGGTGAAAGGAGAGACCTGATTCCCA  298

seq1  CATGTTGGTCTCTGACCTCCACAGGCATGCCATGCACAGGGACCCACACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGGTCTCTGACCTCCACAGGCATGCCATGCACAGGGACCCACACA  348

seq1  TGTACATAAAATAAACAAAAAATTTAAAATGGCACCTTTTAAAACATACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAAAATAAACAAAAAATTTAAAATGGCACCTTTTAAAACATACC  398

seq1  AGATTCTCCTTTGTATCGGATATTCTGAAATTCTGCATAAAACACAGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCCTTTGTATCGGATATTCTGAAATTCTGCATAAAACACAGCTT  448

seq1  TCTCAAACATTCCAAGAAAGATGACAGCACCAATCCAAAATTGAATTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACATTCCAAGAAAGATGACAGCACCAATCCAAAATTGAATTCTC  498

seq1  AGGAGATCTCTCCAGTAGCAAGCAGACCATGCCAGCCAGAGAACACCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATCTCTCCAGTAGCAAGCAGACCATGCCAGCCAGAGAACACCAAA  548

seq1  TAGTACGTACACAATACACATCACCATGAAAAACTGTTATCCAATTGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACGTACACAATACACATCACCATGAAAAACTGTTATCCAATTGGGA  598

seq1  ATGAAATAAAAAGCAGAATTAGAGCCAAGAACAAATTATTCAGATTTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAAAAGCAGAATTAGAGCCAAGAACAAATTATTCAGATTTAAA  648

seq1  ATCAGCATACAATAAATATAAAAACCTCAAACAGTCTCTACCTTCTCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATACAATAAATATAAAAACCTCAAACAGTCTCTACCTTCTCTTC  698

seq1  GAAAAATAACTGTATCTCTAGCATGTAATACTAATAAATAAGAAAGAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAACTGTATCTCTAGCATGTAATACTAATAAATAAGAAAGAATG  748

seq1  ATCTAGTCTAGATCTAGAATGATGTAGACTAGAGGCAGACTACAGAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCTAGATCTAGAATGATGTAGACTAGAGGCAGACTACAGAAATA  798

seq1  ACTGTCCTCAAAAGTGCCTGCTCCTTGCACTGATTGGGCCTTTTTAGCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTCAAAAGTGCCTGCTCCTTGCACTGATTGGGCCTTTTTAGCTC  848

seq1  AGAATTC  856
      |||||||
seq2  AGAATTC  855