BAC Information

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BAC

Clone NameB6Ng01-214F02
Chromosome2 (Build37)
Map Location 143,012,171 - 143,167,554
singlet/doubletdoublet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214F02.bB6Ng01-214F02.g
ACCGA031598GA031599
length1,0911,028
definitionB6Ng01-214F02.b B6Ng01-214F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,166,473 - 143,167,554)(143,012,171 - 143,013,188)
sequence
gaattcatagaactttcattacagggcaataataattaatgagagtaacc
gtatggtagattatgattcatatattaatatcaaatattcaccataacca
ttcccctttcagtttgtgaagagcaagtcacttgcctagtcagttagcat
tcagaaaacatgaactcaggtcagacatctttgaatattgcatggactct
gtgagcccatgtaaatctcttcttctcagatctcacgttcatttccttcc
atatctacacctcctgctgtctcaaaaatacaaagaatattagtggtctc
tctgattcctcttctttcccacctgtcacctatagatccatgactccaca
ataaaatattctccaatattcccaagctcaacttaacatagcagttttag
gttgcatttttattgtagggttgggggtggagcacaaggtgtcacacatg
cccagcaagtactccagtctgagttacacacgccgagtcctatgcttagc
tgaatcaaatgcactgcctcttttaatacagctgatttctcatcgaatca
tgactaccaagctccatggaaagtgaatattgctatattcctggaataat
tcacactttaaaacttttccccagaactaataaatgatattttgaataaa
atattttggtttaaaaaaagatgtttttttttacttaaaaaatggtgtgc
ctggctaatttatttaaaaagtaatatgatatttctttttgtaagtcttt
atcataaagttttaattacaaatctcagcatgtagtaaaatggtagtaaa
agaagccaaattaaagtggtcaatgtggaagcctgggatttcatcttttt
ctttacaaacctctctatcggtcaacttcatacataaactgacatgtgct
aaagcagtgggcctctgcttacaggctgcatgcctgcccacacataagca
gttcatctgctgtaattattatacaactatcaaattccaatgtgaatatg
atttacaacaagagttcatggtttttctggaacttaagactttgcaagaa
tatatgaagtggtctatcctttgttaagaaggtggcctttc
gaattcatattcatactcaggggaaatgggcctggggttctgacacaggg
gtgacaccaggagggccaaagttctgaggtactgcacaaagcaccttgtc
aaatgggtgtgaaaaatgtcagtggaggaaaatggaaatggtccagttca
gtcacagcatggcaagagcaagcatgcattagtctgaaaggccaaagtcc
cccaaacctatatctctatcctagggtacaggggactgattttaggatct
gagaatccatctttatagttgagagtagaaagcctcttactcacttagct
atcttctgttggtcatatctgtgggaccttaagcagggtttctgaattat
ataaaggaaaatcattcattgtggtctggtccctaagcagcagcagcagc
agcagcagcagcagcagcagcagcagcagaaggagactcccttggaaatg
cagattctctggccccactctgaattcctgccttaggaacactgagcact
gtagacaagacttctgtgcttatctacaaggaataagcaagggtgtctta
gcacactgggtggatgacagtagtctctggaagagtgtttgcaagaaact
gaacttgaggaaacctggactacctgaggatgaagatgacttctctttcc
cagggtcccacttagggcaggcagctcagctgtgaaggtaactgatctcc
tcatcccctctgcattgtgcttcctttccatgtgttcttgtaaatttttt
ttttagatttattttattaatatatgagtacactgtagctgtcttcagac
actccagaagagggagtcagatcttgttgcgggatggtttgtgagccacc
atgtggttgctgggaattgaactttgggactttggaagagcagtcgggtg
gctctttacccaactgagccatctcaccagccccccatggtgttcttata
agtggatttctttgacaggttctgtattcaaagaaagcaaatcaaaaatg
tacttggagtggcatgccagacacttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143166473_143167554
seq2: B6Ng01-214F02.b_45_1135 (reverse)

seq1  GAAA-GCCACCTTCTTTACAA--GGTAGA-CACTTCA-ATATTACTGCAA  45
      |||| ||||||||||| ||||  | |||| ||||||| |||||  |||||
seq2  GAAAGGCCACCTTCTTAACAAAGGATAGACCACTTCATATATTCTTGCAA  50

seq1  AGTC-TAAGTTCCAAGAAAAACCATGAACTCTTTGTTGTAAATCATTTTC  94
      |||| |||||||| ||||||||||||||||| |||||||||||||| |||
seq2  AGTCTTAAGTTCC-AGAAAAACCATGAACTC-TTGTTGTAAATCATATTC  98

seq1  ACATTGTGAATTTGTTGGTTGTATTATAATTACAGCAGATGAACTGCTTA  144
      |||||| ||||||| | ||||||| |||||||||||||||||||||||||
seq2  ACATTG-GAATTTGATAGTTGTATAATAATTACAGCAGATGAACTGCTTA  147

seq1  TGTGTGGGCA-GCTTGCAGCCTGTAAGCAGAGG-CCACTGCTTTAGCACA  192
      |||||||||| || ||||||||||||||||||| ||||||||||||||||
seq2  TGTGTGGGCAGGCATGCAGCCTGTAAGCAGAGGCCCACTGCTTTAGCACA  197

seq1  TGTCAGTTTATGTATG-AGTTGA-CGATAGAGAGGTTTGTAAAGAAAAAG  240
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TGTCAGTTTATGTATGAAGTTGACCGATAGAGAGGTTTGTAAAGAAAAAG  247

seq1  ATG-AATCCCAGGCTTCCACATTGACCACTTTAA-TTGGCTTCTTTTACT  288
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGAAATCCCAGGCTTCCACATTGACCACTTTAATTTGGCTTCTTTTACT  297

seq1  ACCATTTTACTACATGCTGAGATTTGTAATTAAAACTTTATGATAAAGAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTACTACATGCTGAGATTTGTAATTAAAACTTTATGATAAAGAC  347

seq1  TTACAAAAAGAAATATCATATTACTTTTTAAATAAATTAGCCAGGCACAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAAGAAATATCATATTACTTTTTAAATAAATTAGCCAGGCACAC  397

seq1  CATTTTTTAAGTAAAAAAAAACATCTTTTTTTAAACCAAAATATTTTATT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTAAGTAAAAAAAAACATCTTTTTTTAAACCAAAATATTTTATT  447

seq1  CAAAATATCATTTATTAGTTCTGGGGAAAAGTTTTAAAGTGTGAATTATT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATCATTTATTAGTTCTGGGGAAAAGTTTTAAAGTGTGAATTATT  497

seq1  CCAGGAATATAGCAATATTCACTTTCCATGGAGCTTGGTAGTCATGATTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATATAGCAATATTCACTTTCCATGGAGCTTGGTAGTCATGATTC  547

seq1  GATGAGAAATCAGCTGTATTAAAAGAGGCAGTGCATTTGATTCAGCTAAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAATCAGCTGTATTAAAAGAGGCAGTGCATTTGATTCAGCTAAG  597

seq1  CATAGGACTCGGCGTGTGTAACTCAGACTGGAGTACTTGCTGGGCATGTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACTCGGCGTGTGTAACTCAGACTGGAGTACTTGCTGGGCATGTG  647

seq1  TGACACCTTGTGCTCCACCCCCAACCCTACAATAAAAATGCAACCTAAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTTGTGCTCCACCCCCAACCCTACAATAAAAATGCAACCTAAAA  697

seq1  CTGCTATGTTAAGTTGAGCTTGGGAATATTGGAGAATATTTTATTGTGGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATGTTAAGTTGAGCTTGGGAATATTGGAGAATATTTTATTGTGGA  747

seq1  GTCATGGATCTATAGGTGACAGGTGGGAAAGAAGAGGAATCAGAGAGACC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGATCTATAGGTGACAGGTGGGAAAGAAGAGGAATCAGAGAGACC  797

seq1  ACTAATATTCTTTGTATTTTTGAGACAGCAGGAGGTGTAGATATGGAAGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATTCTTTGTATTTTTGAGACAGCAGGAGGTGTAGATATGGAAGG  847

seq1  AAATGAACGTGAGATCTGAGAAGAAGAGATTTACATGGGCTCACAGAGTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACGTGAGATCTGAGAAGAAGAGATTTACATGGGCTCACAGAGTC  897

seq1  CATGCAATATTCAAAGATGTCTGACCTGAGTTCATGTTTTCTGAATGCTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATATTCAAAGATGTCTGACCTGAGTTCATGTTTTCTGAATGCTA  947

seq1  ACTGACTAGGCAAGTGACTTGCTCTTCACAAACTGAAAGGGGAATGGTTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTAGGCAAGTGACTTGCTCTTCACAAACTGAAAGGGGAATGGTTA  997

seq1  TGGTGAATATTTGATATTAATATATGAATCATAATCTACCATACGGTTAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAATATTTGATATTAATATATGAATCATAATCTACCATACGGTTAC  1047

seq1  TCTCATTAATTATTATTGCCCTGTAATGAAAGTTCTATGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAATTATTATTGCCCTGTAATGAAAGTTCTATGAATTC  1091

seq1: chr2_143012171_143013188
seq2: B6Ng01-214F02.g_66_1093

seq1  GAATTCATATTCATACTCAGGGGAAATGGGCCTGGGGTTCTGACACAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCATACTCAGGGGAAATGGGCCTGGGGTTCTGACACAGGG  50

seq1  GTGACACCAGGAGGGCCAAAGTTCTGAGGTACTGCACAAAGCACCTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACCAGGAGGGCCAAAGTTCTGAGGTACTGCACAAAGCACCTTGTC  100

seq1  AAATGGGTGTGAAAAATGTCAGTGGAGGAAAATGGAAATGGTCCAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTGTGAAAAATGTCAGTGGAGGAAAATGGAAATGGTCCAGTTCA  150

seq1  GTCACAGCATGGCAAGAGCAAGCATGCATTAGTCTGAAAGGCCAAAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCATGGCAAGAGCAAGCATGCATTAGTCTGAAAGGCCAAAGTCC  200

seq1  CCCAAACCTATATCTCTATCCTAGGGTACAGGGGACTGATTTTAGGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCTATATCTCTATCCTAGGGTACAGGGGACTGATTTTAGGATCT  250

seq1  GAGAATCCATCTTTATAGTTGAGAGTAGAAAGCCTCTTACTCACTTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCATCTTTATAGTTGAGAGTAGAAAGCCTCTTACTCACTTAGCT  300

seq1  ATCTTCTGTTGGTCATATCTGTGGGACCTTAAGCAGGGTTTCTGAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGTTGGTCATATCTGTGGGACCTTAAGCAGGGTTTCTGAATTAT  350

seq1  ATAAAGGAAAATCATTCATTGTGGTCTGGTCCCTAAGCAGCAGCAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAAAATCATTCATTGTGGTCTGGTCCCTAAGCAGCAGCAGCAGC  400

seq1  AGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGGAGACTCCCTTGGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGGAGACTCCCTTGGAAATG  450

seq1  CAGATTCTCTGGCCCCACTCTGAATTCCTGCCTTAGGAACACTGAGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTCTGGCCCCACTCTGAATTCCTGCCTTAGGAACACTGAGCACT  500

seq1  GTAGACAAGACTTCTGTGCTTATCTACAAGGAATAAGCAAGGGTGTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAAGACTTCTGTGCTTATCTACAAGGAATAAGCAAGGGTGTCTTA  550

seq1  GCACACTGGGTGGATGACAGTAGTCTCTGGAAGAGTGTTTGCAAGAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGGGTGGATGACAGTAGTCTCTGGAAGAGTGTTTGCAAGAAACT  600

seq1  GAACTTGAGGAAACCTGGACTACCTGAGGATGAAGATGACTTCTCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAGGAAACCTGGACTACCTGAGGATGAAGATGACTTCTCTTTCC  650

seq1  CAGGGTCCCACTTAGGGCAGGCAGCTCAGCTGTGAAGGTAACTGATCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCCCACTTAGGGCAGGCAGCTCAGCTGTGAAGGTAACTGATCTCC  700

seq1  TCATCCCCTCTGCATTGTGCTTCCTTTCCATGTGTTCTTGTAAATTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCTCTGCATTGTGCTTCCTTTCCATGTGTTCTTGTAAATTTTTT  750

seq1  TTTTAGATTTATTTTATTAATATATGAGTACACTGTAGCTGTCTTCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATTTATTTTATTAATATATGAGTACACTGTAGCTGTCTTCAGAC  800

seq1  ACTCCAGAAGAGGGAGTCAGATCTTGTTGC-GGATGG-TTGTGAGCCACC  848
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  ACTCCAGAAGAGGGAGTCAGATCTTGTTGCGGGATGGTTTGTGAGCCACC  850

seq1  ATGTGGTTGCTGGGATTTGAACTTTGGACCTTTGGAAGAGCAGTCGGGT-  897
      ||||||||||||||| |||||||||||  |||||||||||||||||||| 
seq2  ATGTGGTTGCTGGGAATTGAACTTTGGGACTTTGGAAGAGCAGTCGGGTG  900

seq1  GCTC-TTACCC-ACTGAGCCATCTCACCAGCCCCCCAT-GTGTTCTTAAT  944
      |||| |||||| |||||||||||||||||||||||||| |||||||| ||
seq2  GCTCTTTACCCAACTGAGCCATCTCACCAGCCCCCCATGGTGTTCTT-AT  949

seq1  AAGT-GATTTC-TTGACAGGTTCTGTATTCAAAGAAAG-AAATC-AAAAT  990
      |||| |||||| |||||||||||||||||||||||||| ||||| |||||
seq2  AAGTGGATTTCTTTGACAGGTTCTGTATTCAAAGAAAGCAAATCAAAAAT  999

seq1  GTACT--GAGTGGCCATGCCAGACACTTGG  1018
      |||||  |||||| ||||||||||||||||
seq2  GTACTTGGAGTGG-CATGCCAGACACTTGG  1028