BAC Information

Click to search

BAC

Clone NameB6Ng01-212G18
Chromosome2 (Build37)
Map Location 173,203,399 - 173,366,384
singlet/doubletdoublet
Overlap gene1700021F07Rik
Upstream geneCstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai
Downstream gene1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212G18.bB6Ng01-212G18.g
ACCGA030222GA030223
length1,011724
definitionB6Ng01-212G18.b B6Ng01-212G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,365,382 - 173,366,384)(173,203,399 - 173,204,122)
sequence
gaattctttccagaacaccaaaaagtcagtcctcttcaagtgtgctgctg
tttaaggggatatctttatttgggatgtttacaaccatattcctatgaat
gaaatttcccagggatggttagctttgtccatgtgacacaagctagggcc
atgtgagatgaaggaacctcgactgagaaaatgcctccataatctgcctg
gaggcaagcctgtgggcattttcttgattgattaattaatgactgatgca
gaaggcccagttccctgtgggggtgtcttccctgggtaggtggtcctagg
atgtataaaaaagcaggcagtgtaaggcacgaggagcaagcacccctctg
tggcctctgctttgagtgtctggccccaggtccctgccccaggttcttct
cttgctttccctgatggactgtaacctgtgagccaaataatcctttcctc
ccaagttgcttttggtcatagtgttttatcacagcaagaaatcaagctaa
tattacccatgaagaaggggtatgtgcttgtggaccccagaaggttcact
tcaagcctagtgcggagagacgtcctgtgcagggaggtctggaccacaga
ctcaccttgtggacatctcacaacctgagtctgggcctgagctcccaatt
caaacatctagcaggaaaccaaacacagccagtagacgcacacatttaat
atttctccgaaaaacccctgaacccgagagaacagcccagcccactgtcc
caaatgtgcagcctggcgaatttttgtaagcgacacacagctgggtcccc
agggtcttgattaagaatagaatgtgacctgaagtgccctctctctgaac
cctcccggctgccaccctgcagagaccccagcctgactccggcaggtcga
tgctgtctccgcacttgatattaaatggaaagcagacaggttcgttcttt
tccgtgttctggcgtcttctggcccaatgtttctgtggatttatttttta
tctttccagtc
gaattcatctctttggggctgcagtggaattgatgggtgggtggagttag
aaagttccatcagtttgctgattagattgttgtctgaaggccagggccgg
gttcgtgccttgttctgagttagtggatctgggatcaccctaaccgctgg
attaggcaattctggctgaagaaaaggaaatgactttcagaacagggctg
tctcttctggggccaggctgtcctccctcaaattggttgtggcggcagtg
tgggaatgagggaaggcaggactgcctgcctctgcatgtgaactggaagc
caggctgctgctgtccttaaccagggctgctgaatgggcctgtgtttggg
tacgaaagcctggcatagcttgttagccccagcagggcgtgagccgcaga
aagccaaacaagtaaccctgctggacagcactttcctcaagaaacccacc
ataaaaccttcctgaggtggaagacagcttcgcacggcttccacaacccc
agcttgatacagaggcgggtgttagttattctcactagctgggacattat
gaatctgagtgtgccagcaagcaggcactccacacaggtaccctcctcca
ggaaggaacaatttaaccctttccccaaaagccccaagaagcctgttgtt
actggaggtggtagggtctgagcttgtggccacaacgctgccctctttca
ctttgtatggggggcggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173365382_173366384
seq2: B6Ng01-212G18.b_44_1054 (reverse)

seq1  GACTG--AAGAT-AAAAATAAATCCACAG-AACATGGGGCCAG-AGACGC  45
      |||||  ||||| |||||||||||||||| ||||| ||||||| ||||||
seq2  GACTGGAAAGATAAAAAATAAATCCACAGAAACATTGGGCCAGAAGACGC  50

seq1  CAG-ACACGGAAAAGAACGAA-CTGTCTGC-TTCCATTT-ATATCAAGTG  91
      ||| ||||||||||||||||| |||||||| |||||||| ||||||||||
seq2  CAGAACACGGAAAAGAACGAACCTGTCTGCTTTCCATTTAATATCAAGTG  100

seq1  CGGAGACAGCATCGACCTGCCGGAGTCAGGCTGGGGTCTCTGCAGGGTGG  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGACAGCATCGACCTGCCGGAGTCAGGCTGGGGTCTCTGCAGGGTGG  150

seq1  CAGCCGGGAGGGGTTCAGAGAGAGGGCACTTCAGGTCACATTCTATTCTT  191
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGGA-GGGTTCAGAGAGAGGGCACTTCAGGTCACATTCTATTCTT  199

seq1  AATCAAGACCCTGGGGACCCAGCTGTGTGTCGCTTACAAAAATTCGCCAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGACCCTGGGGACCCAGCTGTGTGTCGCTTACAAAAATTCGCCAG  249

seq1  GCTGCACATTTGGGACAGTGGGCTGGGCTGTTCTCTCGGGTTCAGGGGTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACATTTGGGACAGTGGGCTGGGCTGTTCTCTCGGGTTCAGGGGTT  299

seq1  TTTCGGAGAAATATTAAATGTGTGCGTCTACTGGCTGTGTTTGGTTTCCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGAGAAATATTAAATGTGTGCGTCTACTGGCTGTGTTTGGTTTCCT  349

seq1  GCTAGATGTTTGAATTGGGAGCTCAGGCCCAGACTCAGGTTGTGAGATGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATGTTTGAATTGGGAGCTCAGGCCCAGACTCAGGTTGTGAGATGT  399

seq1  CCACAAGGTGAGTCTGTGGTCCAGACCTCCCTGCACAGGACGTCTCTCCG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGTGAGTCTGTGGTCCAGACCTCCCTGCACAGGACGTCTCTCCG  449

seq1  CACTAGGCTTGAAGTGAACCTTCTGGGGTCCACAAGCACATACCCCTTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGCTTGAAGTGAACCTTCTGGGGTCCACAAGCACATACCCCTTCT  499

seq1  TCATGGGTAATATTAGCTTGATTTCTTGCTGTGATAAAACACTATGACCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTAATATTAGCTTGATTTCTTGCTGTGATAAAACACTATGACCA  549

seq1  AAAGCAACTTGGGAGGAAAGGATTATTTGGCTCACAGGTTACAGTCCATC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACTTGGGAGGAAAGGATTATTTGGCTCACAGGTTACAGTCCATC  599

seq1  AGGGAAAGCAAGAGAAGAACCTGGGGCAGGGACCTGGGGCCAGACACTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGCAAGAGAAGAACCTGGGGCAGGGACCTGGGGCCAGACACTCA  649

seq1  AAGCAGAGGCCACAGAGGGGTGCTTGCTCCTCGTGCCTTACACTGCCTGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGGCCACAGAGGGGTGCTTGCTCCTCGTGCCTTACACTGCCTGC  699

seq1  TTTTTTATACATCCTAGGACCACCTACCCAGGGAAGACACCCCCACAGGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATACATCCTAGGACCACCTACCCAGGGAAGACACCCCCACAGGG  749

seq1  AACTGGGCCTTCTGCATCAGTCATTAATTAATCAATCAAGAAAATGCCCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGCCTTCTGCATCAGTCATTAATTAATCAATCAAGAAAATGCCCA  799

seq1  CAGGCTTGCCTCCAGGCAGATTATGGAGGCATTTTCTCAGTCGAGGTTCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGCCTCCAGGCAGATTATGGAGGCATTTTCTCAGTCGAGGTTCC  849

seq1  TTCATCTCACATGGCCCTAGCTTGTGTCACATGGACAAAGCTAACCATCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCACATGGCCCTAGCTTGTGTCACATGGACAAAGCTAACCATCC  899

seq1  CTGGGAAATTTCATTCATAGGAATATGGTTGTAAACATCCCAAATAAAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAATTTCATTCATAGGAATATGGTTGTAAACATCCCAAATAAAGA  949

seq1  TATCCCCTTAAACAGCAGCACACTTGAAGAGGACTGACTTTTTGGTGTTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCTTAAACAGCAGCACACTTGAAGAGGACTGACTTTTTGGTGTTC  999

seq1  TGGAAAGAATTC  1003
      ||||||||||||
seq2  TGGAAAGAATTC  1011

seq1: chr2_173203399_173204122
seq2: B6Ng01-212G18.g_67_790

seq1  GAATTCATCTCTTTGGGGCTGCAGTGGAATTGATGGGTGGGTGGAGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTTTGGGGCTGCAGTGGAATTGATGGGTGGGTGGAGTTAG  50

seq1  AAAGTTCCATCAGTTTGCTGATTAGATTGTTGTCTGAAGGCCAGGGCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCATCAGTTTGCTGATTAGATTGTTGTCTGAAGGCCAGGGCCGG  100

seq1  GTTCGTGCCTTGTTCTGAGTTAGTGGATCTGGGATCACCCTAACCGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTGCCTTGTTCTGAGTTAGTGGATCTGGGATCACCCTAACCGCTGG  150

seq1  ATTAGGCAATTCTGGCTGAAGAAAAGGAAATGACTTTCAGAACAGGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCAATTCTGGCTGAAGAAAAGGAAATGACTTTCAGAACAGGGCTG  200

seq1  TCTCTTCTGGGGCCAGGCTGTCCTCCCTCAAATTGGTTGTGGCGGCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGGGGCCAGGCTGTCCTCCCTCAAATTGGTTGTGGCGGCAGTG  250

seq1  TGGGAATGAGGGAAGGCAGGACTGCCTGCCTCTGCATGTGAACTGGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGAGGGAAGGCAGGACTGCCTGCCTCTGCATGTGAACTGGAAGC  300

seq1  CAGGCTGCTGCTGTCCTTAACCAGGGCTGCTGAATGGGCCTGTGTTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCTGCTGTCCTTAACCAGGGCTGCTGAATGGGCCTGTGTTTGGG  350

seq1  TACGAAAGCCTGGCATAGCTTGTTAGCCCCAGCAGGGCGTGAGCCGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAAGCCTGGCATAGCTTGTTAGCCCCAGCAGGGCGTGAGCCGCAGA  400

seq1  AAGCCAAACAAGTAACCCTGCTGGACAGCACTTTCCTCAAGAAACCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAACAAGTAACCCTGCTGGACAGCACTTTCCTCAAGAAACCCACC  450

seq1  ATAAAACCTTCCTGAGGTGGAAGACAGCTTCGCACGGCTTCCACAACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTTCCTGAGGTGGAAGACAGCTTCGCACGGCTTCCACAACCCC  500

seq1  AGCTTGATACAGAGGCGGGTGTTAGTTATTCTCACTAGCTGGGACATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATACAGAGGCGGGTGTTAGTTATTCTCACTAGCTGGGACATTAT  550

seq1  GAATCTGAGTGTGCCAGCAAGCAGGCACTCCACACAGGTACCCTCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGAGTGTGCCAGCAAGCAGGCACTCCACACAGGTACCCTCCTCCA  600

seq1  GGAAGGAACAATTTAACCCTTTCCCCAAAAGCCCCAAGAAGCCTGTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAACAATTTAACCCTTTCCCCAAAAGCCCCAAGAAGCCTGTTGTT  650

seq1  ACTGGAGGTGGTAGGGTCTGAGCTTGTGGCCACAACGCTGCCCTCTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGTGGTAGGGTCTGAGCTTGTGGCCACAACGCTGCCCTCTTTCA  700

seq1  CTTTGTATGGGGGGCGGGGGGGGG  724
      ||||||||||||||||||||||||
seq2  CTTTGTATGGGGGGCGGGGGGGGG  724